Wall clock time and date at job start Sun Mar 7 2021 00:10:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47240 * 120.00110 * 2 1 3 5 5 C 1.34244 * 126.49772 * 255.31625 * 4 2 1 6 6 N 1.36835 * 109.93369 * 180.16632 * 5 4 2 7 7 C 1.46501 * 125.05794 * 179.81566 * 6 5 4 8 8 C 1.50704 * 109.47007 * 264.69756 * 7 6 5 9 9 O 1.21275 * 119.99872 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99663 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99666 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.84854 * 23.80132 * 11 10 8 13 13 C 1.53782 * 113.61238 * 154.99812 * 11 10 8 14 14 C 1.53776 * 87.08270 * 89.11635 * 13 11 10 15 15 H 1.09000 * 113.61768 * 270.79938 * 14 13 11 16 16 C 1.50703 * 113.61616 * 139.97816 * 14 13 11 17 17 C 1.38455 * 119.98567 * 119.99888 * 16 14 13 18 18 F 1.35101 * 120.01385 * 359.70554 * 17 16 14 19 19 C 1.38440 * 119.97269 * 179.97438 * 17 16 14 20 20 C 1.38399 * 119.95071 * 0.02562 * 19 17 16 21 21 F 1.35098 * 120.01049 * 179.97438 * 20 19 17 22 22 C 1.38492 * 119.97296 * 359.97438 * 20 19 17 23 23 C 1.38185 * 120.02825 * 359.97438 * 22 20 19 24 24 C 1.53776 * 87.08249 * 25.43025 * 14 13 11 25 25 C 1.37688 * 109.87530 * 359.54897 * 6 5 4 26 26 C 1.39091 * 133.51334 * 180.23750 * 25 6 5 27 27 C 1.37787 * 119.77928 * 180.02562 * 26 25 6 28 28 C 1.38791 * 120.66690 * 0.02562 * 27 26 25 29 29 C 1.36662 * 120.52726 * 359.97438 * 28 27 26 30 30 C 1.39596 * 119.76591 * 0.02562 * 29 28 27 31 31 H 0.96700 * 113.99857 * 299.99846 * 1 2 3 32 32 H 1.08996 * 109.47008 * 239.99897 * 2 1 3 33 33 H 1.48499 * 109.99906 * 178.68049 * 3 2 1 34 34 H 1.48498 * 109.99828 * 300.00069 * 3 2 1 35 35 H 1.08000 * 125.03099 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.46958 * 144.69804 * 7 6 5 37 37 H 1.09005 * 109.47571 * 24.69769 * 7 6 5 38 38 H 0.96999 * 120.00851 * 359.97438 * 10 8 7 39 39 H 1.08995 * 113.61749 * 334.56394 * 13 11 10 40 40 H 1.09000 * 113.61056 * 203.66167 * 13 11 10 41 41 H 1.08000 * 120.02408 * 179.97438 * 19 17 16 42 42 H 1.08003 * 119.98709 * 180.02562 * 22 20 19 43 43 H 1.08001 * 119.97561 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.61918 * 89.11855 * 24 14 13 45 45 H 1.09006 * 113.62044 * 220.01972 * 24 14 13 46 46 H 1.08006 * 120.10764 * 0.05577 * 26 25 6 47 47 H 1.07997 * 119.66522 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.73605 * 179.97438 * 28 27 26 49 49 H 1.07994 * 120.11861 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4555 -0.1372 2.3254 6 7 2.8028 -1.0990 3.2346 7 6 3.4076 -0.8403 4.5436 8 6 4.9059 -0.9626 4.4378 9 8 5.4181 -1.2391 3.3738 10 7 5.6766 -0.7657 5.5258 11 6 7.1331 -0.8851 5.4230 12 1 7.5005 -0.7235 4.4097 13 6 7.8939 -0.0803 6.4899 14 6 7.8014 -1.3279 7.3842 15 1 6.9011 -1.3594 7.9979 16 6 9.0567 -1.6002 8.1723 17 6 9.0135 -1.6240 9.5560 18 9 7.8476 -1.3973 10.1997 19 6 10.1668 -1.8748 10.2797 20 6 11.3617 -2.1009 9.6190 21 9 12.4879 -2.3451 10.3241 22 6 11.4024 -2.0765 8.2349 23 6 10.2505 -1.8272 7.5135 24 6 7.6959 -2.1514 6.0898 25 6 2.4939 -2.3456 2.7384 26 6 2.6294 -3.6362 3.2391 27 6 2.2159 -4.7108 2.4822 28 6 1.6651 -4.5194 1.2227 29 6 1.5227 -3.2601 0.7114 30 6 1.9349 -2.1570 1.4610 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8899 33 1 3.5346 1.7702 0.0321 34 1 1.5615 2.4678 -1.2085 35 1 2.5858 0.9256 2.4667 36 1 3.0339 -1.5658 5.2662 37 1 3.1475 0.1662 4.8716 38 1 5.2670 -0.5449 6.3769 39 1 7.3358 0.7739 6.8730 40 1 8.9134 0.1744 6.2000 41 1 10.1341 -1.8932 11.3590 42 1 12.3347 -2.2533 7.7191 43 1 10.2833 -1.8080 6.4342 44 1 8.6611 -2.4629 5.6905 45 1 6.9777 -2.9693 6.1498 46 1 3.0567 -3.7954 4.2181 47 1 2.3216 -5.7120 2.8729 48 1 1.3464 -5.3725 0.6422 49 1 1.0928 -3.1188 -0.2692 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13428180_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:35 Heat of formation + Delta-G solvation = -28.566404 kcal Electronic energy + Delta-G solvation = -35973.530753 eV Core-core repulsion = 30890.871266 eV Total energy + Delta-G solvation = -5082.659487 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.143 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -50.12396 -50.05368 -42.51787 -41.65800 -40.29098 -38.87643 -37.99024 -37.50333 -34.81614 -33.99009 -32.07418 -31.76627 -31.20250 -30.12924 -28.97476 -27.00873 -26.48945 -25.60908 -24.42055 -23.69200 -23.12256 -22.64089 -21.89087 -20.62698 -20.45581 -19.43914 -18.77343 -18.47109 -18.28411 -17.68713 -17.47113 -17.19147 -17.09642 -16.92242 -16.65788 -16.39799 -16.33097 -16.30948 -15.97642 -15.63572 -15.54648 -15.44975 -15.25686 -15.12462 -14.72871 -14.60811 -14.38777 -14.23119 -13.99270 -13.92176 -13.78727 -13.65572 -13.59765 -13.35791 -12.94269 -12.71541 -12.59966 -12.47451 -12.28215 -12.12574 -12.01816 -11.94821 -11.68581 -11.54989 -11.15825 -10.43731 -10.33354 -10.23106 -10.21958 -9.71631 -9.03614 -8.54109 -5.03296 -0.24528 -0.16760 0.26581 0.77901 1.31947 1.35978 1.41238 1.65179 1.77143 2.03973 2.06208 2.13867 2.71838 3.09381 3.10207 3.28103 3.30823 3.33833 3.42968 3.47206 3.48898 3.63753 3.64866 3.73499 3.74306 3.79039 3.84548 3.85246 3.99531 4.05827 4.30338 4.35562 4.36474 4.44199 4.53582 4.57139 4.58317 4.64331 4.69839 4.70391 4.75055 4.77624 4.78528 4.85136 4.89207 4.90312 4.97580 5.06855 5.24294 5.33300 5.59190 5.63484 5.79558 5.85002 5.88839 6.10523 6.28557 6.35019 6.75083 6.94414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.029 4.029 3 Si 0.682 3.318 4 C -0.197 4.197 5 C 0.069 3.931 6 N -0.466 5.466 7 C 0.092 3.908 8 C 0.494 3.506 9 O -0.511 6.511 10 N -0.712 5.712 11 C 0.121 3.879 12 H 0.108 0.892 13 C -0.134 4.134 14 C -0.074 4.074 15 H 0.104 0.896 16 C -0.116 4.116 17 C 0.134 3.866 18 F -0.129 7.129 19 C -0.190 4.190 20 C 0.128 3.872 21 F -0.130 7.130 22 C -0.159 4.159 23 C -0.060 4.060 24 C -0.142 4.142 25 C 0.109 3.891 26 C -0.128 4.128 27 C -0.097 4.097 28 C -0.145 4.145 29 C -0.066 4.066 30 C -0.087 4.087 31 H 0.376 0.624 32 H 0.111 0.889 33 H -0.256 1.256 34 H -0.255 1.255 35 H 0.171 0.829 36 H 0.119 0.881 37 H 0.125 0.875 38 H 0.403 0.597 39 H 0.080 0.920 40 H 0.101 0.899 41 H 0.150 0.850 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.098 0.902 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.125 0.875 48 H 0.123 0.877 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.333 2.932 5.233 6.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.140 4.140 3 Si 0.584 3.416 4 C -0.205 4.205 5 C -0.056 4.056 6 N -0.150 5.150 7 C -0.034 4.034 8 C 0.278 3.722 9 O -0.384 6.384 10 N -0.365 5.365 11 C 0.015 3.985 12 H 0.126 0.874 13 C -0.172 4.172 14 C -0.093 4.093 15 H 0.122 0.878 16 C -0.117 4.117 17 C 0.114 3.886 18 F -0.107 7.107 19 C -0.209 4.209 20 C 0.109 3.891 21 F -0.108 7.108 22 C -0.178 4.178 23 C -0.078 4.078 24 C -0.181 4.181 25 C 0.004 3.996 26 C -0.148 4.148 27 C -0.116 4.116 28 C -0.165 4.165 29 C -0.084 4.084 30 C -0.091 4.091 31 H 0.223 0.777 32 H 0.128 0.872 33 H -0.181 1.181 34 H -0.179 1.179 35 H 0.188 0.812 36 H 0.136 0.864 37 H 0.143 0.857 38 H 0.238 0.762 39 H 0.099 0.901 40 H 0.119 0.881 41 H 0.167 0.833 42 H 0.163 0.837 43 H 0.163 0.837 44 H 0.116 0.884 45 H 0.096 0.904 46 H 0.132 0.868 47 H 0.143 0.857 48 H 0.141 0.859 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.742 3.112 3.792 4.961 hybrid contribution 0.185 -0.592 0.899 1.093 sum 0.927 2.519 4.692 5.405 Atomic orbital electron populations 1.86504 1.17520 1.81764 1.48910 1.24330 0.84619 1.08751 0.96306 0.95418 0.80974 0.77535 0.87715 1.20638 1.10111 0.92381 0.97357 1.21508 1.00968 0.93824 0.89303 1.43188 1.52511 1.04659 1.14609 1.21586 0.90536 1.06008 0.85312 1.21050 0.89564 0.77279 0.84334 1.90821 1.74549 1.45255 1.27778 1.45631 1.06423 1.72331 1.12128 1.21840 0.79597 0.96354 1.00676 0.87430 1.23443 1.01877 0.96668 0.95182 1.21553 0.95238 0.97590 0.94876 0.87796 1.19783 0.96722 1.03725 0.91482 1.17131 0.81384 1.00465 0.89615 1.91527 1.45698 1.91777 1.81710 1.21089 0.91103 1.06634 1.02106 1.17343 0.82158 1.00002 0.89618 1.91563 1.49068 1.91411 1.78748 1.21264 1.00668 1.03819 0.92017 1.20772 0.90189 0.96124 1.00716 1.23579 1.02527 0.97431 0.94525 1.18160 1.01208 0.85849 0.94342 1.19952 1.05005 0.89256 1.00617 1.20825 0.98342 0.97941 0.94477 1.20672 1.02431 0.96935 0.96414 1.20309 0.97985 0.90956 0.99175 1.18944 1.03378 0.92819 0.93927 0.77719 0.87174 1.18057 1.17916 0.81189 0.86356 0.85736 0.76208 0.90114 0.88066 0.83267 0.83725 0.83724 0.88412 0.90406 0.86762 0.85737 0.85935 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.80 12.88 -35.23 -0.45 -1.26 16 2 C -0.03 -0.04 3.06 36.01 0.11 0.07 16 3 Si 0.68 -0.24 30.76 -169.99 -5.23 -5.47 16 4 C -0.20 -0.44 5.57 -102.71 -0.57 -1.01 16 5 C 0.07 0.02 9.89 -16.73 -0.17 -0.14 16 6 N -0.47 -0.34 2.27 -115.70 -0.26 -0.60 16 7 C 0.09 -0.29 6.48 -5.19 -0.03 -0.32 16 8 C 0.49 -0.34 7.90 -10.99 -0.09 -0.43 16 9 O -0.51 -2.35 16.02 5.56 0.09 -2.26 16 10 N -0.71 2.47 5.26 -53.02 -0.28 2.20 16 11 C 0.12 -0.32 4.32 -67.11 -0.29 -0.61 16 12 H 0.11 -0.07 7.46 -51.93 -0.39 -0.46 16 13 C -0.13 0.53 7.29 -25.92 -0.19 0.34 16 14 C -0.07 0.24 3.78 -90.96 -0.34 -0.10 16 15 H 0.10 -0.35 7.45 -51.93 -0.39 -0.74 16 16 C -0.12 0.20 5.29 -104.54 -0.55 -0.35 16 17 C 0.13 -0.04 7.24 -39.43 -0.29 -0.33 16 18 F -0.13 -0.05 16.36 2.25 0.04 -0.01 16 19 C -0.19 0.04 10.01 -39.45 -0.39 -0.36 16 20 C 0.13 0.01 7.30 -39.43 -0.29 -0.28 16 21 F -0.13 -0.19 17.27 2.25 0.04 -0.15 16 22 C -0.16 0.25 10.02 -39.51 -0.40 -0.15 16 23 C -0.06 0.15 8.61 -39.60 -0.34 -0.19 16 24 C -0.14 0.41 7.25 -25.92 -0.19 0.22 16 25 C 0.11 0.35 6.80 -83.99 -0.57 -0.23 16 26 C -0.13 -0.31 10.00 -39.43 -0.39 -0.70 16 27 C -0.10 -0.21 10.01 -39.54 -0.40 -0.60 16 28 C -0.15 -0.39 9.97 -39.95 -0.40 -0.78 16 29 C -0.07 -0.24 10.05 -39.64 -0.40 -0.64 16 30 C -0.09 -0.36 6.35 -105.14 -0.67 -1.02 16 31 H 0.38 -1.00 8.70 45.56 0.40 -0.60 16 32 H 0.11 0.26 7.96 -51.93 -0.41 -0.15 16 33 H -0.26 -0.69 7.11 56.52 0.40 -0.28 16 34 H -0.25 -0.72 7.11 56.52 0.40 -0.32 16 35 H 0.17 -0.57 6.35 -52.49 -0.33 -0.90 16 36 H 0.12 -0.61 8.14 -51.93 -0.42 -1.03 16 37 H 0.12 -0.83 8.12 -51.93 -0.42 -1.25 16 38 H 0.40 -2.56 8.70 -40.82 -0.36 -2.91 16 39 H 0.08 -0.35 8.14 -51.93 -0.42 -0.77 16 40 H 0.10 -0.43 7.72 -51.93 -0.40 -0.83 16 41 H 0.15 -0.18 8.06 -52.49 -0.42 -0.60 16 42 H 0.14 -0.45 8.06 -52.48 -0.42 -0.87 16 43 H 0.15 -0.66 6.66 -52.49 -0.35 -1.01 16 44 H 0.10 -0.33 6.31 -51.93 -0.33 -0.66 16 45 H 0.08 -0.15 8.14 -51.93 -0.42 -0.57 16 46 H 0.11 0.05 8.06 -52.48 -0.42 -0.38 16 47 H 0.12 0.00 8.06 -52.49 -0.42 -0.42 16 48 H 0.12 0.09 8.06 -52.49 -0.42 -0.33 16 49 H 0.12 0.35 8.06 -52.49 -0.42 -0.07 16 LS Contribution 420.44 15.07 6.34 6.34 Total: 0.00 -11.47 420.44 -12.55 -24.02 By element: Atomic # 1 Polarization: -9.19 SS G_CDS: -5.98 Total: -15.18 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -6.84 Total: -7.62 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -0.54 Total: 1.59 kcal Atomic # 8 Polarization: -3.16 SS G_CDS: -0.36 Total: -3.52 kcal Atomic # 9 Polarization: -0.24 SS G_CDS: 0.08 Total: -0.17 kcal Atomic # 14 Polarization: -0.24 SS G_CDS: -5.23 Total: -5.47 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -11.47 -12.55 -24.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.546 kcal (2) G-P(sol) polarization free energy of solvation -11.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds