Wall clock time and date at job start Sat Mar 6 2021 19:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.37653 * 125.67694 * 2 1 4 4 C 1.46678 * 126.23473 * 359.97438 * 3 2 1 5 5 O 1.21701 * 119.99309 * 4.65428 * 4 3 2 6 6 N 1.34770 * 120.00380 * 184.64800 * 4 3 2 7 7 C 1.46502 * 120.00301 * 174.89911 * 6 4 3 8 8 H 1.09004 * 112.90523 * 336.25284 * 7 6 4 9 9 C 1.53778 * 113.61050 * 107.50580 * 7 6 4 10 10 C 1.53785 * 87.07844 * 139.98520 * 9 7 6 11 11 H 1.08995 * 113.61496 * 89.11622 * 10 9 7 12 12 C 1.53005 * 113.60947 * 220.01767 * 10 9 7 13 13 N 1.46502 * 109.46926 * 272.49254 * 12 10 9 14 14 C 1.34771 * 119.99794 * 180.02562 * 13 12 10 15 15 O 1.21510 * 120.00369 * 0.02562 * 14 13 12 16 16 O 1.34635 * 120.00337 * 180.02562 * 14 13 12 17 17 C 1.45204 * 117.00568 * 180.02562 * 16 14 13 18 18 C 1.53000 * 109.46959 * 59.99476 * 17 16 14 19 19 C 1.52995 * 109.47221 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.46611 * 299.99932 * 17 16 14 21 21 C 1.53778 * 113.61549 * 205.00541 * 7 6 4 22 22 C 1.37875 * 107.53240 * 179.74291 * 3 2 1 23 23 C 1.39835 * 107.08680 * 0.22365 * 22 3 2 24 24 C 1.35459 * 107.86491 * 0.02562 * 23 22 3 25 25 C 1.50692 * 125.56429 * 180.02562 * 24 23 22 26 26 O 1.42900 * 109.47601 * 149.97366 * 25 24 23 27 27 Si 1.86302 * 109.47441 * 29.96840 * 25 24 23 28 28 H 1.09009 * 109.47343 * 95.78401 * 1 2 3 29 29 H 1.08997 * 109.47049 * 215.77875 * 1 2 3 30 30 H 1.09000 * 109.47633 * 335.77924 * 1 2 3 31 31 H 0.96999 * 119.99810 * 354.90838 * 6 4 3 32 32 H 1.08994 * 113.61757 * 25.43163 * 9 7 6 33 33 H 1.09001 * 113.61518 * 254.52739 * 9 7 6 34 34 H 1.08998 * 109.47431 * 32.49746 * 12 10 9 35 35 H 1.09004 * 109.46615 * 152.49975 * 12 10 9 36 36 H 0.97002 * 120.00145 * 0.02562 * 13 12 10 37 37 H 1.09004 * 109.47184 * 60.00388 * 18 17 16 38 38 H 1.09002 * 109.46910 * 180.02562 * 18 17 16 39 39 H 1.09000 * 109.47610 * 300.00290 * 18 17 16 40 40 H 1.08999 * 109.46967 * 60.00010 * 19 17 16 41 41 H 1.09002 * 109.47140 * 179.97438 * 19 17 16 42 42 H 1.08999 * 109.47292 * 300.00220 * 19 17 16 43 43 H 1.09000 * 109.47583 * 59.99686 * 20 17 16 44 44 H 1.09002 * 109.46742 * 179.97438 * 20 17 16 45 45 H 1.09002 * 109.47119 * 299.99288 * 20 17 16 46 46 H 1.08998 * 113.61757 * 105.47474 * 21 7 6 47 47 H 1.09004 * 113.69085 * 334.57450 * 21 7 6 48 48 H 1.08003 * 126.45427 * 180.19519 * 22 3 2 49 49 H 1.07992 * 126.06878 * 180.02562 * 23 22 3 50 50 H 1.09006 * 109.47089 * 269.97365 * 25 24 23 51 51 H 0.96703 * 113.99430 * 300.00348 * 26 25 24 52 52 H 1.48495 * 109.99927 * 180.02562 * 27 25 24 53 53 H 1.48498 * 110.00036 * 301.32439 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2678 1.1182 0.0000 4 6 1.8124 2.5125 -0.0005 5 8 0.6248 2.7646 0.0845 6 7 2.7089 3.5142 -0.0950 7 6 2.2491 4.9006 -0.2082 8 1 1.2392 4.9812 -0.6104 9 6 2.4721 5.7296 1.0677 10 6 2.8744 6.8936 0.1467 11 1 2.0354 7.5190 -0.1584 12 6 4.0632 7.7041 0.6671 13 7 3.5803 8.7618 1.5583 14 6 4.4561 9.6065 2.1379 15 8 5.6461 9.4912 1.9209 16 8 4.0125 10.5783 2.9574 17 6 5.0121 11.4517 3.5460 18 6 5.7799 12.1699 2.4344 19 6 4.3237 12.4852 4.4397 20 6 5.9859 10.6204 4.3835 21 6 3.2620 5.8314 -0.8956 22 6 3.5780 0.6888 0.0059 23 6 3.5522 -0.7093 0.0042 24 6 2.2554 -1.1010 -0.0031 25 6 1.7709 -2.5279 -0.0066 26 8 0.5096 -2.6044 0.6606 27 14 3.0072 -3.6058 0.8768 28 1 -0.3634 -0.1036 -1.0225 29 1 -0.3633 -0.8337 0.6008 30 1 -0.3634 0.9372 0.4216 31 1 3.6587 3.3173 -0.0883 32 1 3.2885 5.3626 1.6897 33 1 1.5587 5.9155 1.6328 34 1 4.7387 7.0473 1.2151 35 1 4.5937 8.1514 -0.1735 36 1 2.6303 8.8542 1.7313 37 1 5.0860 12.7621 1.8377 38 1 6.5305 12.8252 2.8763 39 1 6.2703 11.4339 1.7974 40 1 3.7764 11.9738 5.2315 41 1 5.0741 13.1406 4.8819 42 1 3.6300 13.0773 3.8427 43 1 6.4763 9.8843 3.7465 44 1 6.7366 11.2760 4.8250 45 1 5.4390 10.1087 5.1754 46 1 2.9863 6.0996 -1.9155 47 1 4.2948 5.4934 -0.8113 48 1 4.4583 1.3145 0.0104 49 1 4.4132 -1.3611 0.0081 50 1 1.6592 -2.8711 -1.0352 51 1 0.5341 -2.3136 1.5826 52 1 2.5412 -5.0158 0.8796 53 1 4.3313 -3.5103 0.2114 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_10803936.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:52:04 Heat of formation + Delta-G solvation = -72.720663 kcal Electronic energy + Delta-G solvation = -32815.824396 eV Core-core repulsion = 28270.111879 eV Total energy + Delta-G solvation = -4545.712517 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -42.62023 -41.82739 -40.96795 -39.46496 -38.26331 -37.79206 -35.96617 -35.08485 -34.45766 -33.60754 -31.39986 -29.06585 -28.36974 -28.30563 -27.52557 -26.84602 -26.69090 -24.29787 -23.22901 -22.54344 -21.43707 -21.39962 -20.81701 -20.21681 -19.11797 -18.80050 -18.05843 -17.77688 -17.36422 -17.29220 -16.90413 -16.48586 -16.28568 -16.01872 -15.88527 -15.59611 -15.50630 -15.31224 -15.23656 -14.89027 -14.64751 -14.54185 -14.43846 -14.38611 -13.72645 -13.47099 -13.42426 -13.34156 -13.20902 -13.18011 -13.02806 -12.96298 -12.90387 -12.86859 -12.50124 -12.38079 -12.19271 -12.17065 -12.02425 -11.72118 -11.44814 -11.38880 -11.14385 -11.09193 -10.65262 -10.21880 -10.11076 -9.76892 -9.11784 -4.91348 0.34830 1.17197 1.18696 1.49682 1.72982 1.75827 1.76214 2.03508 2.30105 2.38130 3.12697 3.27541 3.44082 3.54992 3.59130 3.69770 3.74243 3.78099 3.79362 3.83860 3.94239 3.99342 4.20560 4.31418 4.32585 4.39646 4.41916 4.51853 4.54510 4.60913 4.63215 4.71678 4.76038 4.76093 4.77429 4.82612 4.83873 4.87213 4.87784 5.00171 5.03451 5.07357 5.09304 5.12863 5.20897 5.26734 5.29276 5.37457 5.54508 5.59652 5.72395 5.96896 6.11890 6.39212 6.47961 6.55508 7.12643 7.33852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.401 5.401 3 C -0.082 4.082 4 C 0.587 3.413 5 O -0.586 6.586 6 N -0.695 5.695 7 C 0.119 3.881 8 H 0.100 0.900 9 C -0.143 4.143 10 C -0.109 4.109 11 H 0.114 0.886 12 C 0.152 3.848 13 N -0.700 5.700 14 C 0.641 3.359 15 O -0.595 6.595 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.122 4.122 22 C -0.125 4.125 23 C -0.214 4.214 24 C 0.013 3.987 25 C -0.057 4.057 26 O -0.553 6.553 27 Si 0.810 3.190 28 H 0.064 0.936 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.417 0.583 32 H 0.092 0.908 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.416 0.584 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.173 0.827 49 H 0.161 0.839 50 H 0.113 0.887 51 H 0.396 0.604 52 H -0.294 1.294 53 H -0.274 1.274 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.840 0.616 2.437 3.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.074 5.074 3 C -0.195 4.195 4 C 0.376 3.624 5 O -0.468 6.468 6 N -0.345 5.345 7 C 0.015 3.985 8 H 0.118 0.882 9 C -0.182 4.182 10 C -0.128 4.128 11 H 0.132 0.868 12 C 0.030 3.970 13 N -0.360 5.360 14 C 0.394 3.606 15 O -0.486 6.486 16 O -0.286 6.286 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.161 4.161 22 C -0.151 4.151 23 C -0.237 4.237 24 C -0.105 4.105 25 C -0.166 4.166 26 O -0.361 6.361 27 Si 0.713 3.287 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.107 0.893 31 H 0.255 0.745 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.125 0.875 48 H 0.191 0.809 49 H 0.179 0.821 50 H 0.130 0.870 51 H 0.246 0.754 52 H -0.221 1.221 53 H -0.200 1.200 Dipole moment (debyes) X Y Z Total from point charges 1.549 -0.032 1.773 2.355 hybrid contribution -0.419 0.227 -0.723 0.866 sum 1.130 0.195 1.050 1.554 Atomic orbital electron populations 1.22579 0.75662 1.06298 1.04005 1.43914 1.07179 1.04387 1.51933 1.20244 0.91389 0.87461 1.20383 1.17230 0.85409 0.84317 0.75396 1.90761 1.17946 1.85354 1.52765 1.45542 1.10003 1.05522 1.73462 1.22547 0.99607 0.78431 0.97957 0.88214 1.23574 1.02521 0.95325 0.96798 1.22534 0.98055 0.94866 0.97333 0.86821 1.21383 0.96281 0.87204 0.92172 1.44765 1.10172 1.31929 1.49166 1.18373 0.84540 0.79490 0.78149 1.90904 1.16070 1.75103 1.66549 1.86310 1.41970 1.41839 1.58456 1.22348 0.87013 0.88530 0.93061 1.22473 1.01131 1.01167 0.98924 1.21891 1.01894 0.97012 0.98710 1.22470 0.99792 1.01412 1.00009 1.23317 1.00197 0.93485 0.99099 1.21655 0.94504 0.95506 1.03441 1.20909 0.95320 0.95817 1.11679 1.21397 0.91194 0.89499 1.08454 1.25208 0.94460 0.94187 1.02750 1.86454 1.30102 1.88869 1.30703 0.92955 0.73553 0.74087 0.88135 0.91783 0.86284 0.89264 0.74549 0.88959 0.91240 0.91192 0.91153 0.74733 0.91976 0.89484 0.91729 0.91236 0.88318 0.91216 0.91709 0.89482 0.91990 0.89318 0.87491 0.80949 0.82126 0.87007 0.75378 1.22140 1.19969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.19 10.30 127.77 1.32 1.51 16 2 N -0.40 -1.71 3.16 -519.71 -1.64 -3.35 16 3 C -0.08 -0.34 6.89 40.35 0.28 -0.06 16 4 C 0.59 3.23 7.77 86.45 0.67 3.90 16 5 O -0.59 -7.30 14.18 -4.35 -0.06 -7.36 16 6 N -0.69 1.33 5.34 -444.00 -2.37 -1.04 16 7 C 0.12 -0.38 4.21 45.52 0.19 -0.19 16 8 H 0.10 0.09 7.53 -2.39 -0.02 0.08 16 9 C -0.14 0.70 7.43 31.12 0.23 0.94 16 10 C -0.11 0.81 3.76 -10.26 -0.04 0.77 16 11 H 0.11 -0.99 8.14 -2.39 -0.02 -1.01 16 12 C 0.15 -0.55 5.51 86.38 0.48 -0.07 16 13 N -0.70 0.45 5.56 -590.85 -3.29 -2.83 16 14 C 0.64 3.97 8.06 129.79 1.05 5.01 16 15 O -0.60 -6.77 11.88 19.81 0.24 -6.54 16 16 O -0.37 -2.00 9.94 -55.44 -0.55 -2.56 16 17 C 0.13 0.36 1.13 -10.80 -0.01 0.35 16 18 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 19 C -0.14 0.28 8.85 71.98 0.64 0.92 16 20 C -0.18 -0.55 8.37 71.98 0.60 0.06 16 21 C -0.12 0.98 7.39 31.12 0.23 1.21 16 22 C -0.12 0.06 10.36 22.57 0.23 0.30 16 23 C -0.21 0.05 9.37 22.01 0.21 0.25 16 24 C 0.01 0.02 6.15 41.34 0.25 0.27 16 25 C -0.06 0.09 2.99 71.23 0.21 0.31 16 26 O -0.55 1.10 10.11 -148.98 -1.51 -0.41 16 27 Si 0.81 -3.55 31.29 68.60 2.15 -1.40 16 28 H 0.06 0.28 8.14 -2.38 -0.02 0.27 16 29 H 0.12 -0.09 5.24 -2.39 -0.01 -0.10 16 30 H 0.09 0.61 5.92 -2.39 -0.01 0.59 16 31 H 0.42 -3.07 7.63 -92.71 -0.71 -3.78 16 32 H 0.09 -0.46 7.90 -2.39 -0.02 -0.48 16 33 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 34 H 0.07 -0.17 7.84 -2.39 -0.02 -0.18 16 35 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 36 H 0.42 -1.91 8.58 -92.71 -0.80 -2.71 16 37 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.10 -0.53 8.14 -2.39 -0.02 -0.54 16 42 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 44 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.11 -1.10 8.08 -2.39 -0.02 -1.12 16 48 H 0.17 -1.23 7.45 -2.91 -0.02 -1.26 16 49 H 0.16 -0.55 6.62 -2.91 -0.02 -0.57 16 50 H 0.11 -0.05 7.96 -2.38 -0.02 -0.07 16 51 H 0.40 -3.60 8.29 -74.05 -0.61 -4.22 16 52 H -0.29 -0.74 7.11 99.48 0.71 -0.04 16 53 H -0.27 0.20 6.76 99.48 0.67 0.87 16 Total: 0.00 -23.49 420.74 -1.06 -24.55 By element: Atomic # 1 Polarization: -13.41 SS G_CDS: -1.16 Total: -14.57 kcal Atomic # 6 Polarization: 8.37 SS G_CDS: 7.14 Total: 15.51 kcal Atomic # 7 Polarization: 0.08 SS G_CDS: -7.30 Total: -7.22 kcal Atomic # 8 Polarization: -14.98 SS G_CDS: -1.88 Total: -16.86 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.15 Total: -1.40 kcal Total: -23.49 -1.06 -24.55 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_10803936.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.174 kcal (2) G-P(sol) polarization free energy of solvation -23.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds