Wall clock time and date at job start Sun Mar 7 2021 00:10:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37932 * 120.07776 * 2 1 4 4 C 1.38379 * 120.15111 * 180.02562 * 3 2 1 5 5 C 1.50697 * 119.85608 * 180.02562 * 4 3 2 6 6 C 1.38334 * 120.28778 * 359.97438 * 4 3 2 7 7 C 1.50706 * 119.92517 * 179.97438 * 6 4 3 8 8 O 1.42903 * 109.46915 * 75.00425 * 7 6 4 9 9 Si 1.86303 * 109.47221 * 194.99842 * 7 6 4 10 10 C 1.37977 * 120.15222 * 0.02562 * 6 4 3 11 11 C 1.39563 * 119.84631 * 359.67967 * 10 6 4 12 12 C 1.47845 * 120.14649 * 180.29615 * 11 10 6 13 13 O 1.21549 * 120.00300 * 186.30814 * 12 11 10 14 14 N 1.34773 * 119.99676 * 6.30231 * 12 11 10 15 15 C 1.46508 * 120.00144 * 179.97438 * 14 12 11 16 16 H 1.09006 * 112.84415 * 334.67355 * 15 14 12 17 17 C 1.53777 * 113.61185 * 105.86490 * 15 14 12 18 18 C 1.54052 * 86.98646 * 89.16667 * 17 15 14 19 19 H 1.09001 * 113.61099 * 270.88198 * 18 17 15 20 20 C 1.50701 * 113.69790 * 139.98818 * 18 17 15 21 21 C 1.38448 * 119.98429 * 142.46790 * 20 18 17 22 22 F 1.35099 * 120.01765 * 359.95359 * 21 20 18 23 23 C 1.38445 * 119.97279 * 179.97438 * 21 20 18 24 24 C 1.38402 * 119.94674 * 359.97438 * 23 21 20 25 25 F 1.35100 * 120.01131 * 179.97438 * 24 23 21 26 26 C 1.38496 * 119.97559 * 0.02562 * 24 23 21 27 27 C 1.38181 * 120.02544 * 359.74435 * 26 24 23 28 28 C 1.53780 * 113.61498 * 203.47471 * 15 14 12 29 29 H 1.08998 * 109.46669 * 96.55103 * 1 2 3 30 30 H 1.09000 * 109.47002 * 336.55316 * 1 2 3 31 31 H 1.08996 * 109.47380 * 216.55149 * 1 2 3 32 32 H 1.08003 * 119.92564 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47385 * 90.00221 * 5 4 3 34 34 H 1.09003 * 109.47056 * 209.99856 * 5 4 3 35 35 H 1.08998 * 109.47369 * 329.99480 * 5 4 3 36 36 H 1.08997 * 109.47091 * 315.00171 * 7 6 4 37 37 H 0.96699 * 114.00700 * 59.99617 * 8 7 6 38 38 H 1.48492 * 110.00057 * 179.97438 * 9 7 6 39 39 H 1.48497 * 109.99952 * 301.32390 * 9 7 6 40 40 H 1.07998 * 120.08174 * 179.97438 * 10 6 4 41 41 H 0.97001 * 120.00459 * 0.02562 * 14 12 11 42 42 H 1.09007 * 113.61362 * 203.66532 * 17 15 14 43 43 H 1.09000 * 113.61879 * 334.56972 * 17 15 14 44 44 H 1.07998 * 120.03057 * 180.02562 * 23 21 20 45 45 H 1.07998 * 119.98697 * 179.97438 * 26 24 23 46 46 H 1.07997 * 119.97802 * 180.25543 * 27 26 24 47 47 H 1.08996 * 113.61461 * 25.43281 * 28 15 14 48 48 H 1.09003 * 113.60981 * 156.33175 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1936 0.0000 4 6 3.5821 1.1954 -0.0005 5 6 4.3306 2.5033 0.0001 6 6 4.2813 0.0017 -0.0005 7 6 5.7883 0.0132 -0.0017 8 8 6.2629 0.3660 1.2992 9 14 6.4219 -1.6789 -0.4560 10 6 3.6021 -1.1993 -0.0005 11 6 2.2066 -1.2081 0.0062 12 6 1.4721 -2.4912 0.0129 13 8 0.2616 -2.4992 -0.0969 14 7 2.1449 -3.6520 0.1406 15 6 1.4172 -4.9235 0.1477 16 1 0.3844 -4.8182 0.4803 17 6 1.5658 -5.7256 -1.1558 18 6 2.8104 -6.3734 -0.5198 19 1 3.7328 -5.8238 -0.7076 20 6 2.9390 -7.8474 -0.8056 21 6 4.1874 -8.4023 -1.0308 22 9 5.2900 -7.6224 -0.9952 23 6 4.3053 -9.7566 -1.2928 24 6 3.1749 -10.5543 -1.3288 25 9 3.2884 -11.8759 -1.5850 26 6 1.9272 -9.9970 -1.1033 27 6 1.8112 -8.6460 -0.8372 28 6 2.1763 -6.0638 0.8465 29 1 -0.3632 -0.1172 -1.0210 30 1 -0.3633 0.9428 0.4089 31 1 -0.3634 -0.8255 0.6120 32 1 1.6583 2.1290 0.0004 33 1 4.5115 2.8179 1.0278 34 1 5.2833 2.3769 -0.5142 35 1 3.7385 3.2610 -0.5131 36 1 6.1455 0.7423 -0.7289 37 1 5.9827 -0.2407 1.9981 38 1 7.9068 -1.6806 -0.4613 39 1 5.9156 -2.6869 0.5098 40 1 4.1492 -2.1305 -0.0010 41 1 3.1109 -3.6456 0.2285 42 1 0.7504 -6.4273 -1.3322 43 1 1.7895 -5.1079 -2.0256 44 1 5.2786 -10.1904 -1.4682 45 1 1.0449 -10.6193 -1.1318 46 1 0.8383 -8.2131 -0.6573 47 1 2.8924 -5.7189 1.5923 48 1 1.5274 -6.8577 1.2167 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_9599494.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:28 Heat of formation + Delta-G solvation = -69.760532 kcal Electronic energy + Delta-G solvation = -33563.515383 eV Core-core repulsion = 28800.947777 eV Total energy + Delta-G solvation = -4762.567606 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.148 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -50.07675 -50.04420 -41.89689 -41.01375 -39.90667 -38.71989 -37.69080 -34.99621 -34.41088 -33.18960 -31.87909 -31.42675 -29.30712 -28.54328 -26.72413 -26.22178 -25.56801 -24.32678 -23.73397 -23.15613 -22.36963 -21.07592 -20.20091 -19.39229 -19.10434 -18.22986 -17.68371 -17.44961 -17.11053 -17.04972 -16.81367 -16.49540 -16.39655 -16.36553 -16.27964 -16.05332 -15.74180 -15.52329 -15.25159 -15.21807 -14.82320 -14.62133 -14.46261 -14.06975 -14.04236 -13.85602 -13.73514 -13.58144 -13.41931 -13.37846 -13.09506 -12.89678 -12.79374 -12.70287 -12.55674 -12.52419 -12.03392 -11.94098 -11.77674 -11.72635 -11.30888 -10.72060 -10.58946 -10.18840 -10.08900 -9.89834 -9.62395 -9.58501 -4.96516 -0.24997 -0.12578 -0.03203 0.16972 1.26040 1.49586 1.72403 1.91851 2.02378 2.28240 2.64163 2.82309 3.29458 3.39293 3.44108 3.46918 3.49941 3.58746 3.67226 3.67597 3.69779 3.82233 3.87221 3.93851 4.07669 4.14811 4.17518 4.20840 4.49011 4.52471 4.59463 4.61368 4.68573 4.70968 4.74559 4.78791 4.81563 4.84184 4.84414 4.90018 4.91342 4.92104 5.01384 5.05433 5.08587 5.11370 5.14310 5.24998 5.31294 5.49256 5.51229 5.59967 5.72751 5.81435 6.41422 6.47881 7.12545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.024 4.024 3 C -0.136 4.136 4 C -0.029 4.029 5 C -0.120 4.120 6 C -0.134 4.134 7 C -0.075 4.075 8 O -0.541 6.541 9 Si 0.744 3.256 10 C -0.074 4.074 11 C -0.159 4.159 12 C 0.561 3.439 13 O -0.557 6.557 14 N -0.703 5.703 15 C 0.116 3.884 16 H 0.099 0.901 17 C -0.136 4.136 18 C -0.075 4.075 19 H 0.101 0.899 20 C -0.111 4.111 21 C 0.115 3.885 22 F -0.138 7.138 23 C -0.199 4.199 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.154 4.154 27 C -0.055 4.055 28 C -0.126 4.126 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.128 0.872 37 H 0.385 0.615 38 H -0.301 1.301 39 H -0.265 1.265 40 H 0.143 0.857 41 H 0.407 0.593 42 H 0.112 0.888 43 H 0.071 0.929 44 H 0.150 0.850 45 H 0.162 0.838 46 H 0.173 0.827 47 H 0.080 0.920 48 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.728 0.631 -0.485 1.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.025 4.025 3 C -0.153 4.153 4 C -0.029 4.029 5 C -0.176 4.176 6 C -0.134 4.134 7 C -0.185 4.185 8 O -0.349 6.349 9 Si 0.648 3.352 10 C -0.092 4.092 11 C -0.162 4.162 12 C 0.351 3.649 13 O -0.437 6.437 14 N -0.355 5.355 15 C 0.011 3.989 16 H 0.117 0.883 17 C -0.174 4.174 18 C -0.093 4.093 19 H 0.120 0.880 20 C -0.112 4.112 21 C 0.096 3.904 22 F -0.116 7.116 23 C -0.218 4.218 24 C 0.088 3.912 25 F -0.121 7.121 26 C -0.173 4.173 27 C -0.072 4.072 28 C -0.163 4.163 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.163 0.837 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.145 0.855 37 H 0.235 0.765 38 H -0.228 1.228 39 H -0.190 1.190 40 H 0.160 0.840 41 H 0.244 0.756 42 H 0.130 0.870 43 H 0.090 0.910 44 H 0.168 0.832 45 H 0.180 0.820 46 H 0.190 0.810 47 H 0.099 0.901 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.802 0.382 -0.645 1.098 hybrid contribution 0.941 -0.139 1.061 1.425 sum 0.138 0.243 0.416 0.502 Atomic orbital electron populations 1.21038 0.90013 1.03239 1.03224 1.20227 0.97031 0.91905 0.93317 1.21195 0.93655 0.98040 1.02460 1.20212 0.93472 0.95862 0.93393 1.20942 1.00433 0.93023 1.03238 1.20063 0.96314 0.92681 1.04375 1.25101 0.91251 1.13776 0.88336 1.86594 1.76358 1.54986 1.16977 0.94299 0.77813 0.73794 0.89265 1.21296 0.92706 0.98331 0.96911 1.19659 0.93657 0.92893 1.09972 1.18380 0.86783 0.84181 0.75593 1.90733 1.14839 1.87429 1.50666 1.45592 1.11015 1.04977 1.73906 1.21899 0.97252 0.82121 0.97662 0.88341 1.23630 0.97503 0.98932 0.97340 1.21615 0.99757 0.89975 0.97977 0.88035 1.19959 0.91308 0.97279 1.02634 1.17320 0.83067 0.87932 1.02098 1.91500 1.51998 1.74212 1.93914 1.21164 1.00422 0.93049 1.07173 1.17576 0.94581 0.77690 1.01399 1.91525 1.96964 1.32075 1.91554 1.21520 0.96561 0.96912 1.02311 1.21071 0.99326 0.91550 0.95269 1.23440 0.99686 0.97633 0.95580 0.90965 0.90910 0.90267 0.83666 0.90483 0.90420 0.90208 0.85461 0.76540 1.22842 1.19037 0.83986 0.75555 0.86968 0.90986 0.83223 0.82008 0.80998 0.90114 0.86654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 8.75 71.24 0.62 0.20 16 2 C -0.02 -0.07 5.91 -19.61 -0.12 -0.19 16 3 C -0.14 -0.05 9.31 22.23 0.21 0.15 16 4 C -0.03 0.02 5.89 -19.81 -0.12 -0.10 16 5 C -0.12 0.36 9.53 71.23 0.68 1.04 16 6 C -0.13 0.21 5.26 -19.90 -0.10 0.11 16 7 C -0.08 0.22 2.04 71.24 0.15 0.37 16 8 O -0.54 0.20 12.80 -148.98 -1.91 -1.71 16 9 Si 0.74 -2.96 30.24 68.60 2.07 -0.89 16 10 C -0.07 0.13 8.13 22.53 0.18 0.31 16 11 C -0.16 -0.37 5.87 -20.09 -0.12 -0.49 16 12 C 0.56 2.13 7.70 86.79 0.67 2.79 16 13 O -0.56 -5.46 12.95 -3.87 -0.05 -5.51 16 14 N -0.70 1.42 5.21 -442.90 -2.31 -0.89 16 15 C 0.12 -0.43 4.30 45.51 0.20 -0.24 16 16 H 0.10 -0.09 7.50 -2.38 -0.02 -0.11 16 17 C -0.14 0.75 7.27 31.21 0.23 0.98 16 18 C -0.07 0.41 3.79 -10.92 -0.04 0.37 16 19 H 0.10 -0.50 7.44 -2.39 -0.02 -0.51 16 20 C -0.11 0.35 5.30 -19.82 -0.10 0.25 16 21 C 0.12 0.08 7.24 22.37 0.16 0.24 16 22 F -0.14 -0.37 16.36 44.97 0.74 0.37 16 23 C -0.20 -0.23 10.01 22.36 0.22 -0.01 16 24 C 0.11 0.11 7.30 22.37 0.16 0.27 16 25 F -0.14 -0.60 17.27 44.97 0.78 0.18 16 26 C -0.15 0.55 10.02 22.32 0.22 0.78 16 27 C -0.05 0.33 8.60 22.25 0.19 0.52 16 28 C -0.13 0.87 7.29 31.12 0.23 1.09 16 29 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 31 H 0.08 0.59 5.82 -2.39 -0.01 0.57 16 32 H 0.15 -0.42 8.06 -2.91 -0.02 -0.44 16 33 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.08 -0.28 6.22 -2.39 -0.01 -0.30 16 35 H 0.08 -0.40 8.08 -2.39 -0.02 -0.42 16 36 H 0.13 -0.57 6.48 -2.39 -0.02 -0.59 16 37 H 0.39 -2.17 8.70 -74.06 -0.64 -2.81 16 38 H -0.30 -1.29 7.11 99.48 0.71 -0.58 16 39 H -0.26 0.80 6.68 99.48 0.66 1.46 16 40 H 0.14 -0.83 3.25 -2.91 -0.01 -0.84 16 41 H 0.41 -2.38 6.78 -92.71 -0.63 -3.01 16 42 H 0.11 -0.94 6.34 -2.38 -0.02 -0.95 16 43 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 44 H 0.15 -0.03 8.06 -2.91 -0.02 -0.05 16 45 H 0.16 -1.21 8.06 -2.91 -0.02 -1.23 16 46 H 0.17 -1.99 6.68 -2.91 -0.02 -2.01 16 47 H 0.08 -0.55 8.14 -2.39 -0.02 -0.56 16 48 H 0.12 -1.06 7.71 -2.39 -0.02 -1.08 16 Total: 0.00 -16.22 393.92 2.61 -13.62 By element: Atomic # 1 Polarization: -13.39 SS G_CDS: -0.23 Total: -13.62 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 3.52 Total: 8.45 kcal Atomic # 7 Polarization: 1.42 SS G_CDS: -2.31 Total: -0.89 kcal Atomic # 8 Polarization: -5.26 SS G_CDS: -1.96 Total: -7.22 kcal Atomic # 9 Polarization: -0.97 SS G_CDS: 1.51 Total: 0.54 kcal Atomic # 14 Polarization: -2.96 SS G_CDS: 2.07 Total: -0.89 kcal Total: -16.22 2.61 -13.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_9599494.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.145 kcal (2) G-P(sol) polarization free energy of solvation -16.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds