Wall clock time and date at job start Sun Mar 7 2021 00:10:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86299 * 109.47126 * 2 1 4 4 C 1.50699 * 109.47240 * 120.00110 * 2 1 3 5 5 C 1.34244 * 126.49772 * 255.31625 * 4 2 1 6 6 N 1.36835 * 109.93369 * 180.16632 * 5 4 2 7 7 C 1.46501 * 125.05794 * 179.81566 * 6 5 4 8 8 C 1.50704 * 109.47007 * 264.69756 * 7 6 5 9 9 O 1.21275 * 119.99872 * 359.97438 * 8 7 6 10 10 N 1.34771 * 119.99663 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99666 * 179.97438 * 10 8 7 12 12 H 1.08994 * 112.84854 * 23.80132 * 11 10 8 13 13 C 1.53782 * 113.61238 * 154.99812 * 11 10 8 14 14 C 1.53776 * 87.08270 * 89.11635 * 13 11 10 15 15 H 1.09000 * 113.61768 * 270.79938 * 14 13 11 16 16 C 1.50703 * 113.61616 * 139.97816 * 14 13 11 17 17 C 1.38455 * 119.98567 * 119.99888 * 16 14 13 18 18 F 1.35101 * 120.01385 * 359.70554 * 17 16 14 19 19 C 1.38440 * 119.97269 * 179.97438 * 17 16 14 20 20 C 1.38399 * 119.95071 * 0.02562 * 19 17 16 21 21 F 1.35098 * 120.01049 * 179.97438 * 20 19 17 22 22 C 1.38492 * 119.97296 * 359.97438 * 20 19 17 23 23 C 1.38185 * 120.02825 * 359.97438 * 22 20 19 24 24 C 1.53776 * 87.08249 * 25.43025 * 14 13 11 25 25 C 1.37688 * 109.87530 * 359.54897 * 6 5 4 26 26 C 1.39091 * 133.51334 * 180.23750 * 25 6 5 27 27 C 1.37787 * 119.77928 * 180.02562 * 26 25 6 28 28 C 1.38791 * 120.66690 * 0.02562 * 27 26 25 29 29 C 1.36662 * 120.52726 * 359.97438 * 28 27 26 30 30 C 1.39596 * 119.76591 * 0.02562 * 29 28 27 31 31 H 0.96700 * 113.99857 * 299.99846 * 1 2 3 32 32 H 1.08996 * 109.47008 * 239.99897 * 2 1 3 33 33 H 1.48499 * 109.99906 * 178.68049 * 3 2 1 34 34 H 1.48498 * 109.99828 * 300.00069 * 3 2 1 35 35 H 1.08000 * 125.03099 * 0.02562 * 5 4 2 36 36 H 1.09004 * 109.46958 * 144.69804 * 7 6 5 37 37 H 1.09005 * 109.47571 * 24.69769 * 7 6 5 38 38 H 0.96999 * 120.00851 * 359.97438 * 10 8 7 39 39 H 1.08995 * 113.61749 * 334.56394 * 13 11 10 40 40 H 1.09000 * 113.61056 * 203.66167 * 13 11 10 41 41 H 1.08000 * 120.02408 * 179.97438 * 19 17 16 42 42 H 1.08003 * 119.98709 * 180.02562 * 22 20 19 43 43 H 1.08001 * 119.97561 * 179.97438 * 23 22 20 44 44 H 1.09001 * 113.61918 * 89.11855 * 24 14 13 45 45 H 1.09006 * 113.62044 * 220.01972 * 24 14 13 46 46 H 1.08006 * 120.10764 * 0.05577 * 26 25 6 47 47 H 1.07997 * 119.66522 * 180.02562 * 27 26 25 48 48 H 1.07999 * 119.73605 * 179.97438 * 28 27 26 49 49 H 1.07994 * 120.11861 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4555 -0.1372 2.3254 6 7 2.8028 -1.0990 3.2346 7 6 3.4076 -0.8403 4.5436 8 6 4.9059 -0.9626 4.4378 9 8 5.4181 -1.2391 3.3738 10 7 5.6766 -0.7657 5.5258 11 6 7.1331 -0.8851 5.4230 12 1 7.5005 -0.7235 4.4097 13 6 7.8939 -0.0803 6.4899 14 6 7.8014 -1.3279 7.3842 15 1 6.9011 -1.3594 7.9979 16 6 9.0567 -1.6002 8.1723 17 6 9.0135 -1.6240 9.5560 18 9 7.8476 -1.3973 10.1997 19 6 10.1668 -1.8748 10.2797 20 6 11.3617 -2.1009 9.6190 21 9 12.4879 -2.3451 10.3241 22 6 11.4024 -2.0765 8.2349 23 6 10.2505 -1.8272 7.5135 24 6 7.6959 -2.1514 6.0898 25 6 2.4939 -2.3456 2.7384 26 6 2.6294 -3.6362 3.2391 27 6 2.2159 -4.7108 2.4822 28 6 1.6651 -4.5194 1.2227 29 6 1.5227 -3.2601 0.7114 30 6 1.9349 -2.1570 1.4610 31 1 -0.3933 0.4417 0.7651 32 1 1.7923 -0.5138 -0.8899 33 1 3.5346 1.7702 0.0321 34 1 1.5615 2.4678 -1.2085 35 1 2.5858 0.9256 2.4667 36 1 3.0339 -1.5658 5.2662 37 1 3.1475 0.1662 4.8716 38 1 5.2670 -0.5449 6.3769 39 1 7.3358 0.7739 6.8730 40 1 8.9134 0.1744 6.2000 41 1 10.1341 -1.8932 11.3590 42 1 12.3347 -2.2533 7.7191 43 1 10.2833 -1.8080 6.4342 44 1 8.6611 -2.4629 5.6905 45 1 6.9777 -2.9693 6.1498 46 1 3.0567 -3.7954 4.2181 47 1 2.3216 -5.7120 2.8729 48 1 1.3464 -5.3725 0.6422 49 1 1.0928 -3.1188 -0.2692 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_9818708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:33 Heat of formation + Delta-G solvation = -26.329076 kcal Electronic energy + Delta-G solvation = -35973.433735 eV Core-core repulsion = 30890.871266 eV Total energy + Delta-G solvation = -5082.562469 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 399.143 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -50.08299 -50.05952 -42.53347 -41.49723 -40.21455 -38.75821 -38.07866 -37.56329 -34.71420 -33.97243 -31.96580 -31.68916 -31.20429 -30.22701 -28.92795 -26.74097 -26.38256 -25.57568 -24.30559 -23.76895 -23.05774 -22.63352 -21.81975 -20.66189 -20.27819 -19.36801 -18.66174 -18.47475 -18.19637 -17.70334 -17.37549 -17.09788 -17.06215 -16.83217 -16.55884 -16.41891 -16.38875 -16.25174 -16.00376 -15.59586 -15.50684 -15.41287 -15.19974 -15.02839 -14.76691 -14.70132 -14.39058 -14.06599 -14.04255 -13.79340 -13.64535 -13.57706 -13.48275 -13.17483 -12.82875 -12.71083 -12.59286 -12.56678 -12.25934 -12.12588 -12.06589 -11.81755 -11.74287 -11.33671 -11.14865 -10.55069 -10.30424 -10.17758 -10.09415 -9.61249 -9.15451 -8.62097 -5.04829 -0.14470 -0.05224 0.14437 0.63226 1.34822 1.42892 1.46013 1.64820 1.76034 2.00669 2.19989 2.26216 2.80604 2.94610 3.28568 3.43400 3.47120 3.56949 3.62260 3.65818 3.67585 3.71059 3.76676 3.85821 3.89009 3.92580 4.05510 4.06811 4.15649 4.18411 4.21616 4.30211 4.48537 4.56385 4.58820 4.68225 4.71874 4.72419 4.78731 4.80966 4.83304 4.88322 4.89567 4.90201 4.99068 5.05840 5.09992 5.13328 5.25134 5.50376 5.55790 5.65828 5.70823 5.73258 5.75586 6.20534 6.24058 6.48250 6.89480 7.14675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.042 4.042 3 Si 0.802 3.198 4 C -0.226 4.226 5 C 0.081 3.919 6 N -0.466 5.466 7 C 0.087 3.913 8 C 0.494 3.506 9 O -0.572 6.572 10 N -0.696 5.696 11 C 0.117 3.883 12 H 0.086 0.914 13 C -0.122 4.122 14 C -0.069 4.069 15 H 0.109 0.891 16 C -0.112 4.112 17 C 0.118 3.882 18 F -0.135 7.135 19 C -0.198 4.198 20 C 0.107 3.893 21 F -0.143 7.143 22 C -0.156 4.156 23 C -0.057 4.057 24 C -0.140 4.140 25 C 0.091 3.909 26 C -0.133 4.133 27 C -0.109 4.109 28 C -0.154 4.154 29 C -0.091 4.091 30 C -0.117 4.117 31 H 0.393 0.607 32 H 0.087 0.913 33 H -0.294 1.294 34 H -0.299 1.299 35 H 0.209 0.791 36 H 0.143 0.857 37 H 0.169 0.831 38 H 0.420 0.580 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.151 0.849 42 H 0.160 0.840 43 H 0.168 0.832 44 H 0.103 0.897 45 H 0.068 0.932 46 H 0.133 0.867 47 H 0.145 0.855 48 H 0.135 0.865 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.442 4.205 6.795 8.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.151 4.151 3 Si 0.708 3.292 4 C -0.234 4.234 5 C -0.044 4.044 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.280 3.720 9 O -0.449 6.449 10 N -0.349 5.349 11 C 0.011 3.989 12 H 0.104 0.896 13 C -0.159 4.159 14 C -0.087 4.087 15 H 0.127 0.873 16 C -0.113 4.113 17 C 0.099 3.901 18 F -0.114 7.114 19 C -0.218 4.218 20 C 0.088 3.912 21 F -0.121 7.121 22 C -0.175 4.175 23 C -0.075 4.075 24 C -0.179 4.179 25 C -0.014 4.014 26 C -0.153 4.153 27 C -0.128 4.128 28 C -0.173 4.173 29 C -0.110 4.110 30 C -0.122 4.122 31 H 0.243 0.757 32 H 0.105 0.895 33 H -0.221 1.221 34 H -0.227 1.227 35 H 0.226 0.774 36 H 0.161 0.839 37 H 0.187 0.813 38 H 0.258 0.742 39 H 0.110 0.890 40 H 0.125 0.875 41 H 0.169 0.831 42 H 0.178 0.822 43 H 0.186 0.814 44 H 0.121 0.879 45 H 0.087 0.913 46 H 0.151 0.849 47 H 0.162 0.838 48 H 0.153 0.847 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.607 4.372 5.446 7.010 hybrid contribution 0.249 -1.019 0.401 1.123 sum 0.857 3.353 5.846 6.794 Atomic orbital electron populations 1.86453 1.17795 1.82393 1.50211 1.24585 0.84680 1.10441 0.95392 0.94134 0.76675 0.73461 0.84959 1.20788 1.12101 0.91871 0.98602 1.22080 0.98686 0.95357 0.88321 1.43439 1.51827 1.03749 1.15819 1.22019 0.88416 1.09380 0.83907 1.21477 0.90650 0.76083 0.83795 1.90809 1.75729 1.48334 1.30077 1.45512 1.06088 1.70927 1.12343 1.21799 0.80104 0.97050 0.99917 0.89599 1.23399 1.02138 0.96487 0.93924 1.21552 0.94761 0.97907 0.94527 0.87328 1.19986 0.97571 1.02736 0.91004 1.17274 0.81124 1.01468 0.90238 1.91505 1.45949 1.91969 1.81951 1.21180 0.91332 1.06834 1.02450 1.17571 0.81895 1.01418 0.90365 1.91525 1.49703 1.91740 1.79161 1.21508 1.01726 1.02879 0.91401 1.21049 0.89498 0.95141 1.01796 1.23579 1.02609 0.97047 0.94639 1.18379 1.01536 0.87109 0.94393 1.20247 1.04530 0.89117 1.01399 1.21120 0.98312 0.99052 0.94329 1.20904 1.02406 0.96965 0.97022 1.20440 0.99310 0.91853 0.99384 1.19369 1.03998 0.93929 0.94870 0.75693 0.89507 1.22105 1.22671 0.77428 0.83915 0.81315 0.74185 0.89046 0.87496 0.83112 0.82245 0.81428 0.87891 0.91283 0.84878 0.83761 0.84737 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.26 12.88 -148.98 -1.92 -4.18 16 2 C -0.04 -0.17 3.06 71.24 0.22 0.05 16 3 Si 0.80 -0.65 30.76 68.60 2.11 1.46 16 4 C -0.23 -1.20 5.57 -18.63 -0.10 -1.30 16 5 C 0.08 -0.03 9.89 83.00 0.82 0.79 16 6 N -0.47 -0.19 2.27 -519.96 -1.18 -1.37 16 7 C 0.09 -0.77 6.48 85.63 0.56 -0.22 16 8 C 0.49 -1.32 7.90 87.66 0.69 -0.63 16 9 O -0.57 -5.44 16.02 -3.01 -0.05 -5.49 16 10 N -0.70 6.05 5.26 -440.04 -2.32 3.73 16 11 C 0.12 -0.74 4.32 45.52 0.20 -0.55 16 12 H 0.09 -0.09 7.46 -2.39 -0.02 -0.11 16 13 C -0.12 1.18 7.29 31.12 0.23 1.41 16 14 C -0.07 0.55 3.78 -11.02 -0.04 0.51 16 15 H 0.11 -0.93 7.45 -2.39 -0.02 -0.95 16 16 C -0.11 0.50 5.29 -19.81 -0.10 0.40 16 17 C 0.12 -0.10 7.24 22.37 0.16 0.06 16 18 F -0.14 -0.07 16.36 44.97 0.74 0.66 16 19 C -0.20 -0.03 10.01 22.36 0.22 0.19 16 20 C 0.11 0.06 7.30 22.37 0.16 0.22 16 21 F -0.14 -0.55 17.27 44.97 0.78 0.23 16 22 C -0.16 0.58 10.02 22.32 0.22 0.80 16 23 C -0.06 0.36 8.61 22.25 0.19 0.55 16 24 C -0.14 0.95 7.25 31.12 0.23 1.18 16 25 C 0.09 0.62 6.80 39.03 0.27 0.88 16 26 C -0.13 -0.66 10.00 22.37 0.22 -0.44 16 27 C -0.11 -0.55 10.01 22.30 0.22 -0.33 16 28 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 29 C -0.09 -0.92 10.05 22.23 0.22 -0.70 16 30 C -0.12 -1.17 6.35 -20.20 -0.13 -1.30 16 31 H 0.39 -2.05 8.70 -74.06 -0.64 -2.69 16 32 H 0.09 0.67 7.96 -2.39 -0.02 0.65 16 33 H -0.29 -1.60 7.11 99.48 0.71 -0.90 16 34 H -0.30 -1.92 7.11 99.48 0.71 -1.21 16 35 H 0.21 -1.96 6.35 -2.91 -0.02 -1.98 16 36 H 0.14 -1.93 8.14 -2.39 -0.02 -1.95 16 37 H 0.17 -3.00 8.12 -2.38 -0.02 -3.02 16 38 H 0.42 -6.49 8.70 -92.71 -0.81 -7.29 16 39 H 0.09 -1.03 8.14 -2.39 -0.02 -1.05 16 40 H 0.11 -1.11 7.72 -2.39 -0.02 -1.13 16 41 H 0.15 -0.19 8.06 -2.91 -0.02 -0.22 16 42 H 0.16 -1.15 8.06 -2.91 -0.02 -1.17 16 43 H 0.17 -1.87 6.66 -2.91 -0.02 -1.89 16 44 H 0.10 -0.81 6.31 -2.39 -0.02 -0.83 16 45 H 0.07 -0.32 8.14 -2.38 -0.02 -0.34 16 46 H 0.13 0.00 8.06 -2.91 -0.02 -0.02 16 47 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 48 H 0.13 0.42 8.06 -2.91 -0.02 0.40 16 49 H 0.12 1.10 8.06 -2.91 -0.02 1.08 16 Total: 0.00 -31.33 420.44 2.46 -28.87 By element: Atomic # 1 Polarization: -24.26 SS G_CDS: -0.38 Total: -24.64 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 4.68 Total: 0.72 kcal Atomic # 7 Polarization: 5.86 SS G_CDS: -3.50 Total: 2.36 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: -1.97 Total: -9.67 kcal Atomic # 9 Polarization: -0.62 SS G_CDS: 1.51 Total: 0.89 kcal Atomic # 14 Polarization: -0.65 SS G_CDS: 2.11 Total: 1.46 kcal Total: -31.33 2.46 -28.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_9818708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.545 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds