Wall clock time and date at job start Sun Mar 7 2021 00:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86303 * 109.46792 * 2 1 4 4 C 1.50699 * 109.47344 * 239.99716 * 2 1 3 5 5 C 1.32767 * 124.71341 * 300.00135 * 4 2 1 6 6 C 1.44424 * 113.08579 * 180.02562 * 5 4 2 7 7 C 1.47191 * 123.46513 * 180.02562 * 6 5 4 8 8 O 1.21633 * 119.99778 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00343 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00034 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.85527 * 23.79492 * 10 9 7 12 12 C 1.53783 * 113.61637 * 154.99917 * 10 9 7 13 13 C 1.53784 * 87.08037 * 89.19453 * 12 10 9 14 14 H 1.08997 * 113.61486 * 270.79745 * 13 12 10 15 15 C 1.50703 * 113.60894 * 139.98202 * 13 12 10 16 16 C 1.38185 * 119.98980 * 301.52522 * 15 13 12 17 17 C 1.38232 * 120.04918 * 180.02562 * 16 15 13 18 18 C 1.38447 * 120.02761 * 359.97438 * 17 16 15 19 19 F 1.35095 * 120.01281 * 180.02562 * 18 17 16 20 20 C 1.38445 * 119.97471 * 0.02562 * 18 17 16 21 21 C 1.38398 * 119.94690 * 0.28137 * 20 18 17 22 22 F 1.35104 * 120.00972 * 179.71479 * 21 20 18 23 23 C 1.53773 * 87.17271 * 25.39246 * 13 12 10 24 24 C 1.36011 * 113.07672 * 0.26380 * 6 5 4 25 25 S 1.70451 * 110.81589 * 359.59348 * 24 6 5 26 26 H 0.96699 * 114.00150 * 60.00783 * 1 2 3 27 27 H 1.08999 * 109.46901 * 119.99596 * 2 1 3 28 28 H 1.48494 * 110.00198 * 59.99714 * 3 2 1 29 29 H 1.48502 * 109.99636 * 181.31948 * 3 2 1 30 30 H 1.08001 * 123.45973 * 0.02562 * 5 4 2 31 31 H 0.97008 * 119.99537 * 359.97438 * 9 7 6 32 32 H 1.08995 * 113.61269 * 334.64635 * 12 10 9 33 33 H 1.09000 * 113.61321 * 203.74472 * 12 10 9 34 34 H 1.08001 * 119.97637 * 0.02562 * 16 15 13 35 35 H 1.08001 * 119.98496 * 180.02562 * 17 16 15 36 36 H 1.08002 * 120.02257 * 179.97438 * 20 18 17 37 37 H 1.09003 * 113.61674 * 89.15527 * 23 13 12 38 38 H 1.08997 * 113.61318 * 220.05569 * 23 13 12 39 39 H 1.08000 * 124.59106 * 179.71253 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.6689 -1.9763 -1.5326 6 6 2.2782 -2.4008 -2.7713 7 6 2.1355 -3.7581 -3.3227 8 8 1.4768 -4.5899 -2.7281 9 7 2.7357 -4.0795 -4.4859 10 6 2.5931 -5.4302 -5.0349 11 1 1.6973 -5.9393 -4.6795 12 6 2.7758 -5.4976 -6.5603 13 6 4.2753 -5.7092 -6.2924 14 1 4.8428 -4.7808 -6.2291 15 6 4.9140 -6.7245 -7.2048 16 6 4.4334 -8.0195 -7.2411 17 6 5.0187 -8.9519 -8.0772 18 6 6.0869 -8.5889 -8.8796 19 9 6.6584 -9.5003 -9.6969 20 6 6.5693 -7.2918 -8.8440 21 6 5.9866 -6.3608 -8.0019 22 9 6.4601 -5.0960 -7.9620 23 6 3.8723 -6.2796 -4.9225 24 6 3.0017 -1.4191 -3.3735 25 16 2.9451 0.0205 -2.4625 26 1 -0.3933 0.4416 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 1.5613 2.4679 1.2084 29 1 3.5345 1.7703 -0.0321 30 1 1.0621 -2.6224 -0.9156 31 1 3.2613 -3.4162 -4.9599 32 1 2.5512 -4.5601 -7.0688 33 1 2.2889 -6.3573 -7.0208 34 1 3.5998 -8.3035 -6.6159 35 1 4.6419 -9.9637 -8.1050 36 1 7.4029 -7.0079 -9.4693 37 1 3.6857 -7.3535 -4.9343 38 1 4.5315 -5.9725 -4.1106 39 1 3.5377 -1.5353 -4.3039 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_6894386.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:17 Heat of formation + Delta-G solvation = -65.338124 kcal Electronic energy + Delta-G solvation = -27043.774820 eV Core-core repulsion = 22681.626468 eV Total energy + Delta-G solvation = -4362.148352 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.073 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.08070 -50.05172 -41.64705 -40.45090 -39.05874 -38.49212 -37.08125 -34.69980 -32.11730 -31.79023 -31.14203 -26.99458 -26.74372 -26.67582 -25.36494 -24.21082 -22.91548 -22.19459 -20.59635 -20.34584 -19.34231 -18.86748 -18.30773 -18.15222 -17.60923 -17.21782 -17.05641 -16.85468 -16.57711 -16.38205 -16.32156 -15.98801 -15.79629 -15.52701 -15.31201 -15.22654 -14.82183 -14.47220 -14.12224 -14.06915 -13.80403 -13.67626 -13.60155 -13.53348 -13.42518 -12.84246 -12.65669 -12.57108 -12.30145 -12.07180 -11.91663 -11.74716 -11.33093 -11.06681 -10.60872 -10.22393 -10.10048 -9.97902 -9.60732 -9.44603 -5.12605 -0.34449 -0.13512 -0.04125 0.38486 0.69630 0.81848 1.22993 1.60125 1.90704 2.04512 2.23354 2.27776 2.81452 3.28574 3.39261 3.43992 3.47962 3.62725 3.66405 3.66734 3.85245 3.89416 3.92964 3.97894 4.06633 4.16753 4.27270 4.41365 4.59295 4.68944 4.70858 4.73678 4.81633 4.83922 4.89343 4.90465 4.99471 5.00473 5.06608 5.10395 5.16924 5.25840 5.55993 5.71813 6.43540 6.68914 7.12744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.038 4.038 3 Si 0.739 3.261 4 C -0.249 4.249 5 C -0.075 4.075 6 C -0.183 4.183 7 C 0.579 3.421 8 O -0.581 6.581 9 N -0.695 5.695 10 C 0.114 3.886 11 H 0.093 0.907 12 C -0.121 4.121 13 C -0.071 4.071 14 H 0.104 0.896 15 C -0.111 4.111 16 C -0.056 4.056 17 C -0.155 4.155 18 C 0.107 3.893 19 F -0.142 7.142 20 C -0.198 4.198 21 C 0.117 3.883 22 F -0.137 7.137 23 C -0.139 4.139 24 C -0.190 4.190 25 S 0.249 5.751 26 H 0.397 0.603 27 H 0.114 0.886 28 H -0.274 1.274 29 H -0.254 1.254 30 H 0.132 0.868 31 H 0.413 0.587 32 H 0.088 0.912 33 H 0.113 0.887 34 H 0.171 0.829 35 H 0.162 0.838 36 H 0.151 0.849 37 H 0.109 0.891 38 H 0.066 0.934 39 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.486 4.183 -4.171 5.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.361 6.361 2 C -0.149 4.149 3 Si 0.640 3.360 4 C -0.365 4.365 5 C -0.105 4.105 6 C -0.200 4.200 7 C 0.366 3.634 8 O -0.462 6.462 9 N -0.347 5.347 10 C 0.009 3.991 11 H 0.111 0.889 12 C -0.159 4.159 13 C -0.089 4.089 14 H 0.122 0.878 15 C -0.113 4.113 16 C -0.073 4.073 17 C -0.174 4.174 18 C 0.088 3.912 19 F -0.121 7.121 20 C -0.218 4.218 21 C 0.097 3.903 22 F -0.115 7.115 23 C -0.178 4.178 24 C -0.329 4.329 25 S 0.516 5.484 26 H 0.247 0.753 27 H 0.131 0.869 28 H -0.199 1.199 29 H -0.180 1.180 30 H 0.150 0.850 31 H 0.251 0.749 32 H 0.106 0.894 33 H 0.132 0.868 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.169 0.831 37 H 0.128 0.872 38 H 0.085 0.915 39 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 1.257 5.338 -3.024 6.262 hybrid contribution 0.128 -1.998 -0.009 2.002 sum 1.385 3.340 -3.033 4.719 Atomic orbital electron populations 1.86501 1.16966 1.82217 1.50370 1.24687 0.85202 1.10257 0.94787 0.94165 0.79462 0.74450 0.87878 1.24899 1.08751 0.98847 1.04048 1.20973 0.99133 0.94984 0.95374 1.20092 1.06524 0.94808 0.98621 1.17873 0.78167 0.86705 0.80650 1.90794 1.42593 1.51903 1.60885 1.45406 1.52545 1.13944 1.22765 1.21929 0.99222 0.82906 0.95090 0.88904 1.23420 0.93661 1.04796 0.94011 1.21539 0.96224 0.97249 0.93877 0.87762 1.19967 0.95802 0.96739 0.98745 1.21064 0.99316 0.90271 0.96697 1.21516 0.95861 1.02901 0.97101 1.17568 0.94938 0.86215 0.92500 1.91524 1.83973 1.65881 1.70724 1.21170 1.04506 0.92627 1.03483 1.17297 0.95278 0.79380 0.98295 1.91501 1.87631 1.37038 1.95343 1.23625 0.96819 1.01281 0.96042 1.26171 1.02571 0.98308 1.05822 1.82950 1.44753 1.09942 1.10773 0.75287 0.86898 1.19915 1.17967 0.85001 0.74891 0.89361 0.86834 0.81185 0.82080 0.83130 0.87241 0.91500 0.77984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.37 12.85 -148.98 -1.91 -2.29 16 2 C -0.04 0.03 2.95 71.24 0.21 0.24 16 3 Si 0.74 -2.84 30.91 68.60 2.12 -0.72 16 4 C -0.25 0.10 5.68 24.51 0.14 0.24 16 5 C -0.08 -0.33 9.91 22.67 0.22 -0.10 16 6 C -0.18 -0.36 5.98 -19.87 -0.12 -0.48 16 7 C 0.58 3.08 7.79 86.60 0.67 3.76 16 8 O -0.58 -8.48 16.40 -4.14 -0.07 -8.55 16 9 N -0.70 1.63 5.23 -443.26 -2.32 -0.69 16 10 C 0.11 -0.35 4.33 45.58 0.20 -0.15 16 11 H 0.09 0.09 7.46 -2.39 -0.02 0.08 16 12 C -0.12 0.90 7.29 31.12 0.23 1.13 16 13 C -0.07 0.41 3.79 -11.01 -0.04 0.36 16 14 H 0.10 -0.60 7.42 -2.39 -0.02 -0.62 16 15 C -0.11 0.37 5.30 -19.81 -0.10 0.26 16 16 C -0.06 0.31 8.53 22.26 0.19 0.50 16 17 C -0.16 0.52 10.02 22.32 0.22 0.74 16 18 C 0.11 0.11 7.30 22.37 0.16 0.28 16 19 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 20 C -0.20 -0.19 10.01 22.36 0.22 0.03 16 21 C 0.12 0.04 7.24 22.37 0.16 0.20 16 22 F -0.14 -0.27 16.35 44.97 0.74 0.46 16 23 C -0.14 0.63 7.27 31.18 0.23 0.86 16 24 C -0.19 0.99 10.38 67.30 0.70 1.69 16 25 S 0.25 -1.43 20.18 -56.49 -1.14 -2.57 16 26 H 0.40 -3.08 8.70 -74.06 -0.64 -3.73 16 27 H 0.11 0.08 7.96 -2.39 -0.02 0.06 16 28 H -0.27 -0.82 7.11 99.48 0.71 -0.12 16 29 H -0.25 0.22 7.11 99.48 0.71 0.92 16 30 H 0.13 1.12 8.06 -2.91 -0.02 1.09 16 31 H 0.41 -3.49 7.20 -92.70 -0.67 -4.16 16 32 H 0.09 -0.75 8.14 -2.39 -0.02 -0.77 16 33 H 0.11 -1.06 7.64 -2.39 -0.02 -1.08 16 34 H 0.17 -1.85 6.72 -2.91 -0.02 -1.87 16 35 H 0.16 -1.14 8.06 -2.91 -0.02 -1.16 16 36 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 37 H 0.11 -0.75 6.39 -2.39 -0.02 -0.77 16 38 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 39 H 0.20 -2.52 7.01 -2.91 -0.02 -2.54 16 Total: 0.00 -20.88 354.13 1.35 -19.53 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: -0.14 Total: -14.90 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 3.30 Total: 9.56 kcal Atomic # 7 Polarization: 1.63 SS G_CDS: -2.32 Total: -0.69 kcal Atomic # 8 Polarization: -8.86 SS G_CDS: -1.98 Total: -10.84 kcal Atomic # 9 Polarization: -0.87 SS G_CDS: 1.51 Total: 0.64 kcal Atomic # 14 Polarization: -2.84 SS G_CDS: 2.12 Total: -0.72 kcal Atomic # 16 Polarization: -1.43 SS G_CDS: -1.14 Total: -2.57 kcal Total: -20.88 1.35 -19.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_6894386.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.810 kcal (2) G-P(sol) polarization free energy of solvation -20.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds