Wall clock time and date at job start Sun Mar 7 2021 00:10:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.36763 * 125.80248 * 2 1 4 4 C 1.47265 * 126.94156 * 359.95926 * 3 2 1 5 5 O 1.21633 * 119.99935 * 359.71453 * 4 3 2 6 6 N 1.34773 * 120.00141 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00431 * 179.72637 * 6 4 3 8 8 H 1.09006 * 112.84642 * 336.19847 * 7 6 4 9 9 C 1.53774 * 113.61696 * 107.50253 * 7 6 4 10 10 C 1.53777 * 87.08072 * 89.12070 * 9 7 6 11 11 H 1.08997 * 113.69135 * 270.87338 * 10 9 7 12 12 C 1.50701 * 113.61682 * 139.98651 * 10 9 7 13 13 C 1.38447 * 119.99051 * 142.23118 * 12 10 9 14 14 F 1.35098 * 120.01031 * 359.97438 * 13 12 10 15 15 C 1.38442 * 119.97512 * 179.74926 * 13 12 10 16 16 C 1.38400 * 119.94828 * 0.49362 * 15 13 12 17 17 F 1.35104 * 120.01602 * 179.72828 * 16 15 13 18 18 C 1.38497 * 119.97341 * 359.75837 * 16 15 13 19 19 C 1.38183 * 120.02802 * 0.02562 * 18 16 15 20 20 C 1.53780 * 113.61736 * 205.00698 * 7 6 4 21 21 C 1.46680 * 106.11701 * 179.70325 * 3 2 1 22 22 C 1.34489 * 106.33285 * 0.25966 * 21 3 2 23 23 C 1.50698 * 125.56960 * 180.02562 * 22 21 3 24 24 O 1.42894 * 109.47181 * 299.99444 * 23 22 21 25 25 Si 1.86308 * 109.46720 * 180.02562 * 23 22 21 26 26 N 1.34659 * 125.80306 * 180.14637 * 2 1 3 27 27 H 1.08999 * 109.47087 * 89.99952 * 1 2 3 28 28 H 1.08995 * 109.46727 * 210.00290 * 1 2 3 29 29 H 1.08999 * 109.47160 * 330.00113 * 1 2 3 30 30 H 0.97000 * 120.00112 * 359.73074 * 6 4 3 31 31 H 1.09001 * 113.61556 * 203.66763 * 9 7 6 32 32 H 1.09000 * 113.61618 * 334.56933 * 9 7 6 33 33 H 1.07998 * 120.02892 * 180.25228 * 15 13 12 34 34 H 1.08006 * 119.98641 * 179.97438 * 18 16 15 35 35 H 1.07999 * 119.97449 * 179.97438 * 19 18 16 36 36 H 1.09002 * 113.61835 * 25.42623 * 20 7 6 37 37 H 1.08996 * 113.61604 * 156.24957 * 20 7 6 38 38 H 1.07998 * 126.83633 * 180.28320 * 21 3 2 39 39 H 1.08996 * 109.47858 * 59.99846 * 23 22 21 40 40 H 0.96701 * 114.00703 * 300.00685 * 24 23 22 41 41 H 1.48502 * 109.99878 * 179.97438 * 25 23 22 42 42 H 1.48501 * 109.99623 * 301.31527 * 25 23 22 43 43 H 0.97006 * 124.84591 * 0.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3071 1.1092 0.0000 4 6 1.8703 2.5156 -0.0008 5 8 0.6839 2.7839 -0.0069 6 7 2.7850 3.5054 -0.0002 7 6 2.3505 4.9044 -0.0071 8 1 1.3491 5.0346 -0.4175 9 6 2.5664 5.6232 1.3351 10 6 3.9652 5.9996 0.8188 11 1 4.7310 5.2590 1.0492 12 6 4.3826 7.4031 1.1749 13 6 5.6975 7.6681 1.5178 14 9 6.6062 6.6685 1.5338 15 6 6.0818 8.9585 1.8398 16 6 5.1486 9.9805 1.8284 17 9 5.5210 11.2393 2.1477 18 6 3.8327 9.7121 1.4900 19 6 3.4512 8.4245 1.1645 20 6 3.3899 5.8694 -0.6014 21 6 3.6882 0.6151 0.0073 22 6 3.6096 -0.7275 0.0052 23 6 4.7820 -1.6742 0.0113 24 8 5.5829 -1.4481 -1.1503 25 14 4.1615 -3.4309 0.0045 26 7 2.2948 -1.0921 -0.0028 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3632 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5138 30 1 3.7311 3.2914 0.0048 31 1 1.9098 6.4807 1.4817 32 1 2.5838 4.9506 2.1927 33 1 7.1082 9.1669 2.1035 34 1 3.1042 10.5095 1.4814 35 1 2.4247 8.2162 0.9012 36 1 4.0723 5.3957 -1.3072 37 1 2.9583 6.7937 -0.9855 38 1 4.5890 1.2109 0.0135 39 1 5.3821 -1.5039 0.9051 40 1 5.1125 -1.5817 -1.9846 41 1 5.3081 -4.3746 0.0098 42 1 3.3008 -3.6701 1.1908 43 1 1.9734 -2.0074 -0.0055 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13428180_9865296.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:10:38 Heat of formation + Delta-G solvation = -57.625624 kcal Electronic energy + Delta-G solvation = -29609.990026 eV Core-core repulsion = 25066.286477 eV Total energy + Delta-G solvation = -4543.703549 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.128 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -50.08052 -50.04442 -42.49619 -41.35282 -39.92288 -38.57393 -37.71696 -34.55398 -32.78825 -32.30593 -31.82731 -31.21238 -28.90411 -26.70075 -26.51856 -25.44573 -24.32856 -23.57820 -22.67016 -21.55494 -20.76223 -20.11810 -19.31436 -18.67716 -18.24881 -17.84099 -17.20682 -17.05413 -16.97898 -16.80813 -16.57984 -16.44701 -16.37461 -15.83830 -15.61420 -15.47079 -15.24963 -15.04880 -14.90271 -14.51075 -14.42985 -14.07375 -13.96097 -13.86360 -13.67684 -13.53453 -13.40385 -13.34124 -12.81774 -12.67433 -12.56366 -12.54490 -12.24879 -12.02119 -11.69983 -11.28640 -10.95520 -10.49318 -10.14489 -10.08267 -9.81181 -9.59326 -9.15198 -5.14452 -0.12647 -0.03460 0.69961 1.12603 1.26591 1.49666 1.83831 2.02716 2.28129 2.39468 2.51797 2.82138 3.31327 3.43243 3.45774 3.49998 3.67324 3.69908 3.71946 3.87589 3.88713 3.95399 4.08505 4.09752 4.18459 4.23810 4.44559 4.50992 4.63606 4.71052 4.74508 4.75372 4.77349 4.84128 4.87192 4.91723 4.93321 5.02300 5.04724 5.08634 5.14798 5.25900 5.32463 5.66084 5.69937 5.72769 5.86195 6.42371 6.64276 6.72075 7.34776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.120 3.880 3 C -0.266 4.266 4 C 0.591 3.409 5 O -0.582 6.582 6 N -0.703 5.703 7 C 0.118 3.882 8 H 0.096 0.904 9 C -0.138 4.138 10 C -0.072 4.072 11 H 0.098 0.902 12 C -0.111 4.111 13 C 0.114 3.886 14 F -0.139 7.139 15 C -0.198 4.198 16 C 0.107 3.893 17 F -0.142 7.142 18 C -0.154 4.154 19 C -0.055 4.055 20 C -0.123 4.123 21 C -0.139 4.139 22 C -0.024 4.024 23 C -0.039 4.039 24 O -0.548 6.548 25 Si 0.766 3.234 26 N -0.534 5.534 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.409 0.591 31 H 0.111 0.889 32 H 0.064 0.936 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.173 0.827 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.154 0.846 39 H 0.121 0.879 40 H 0.396 0.604 41 H -0.291 1.291 42 H -0.276 1.276 43 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.329 -3.426 -2.962 5.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.000 4.000 3 C -0.276 4.276 4 C 0.381 3.619 5 O -0.464 6.464 6 N -0.353 5.353 7 C 0.013 3.987 8 H 0.114 0.886 9 C -0.176 4.176 10 C -0.090 4.090 11 H 0.116 0.884 12 C -0.112 4.112 13 C 0.095 3.905 14 F -0.117 7.117 15 C -0.218 4.218 16 C 0.088 3.912 17 F -0.121 7.121 18 C -0.172 4.172 19 C -0.073 4.073 20 C -0.161 4.161 21 C -0.163 4.163 22 C -0.132 4.132 23 C -0.150 4.150 24 O -0.356 6.356 25 Si 0.670 3.330 26 N -0.135 5.135 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.100 0.900 30 H 0.245 0.755 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.168 0.832 34 H 0.181 0.819 35 H 0.190 0.810 36 H 0.100 0.900 37 H 0.132 0.868 38 H 0.171 0.829 39 H 0.138 0.862 40 H 0.247 0.753 41 H -0.218 1.218 42 H -0.203 1.203 43 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -2.658 -4.008 -2.108 5.251 hybrid contribution 1.340 0.223 0.716 1.535 sum -1.319 -3.785 -1.392 4.243 Atomic orbital electron populations 1.20623 0.85926 1.04522 1.04290 1.20582 0.94343 0.85537 0.99531 1.20182 0.94054 0.91807 1.21529 1.17566 0.84987 0.84843 0.74467 1.90726 1.17909 1.84907 1.52867 1.45402 1.09934 1.04945 1.74993 1.21830 0.99489 0.80117 0.97312 0.88620 1.23589 0.95509 1.01073 0.97452 1.21514 0.97712 0.91900 0.97914 0.88409 1.19986 0.91333 0.97752 1.02146 1.17335 0.87012 0.84321 1.01866 1.91499 1.66486 1.59637 1.94093 1.21159 1.02062 0.91552 1.07007 1.17560 0.93901 0.78932 1.00820 1.91525 1.92267 1.37934 1.90327 1.21524 0.94355 0.99537 1.01804 1.21076 1.00775 0.89863 0.95553 1.23417 0.97347 1.00161 0.95152 1.21937 0.95402 0.93269 1.05728 1.20675 0.84777 0.95604 1.12162 1.24588 0.91185 1.07301 0.91933 1.86514 1.39675 1.93102 1.16277 0.94296 0.80961 0.72152 0.85576 1.41678 1.05136 1.08809 1.57839 0.89334 0.89285 0.90032 0.75490 0.87033 0.91736 0.83184 0.81889 0.81017 0.89990 0.86759 0.82878 0.86196 0.75334 1.21799 1.20267 0.73214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.09 9.88 71.24 0.70 0.79 16 2 C 0.12 0.14 7.17 41.78 0.30 0.44 16 3 C -0.27 -1.07 6.29 -19.04 -0.12 -1.19 16 4 C 0.59 3.97 7.81 86.62 0.68 4.64 16 5 O -0.58 -7.41 14.42 -4.14 -0.06 -7.46 16 6 N -0.70 -0.72 5.26 -443.45 -2.33 -3.05 16 7 C 0.12 -0.12 4.32 45.51 0.20 0.08 16 8 H 0.10 0.19 7.46 -2.38 -0.02 0.17 16 9 C -0.14 0.37 7.25 31.12 0.23 0.59 16 10 C -0.07 0.21 3.78 -11.01 -0.04 0.17 16 11 H 0.10 -0.16 7.44 -2.39 -0.02 -0.18 16 12 C -0.11 0.14 5.30 -19.81 -0.10 0.03 16 13 C 0.11 0.28 7.24 22.37 0.16 0.45 16 14 F -0.14 -0.67 16.36 44.97 0.74 0.07 16 15 C -0.20 -0.50 10.01 22.36 0.22 -0.28 16 16 C 0.11 0.23 7.30 22.37 0.16 0.39 16 17 F -0.14 -0.72 17.27 44.97 0.78 0.06 16 18 C -0.15 0.37 10.02 22.32 0.22 0.60 16 19 C -0.06 0.24 8.61 22.26 0.19 0.43 16 20 C -0.12 0.59 7.29 31.12 0.23 0.81 16 21 C -0.14 -0.11 10.43 23.62 0.25 0.14 16 22 C -0.02 0.05 6.11 40.98 0.25 0.30 16 23 C -0.04 0.15 2.98 71.24 0.21 0.37 16 24 O -0.55 1.62 12.87 -148.98 -1.92 -0.30 16 25 Si 0.77 -4.81 30.94 68.60 2.12 -2.69 16 26 N -0.53 1.89 5.41 -171.07 -0.93 0.97 16 27 H 0.09 -0.19 8.14 -2.39 -0.02 -0.21 16 28 H 0.09 -0.52 8.14 -2.39 -0.02 -0.54 16 29 H 0.08 0.36 6.47 -2.39 -0.02 0.34 16 30 H 0.41 -1.02 7.82 -92.71 -0.73 -1.74 16 31 H 0.11 -0.65 6.31 -2.39 -0.02 -0.67 16 32 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.15 0.16 8.06 -2.91 -0.02 0.13 16 34 H 0.16 -1.06 8.06 -2.91 -0.02 -1.09 16 35 H 0.17 -1.70 6.65 -2.91 -0.02 -1.72 16 36 H 0.08 -0.39 8.14 -2.39 -0.02 -0.41 16 37 H 0.11 -0.84 7.73 -2.39 -0.02 -0.86 16 38 H 0.15 -0.25 7.70 -2.91 -0.02 -0.27 16 39 H 0.12 -0.36 7.96 -2.39 -0.02 -0.38 16 40 H 0.40 -4.19 8.70 -74.06 -0.64 -4.84 16 41 H -0.29 -0.53 7.11 99.48 0.71 0.17 16 42 H -0.28 0.61 7.11 99.48 0.71 1.32 16 43 H 0.43 -3.90 6.70 -92.70 -0.62 -4.52 16 Total: 0.00 -20.21 368.16 1.29 -18.92 By element: Atomic # 1 Polarization: -14.44 SS G_CDS: -0.85 Total: -15.28 kcal Atomic # 6 Polarization: 5.03 SS G_CDS: 3.74 Total: 8.77 kcal Atomic # 7 Polarization: 1.18 SS G_CDS: -3.26 Total: -2.08 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -1.98 Total: -7.76 kcal Atomic # 9 Polarization: -1.38 SS G_CDS: 1.51 Total: 0.13 kcal Atomic # 14 Polarization: -4.81 SS G_CDS: 2.12 Total: -2.69 kcal Total: -20.21 1.29 -18.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13428180_9865296.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.708 kcal (2) G-P(sol) polarization free energy of solvation -20.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds