Wall clock time and date at job start Sat Mar 6 2021 19:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35541 * 125.67842 * 2 1 4 4 C 1.35451 * 108.87159 * 180.30544 * 3 2 1 5 5 C 1.50701 * 126.06601 * 179.75286 * 4 3 2 6 6 O 1.42896 * 109.47056 * 244.97234 * 5 4 3 7 7 Si 1.86299 * 109.47208 * 4.97915 * 5 4 3 8 8 C 1.39837 * 107.86649 * 359.73074 * 4 3 2 9 9 C 1.37647 * 125.68075 * 179.84928 * 2 1 3 10 10 C 1.46681 * 126.23016 * 359.95788 * 9 2 1 11 11 O 1.21685 * 120.00105 * 354.04123 * 10 9 2 12 12 N 1.34773 * 119.99749 * 174.30887 * 10 9 2 13 13 C 1.46505 * 120.00241 * 184.91477 * 12 10 9 14 14 H 1.09004 * 112.84460 * 23.79982 * 13 12 10 15 15 C 1.53777 * 113.61791 * 155.00126 * 13 12 10 16 16 C 1.53781 * 87.07990 * 139.98170 * 15 13 12 17 17 H 1.09000 * 113.61439 * 89.20042 * 16 15 13 18 18 C 1.52999 * 113.61259 * 220.01512 * 16 15 13 19 19 N 1.46504 * 109.47074 * 185.00119 * 18 16 15 20 20 C 1.34771 * 119.99737 * 180.02562 * 19 18 16 21 21 O 1.21508 * 120.00473 * 359.97438 * 20 19 18 22 22 O 1.34635 * 119.99967 * 180.02562 * 20 19 18 23 23 C 1.45195 * 117.00388 * 179.97438 * 22 20 19 24 24 C 1.52996 * 109.47446 * 59.99433 * 23 22 20 25 25 C 1.53001 * 109.47240 * 179.97438 * 23 22 20 26 26 C 1.53007 * 109.47050 * 299.99746 * 23 22 20 27 27 C 1.53774 * 87.08217 * 334.56628 * 16 15 13 28 28 H 1.09005 * 109.46963 * 274.17651 * 1 2 3 29 29 H 1.09000 * 109.47265 * 34.17491 * 1 2 3 30 30 H 1.08999 * 109.47113 * 154.17461 * 1 2 3 31 31 H 1.07999 * 125.56086 * 0.03920 * 3 2 1 32 32 H 1.09004 * 109.47147 * 124.97578 * 5 4 3 33 33 H 0.96700 * 114.00024 * 60.00387 * 6 5 4 34 34 H 1.48499 * 110.00342 * 58.67838 * 7 5 4 35 35 H 1.48496 * 109.99922 * 179.97438 * 7 5 4 36 36 H 1.07998 * 126.45928 * 180.02562 * 8 4 3 37 37 H 0.97007 * 120.00200 * 4.91896 * 12 10 9 38 38 H 1.09000 * 113.61387 * 254.53245 * 15 13 12 39 39 H 1.09006 * 113.61296 * 25.34455 * 15 13 12 40 40 H 1.08996 * 109.47303 * 305.00533 * 18 16 15 41 41 H 1.09007 * 109.46954 * 65.00175 * 18 16 15 42 42 H 0.96998 * 119.99622 * 359.97438 * 19 18 16 43 43 H 1.09002 * 109.46702 * 60.00200 * 24 23 22 44 44 H 1.08999 * 109.47869 * 179.97438 * 24 23 22 45 45 H 1.09004 * 109.47378 * 300.00664 * 24 23 22 46 46 H 1.08998 * 109.47248 * 59.99559 * 25 23 22 47 47 H 1.09006 * 109.47264 * 180.02562 * 25 23 22 48 48 H 1.08998 * 109.46756 * 299.99434 * 25 23 22 49 49 H 1.08993 * 109.47033 * 59.99624 * 26 23 22 50 50 H 1.09000 * 109.46836 * 180.02562 * 26 23 22 51 51 H 1.09005 * 109.46533 * 300.00105 * 26 23 22 52 52 H 1.08996 * 113.61932 * 270.88461 * 27 16 15 53 53 H 1.09003 * 113.61565 * 139.97879 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2555 1.1010 0.0000 4 6 3.5522 0.7094 -0.0068 5 6 4.7537 1.6190 -0.0145 6 8 5.4706 1.4508 -1.2390 7 14 4.1935 3.3891 0.1393 8 6 3.5780 -0.6888 -0.0050 9 6 2.2678 -1.1181 0.0029 10 6 1.8124 -2.5124 0.0075 11 8 0.6272 -2.7650 0.1184 12 7 2.7072 -3.5139 -0.1057 13 6 2.2455 -4.9004 -0.2096 14 1 1.2278 -4.9801 -0.5918 15 6 3.2443 -5.8308 -0.9179 16 6 2.8785 -6.8932 0.1320 17 1 2.0345 -7.5198 -0.1565 18 6 4.0779 -7.7036 0.6276 19 7 3.6139 -8.7616 1.5285 20 6 4.5017 -9.6055 2.0904 21 8 5.6870 -9.4893 1.8495 22 8 4.0752 -10.5782 2.9179 23 6 5.0870 -11.4507 3.4865 24 6 6.0763 -10.6188 4.3051 25 6 4.4174 -12.4846 4.3939 26 6 5.8337 -12.1677 2.3598 27 6 2.4949 -5.7296 1.0613 28 1 -0.3633 0.0748 1.0250 29 1 -0.3634 0.8502 -0.5773 30 1 -0.3633 -0.9250 -0.4477 31 1 1.9082 2.1236 0.0006 32 1 5.4036 1.3695 0.8243 33 1 4.9526 1.6558 -2.0294 34 1 3.4193 3.5698 1.3936 35 1 5.3692 4.2962 0.1336 36 1 4.4584 -1.3144 -0.0088 37 1 3.6569 -3.3167 -0.1184 38 1 2.9477 -6.0988 -1.9320 39 1 4.2780 -5.4906 -0.8551 40 1 4.5912 -8.1505 -0.2238 41 1 4.7645 -7.0467 1.1617 42 1 2.6677 -8.8541 1.7210 43 1 5.5443 -10.1080 5.1078 44 1 6.8356 -11.2738 4.7323 45 1 6.5534 -9.8819 3.6590 46 1 3.7124 -13.0773 3.8111 47 1 5.1770 -13.1393 4.8211 48 1 3.8859 -11.9734 5.1966 49 1 6.3107 -11.4309 1.7136 50 1 6.5929 -12.8230 2.7866 51 1 5.1289 -12.7603 1.7765 52 1 3.3239 -5.3625 1.6664 53 1 1.5934 -5.9158 1.6450 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_10803934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:52:00 Heat of formation + Delta-G solvation = -75.963711 kcal Electronic energy + Delta-G solvation = -32745.103465 eV Core-core repulsion = 28199.250318 eV Total energy + Delta-G solvation = -4545.853146 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.55789 -41.84675 -40.95671 -39.45050 -38.28010 -37.64721 -35.98198 -35.10016 -34.48616 -33.65790 -30.98275 -28.95499 -28.38861 -28.32288 -28.25857 -26.71909 -25.77744 -24.80293 -23.40615 -22.50350 -21.45371 -21.19912 -20.83448 -20.15249 -19.13620 -18.78506 -17.81524 -17.70843 -17.33941 -17.21912 -16.82411 -16.58705 -16.45684 -15.94004 -15.88465 -15.68983 -15.52344 -15.32905 -15.32375 -14.98388 -14.66596 -14.46547 -14.39428 -14.08193 -13.57738 -13.45232 -13.43986 -13.35892 -13.24411 -13.16809 -13.13914 -13.00691 -12.92527 -12.88640 -12.52081 -12.40109 -12.27757 -12.19806 -11.93504 -11.73577 -11.46566 -11.40737 -11.16094 -11.09732 -10.29707 -10.24019 -10.13332 -9.70497 -9.25985 -4.95107 0.39190 1.15893 1.41825 1.51991 1.61023 1.73385 1.73883 2.04944 2.26201 2.34367 3.10824 3.42253 3.56892 3.64553 3.71163 3.72516 3.76126 3.77567 3.81982 3.84662 3.92498 4.04545 4.18746 4.24497 4.36576 4.39429 4.40846 4.49897 4.59175 4.61292 4.66360 4.69770 4.72658 4.74321 4.75009 4.77117 4.80604 4.81965 4.85490 4.85858 4.97712 5.05715 5.07485 5.17318 5.20252 5.24946 5.27666 5.35525 5.52021 5.57700 5.68396 5.88495 6.16879 6.37281 6.45439 6.91205 7.10032 7.31893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.412 5.412 3 C 0.035 3.965 4 C -0.221 4.221 5 C -0.037 4.037 6 O -0.560 6.560 7 Si 0.780 3.220 8 C -0.114 4.114 9 C -0.080 4.080 10 C 0.587 3.413 11 O -0.583 6.583 12 N -0.698 5.698 13 C 0.120 3.880 14 H 0.104 0.896 15 C -0.123 4.123 16 C -0.108 4.108 17 H 0.116 0.884 18 C 0.151 3.849 19 N -0.700 5.700 20 C 0.641 3.359 21 O -0.595 6.595 22 O -0.371 6.371 23 C 0.126 3.874 24 C -0.180 4.180 25 C -0.138 4.138 26 C -0.179 4.179 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.202 0.798 32 H 0.100 0.900 33 H 0.393 0.607 34 H -0.285 1.285 35 H -0.305 1.305 36 H 0.155 0.845 37 H 0.414 0.586 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.416 0.584 43 H 0.060 0.940 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.069 0.931 47 H 0.098 0.902 48 H 0.068 0.932 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.062 0.938 52 H 0.088 0.912 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.979 0.984 -2.297 3.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.084 5.084 3 C -0.102 4.102 4 C -0.227 4.227 5 C -0.147 4.147 6 O -0.368 6.368 7 Si 0.687 3.313 8 C -0.140 4.140 9 C -0.193 4.193 10 C 0.376 3.624 11 O -0.465 6.465 12 N -0.348 5.348 13 C 0.016 3.984 14 H 0.122 0.878 15 C -0.161 4.161 16 C -0.127 4.127 17 H 0.135 0.865 18 C 0.029 3.971 19 N -0.360 5.360 20 C 0.394 3.606 21 O -0.486 6.486 22 O -0.285 6.285 23 C 0.090 3.910 24 C -0.237 4.237 25 C -0.195 4.195 26 C -0.237 4.237 27 C -0.184 4.184 28 H 0.098 0.902 29 H 0.134 0.866 30 H 0.105 0.895 31 H 0.219 0.781 32 H 0.117 0.883 33 H 0.243 0.757 34 H -0.212 1.212 35 H -0.233 1.233 36 H 0.173 0.827 37 H 0.252 0.748 38 H 0.110 0.890 39 H 0.122 0.878 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.253 0.747 43 H 0.079 0.921 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.088 0.912 47 H 0.117 0.883 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.105 0.895 51 H 0.081 0.919 52 H 0.106 0.894 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.127 1.296 -1.447 3.681 hybrid contribution 0.348 -0.464 0.593 0.829 sum -2.779 0.832 -0.855 3.024 Atomic orbital electron populations 1.22442 0.74824 1.06106 1.04551 1.44038 1.07653 1.04807 1.51920 1.22339 0.89714 0.92563 1.05585 1.19901 0.94249 0.94773 1.13774 1.24458 0.92565 1.08341 0.89383 1.86445 1.42189 1.92191 1.15936 0.94009 0.80262 0.72452 0.84596 1.21413 0.94300 0.95258 1.03033 1.20123 0.90944 0.87728 1.20506 1.17218 0.85386 0.84302 0.75448 1.90769 1.17874 1.85383 1.52477 1.45600 1.10036 1.05718 1.73464 1.22561 0.99763 0.78343 0.97750 0.87789 1.23314 1.00225 0.93490 0.99093 1.22536 0.98049 0.94820 0.97268 0.86550 1.21382 0.96465 0.87196 0.92051 1.44759 1.10250 1.31935 1.49067 1.18378 0.84540 0.79505 0.78151 1.90906 1.16547 1.75102 1.66087 1.86308 1.42009 1.41799 1.58420 1.22354 0.86717 0.88549 0.93362 1.22472 0.99714 1.01412 1.00105 1.21891 1.02052 0.96989 0.98545 1.22470 1.01265 1.01160 0.98771 1.23577 1.02412 0.95540 0.96906 0.90240 0.86607 0.89513 0.78101 0.88253 0.75711 1.21223 1.23288 0.82725 0.74830 0.89008 0.87835 0.91066 0.91485 0.74702 0.92058 0.89453 0.91776 0.91150 0.88303 0.91269 0.91753 0.89470 0.91912 0.89390 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.11 10.64 127.77 1.36 1.25 16 2 N -0.41 -0.58 3.16 -534.30 -1.69 -2.27 16 3 C 0.03 -0.07 9.94 83.48 0.83 0.76 16 4 C -0.22 0.03 5.43 -20.12 -0.11 -0.08 16 5 C -0.04 0.03 3.02 71.24 0.22 0.25 16 6 O -0.56 0.02 12.88 -148.98 -1.92 -1.90 16 7 Si 0.78 -2.63 30.60 68.60 2.10 -0.53 16 8 C -0.11 -0.15 10.29 22.57 0.23 0.08 16 9 C -0.08 -0.30 6.88 40.35 0.28 -0.02 16 10 C 0.59 3.10 7.77 86.45 0.67 3.77 16 11 O -0.58 -6.65 14.30 -4.30 -0.06 -6.71 16 12 N -0.70 0.77 5.34 -444.00 -2.37 -1.61 16 13 C 0.12 -0.34 4.21 45.52 0.19 -0.15 16 14 H 0.10 0.05 7.53 -2.39 -0.02 0.03 16 15 C -0.12 0.91 7.39 31.12 0.23 1.14 16 16 C -0.11 0.74 3.75 -10.27 -0.04 0.70 16 17 H 0.12 -1.00 8.14 -2.39 -0.02 -1.02 16 18 C 0.15 -0.42 5.51 86.38 0.48 0.06 16 19 N -0.70 -0.01 5.56 -590.86 -3.29 -3.30 16 20 C 0.64 4.40 8.06 129.79 1.05 5.45 16 21 O -0.60 -7.25 11.88 19.82 0.24 -7.01 16 22 O -0.37 -2.20 9.94 -55.44 -0.55 -2.76 16 23 C 0.13 0.43 1.13 -10.79 -0.01 0.42 16 24 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 25 C -0.14 0.22 8.85 71.98 0.64 0.86 16 26 C -0.18 -0.63 8.37 71.98 0.60 -0.03 16 27 C -0.15 0.59 7.43 31.12 0.23 0.82 16 28 H 0.08 -0.18 8.14 -2.38 -0.02 -0.20 16 29 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 30 H 0.09 0.22 6.23 -2.39 -0.01 0.20 16 31 H 0.20 -1.82 6.21 -2.91 -0.02 -1.83 16 32 H 0.10 0.09 7.96 -2.39 -0.02 0.07 16 33 H 0.39 -3.13 8.70 -74.06 -0.64 -3.78 16 34 H -0.29 -0.37 7.11 99.48 0.71 0.34 16 35 H -0.30 -1.49 7.11 99.48 0.71 -0.78 16 36 H 0.16 -0.31 7.45 -2.91 -0.02 -0.33 16 37 H 0.41 -2.23 7.63 -92.70 -0.71 -2.94 16 38 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 39 H 0.10 -0.93 8.08 -2.38 -0.02 -0.95 16 40 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.07 -0.07 7.84 -2.38 -0.02 -0.09 16 42 H 0.42 -1.70 8.58 -92.71 -0.80 -2.50 16 43 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 44 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.06 0.58 5.88 -2.38 -0.01 0.56 16 46 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.10 -0.49 8.14 -2.38 -0.02 -0.51 16 48 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 49 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 50 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 51 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 52 H 0.09 -0.30 7.90 -2.39 -0.02 -0.32 16 53 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 Total: 0.00 -25.14 426.64 -1.26 -26.41 By element: Atomic # 1 Polarization: -14.38 SS G_CDS: -1.16 Total: -15.54 kcal Atomic # 6 Polarization: 7.77 SS G_CDS: 7.44 Total: 15.21 kcal Atomic # 7 Polarization: 0.18 SS G_CDS: -7.35 Total: -7.17 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -2.30 Total: -18.38 kcal Atomic # 14 Polarization: -2.63 SS G_CDS: 2.10 Total: -0.53 kcal Total: -25.14 -1.26 -26.41 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_10803934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.558 kcal (2) G-P(sol) polarization free energy of solvation -25.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds