Wall clock time and date at job start Sat Mar 6 2021 19:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47339 * 2 1 4 4 C 1.52999 * 109.46702 * 239.99727 * 2 1 3 5 5 O 1.45200 * 109.46577 * 120.00184 * 2 1 3 6 6 C 1.34630 * 117.00379 * 60.00084 * 5 2 1 7 7 O 1.21514 * 119.99995 * 359.97438 * 6 5 2 8 8 N 1.34777 * 120.00094 * 179.97438 * 6 5 2 9 9 C 1.46508 * 120.00015 * 179.97438 * 8 6 5 10 10 C 1.53000 * 109.46810 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.85038 * 43.80987 * 10 9 8 12 12 C 1.53787 * 113.60890 * 175.00176 * 10 9 8 13 13 C 1.53784 * 87.07923 * 139.98364 * 12 10 9 14 14 H 1.09002 * 113.61478 * 89.11632 * 13 12 10 15 15 N 1.46497 * 113.61569 * 220.01663 * 13 12 10 16 16 C 1.34769 * 120.00274 * 204.99925 * 15 13 12 17 17 O 1.21719 * 120.00231 * 0.02562 * 16 15 13 18 18 C 1.46573 * 120.00069 * 180.02562 * 16 15 13 19 19 C 1.40855 * 126.57960 * 179.71423 * 18 16 15 20 20 C 1.40094 * 132.86641 * 359.97438 * 19 18 16 21 21 C 1.36451 * 119.25529 * 179.97438 * 20 19 18 22 22 C 1.50693 * 120.29455 * 180.02562 * 21 20 19 23 23 O 1.42903 * 109.47243 * 120.00152 * 22 21 20 24 24 Si 1.86303 * 109.47332 * 240.00280 * 22 21 20 25 25 C 1.40156 * 119.40739 * 359.97438 * 21 20 19 26 26 C 1.35194 * 120.31694 * 359.61957 * 25 21 20 27 27 N 1.36235 * 120.70886 * 0.59080 * 26 25 21 28 28 N 1.40018 * 132.01416 * 179.25141 * 27 26 25 29 29 C 1.30745 * 109.60172 * 180.02562 * 28 27 26 30 30 C 1.53779 * 87.08045 * 334.56667 * 13 12 10 31 31 H 1.09006 * 109.47295 * 300.00043 * 1 2 3 32 32 H 1.09004 * 109.47249 * 59.99720 * 1 2 3 33 33 H 1.08998 * 109.47532 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47048 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.47178 * 300.00323 * 3 2 1 36 36 H 1.09006 * 109.46962 * 59.99753 * 3 2 1 37 37 H 1.08997 * 109.47598 * 299.99925 * 4 2 1 38 38 H 1.08997 * 109.47033 * 60.00644 * 4 2 1 39 39 H 1.08997 * 109.46569 * 179.97438 * 4 2 1 40 40 H 0.96999 * 120.00101 * 0.02562 * 8 6 5 41 41 H 1.09003 * 109.46643 * 60.00190 * 9 8 6 42 42 H 1.08993 * 109.47454 * 300.00286 * 9 8 6 43 43 H 1.09004 * 113.61202 * 254.53117 * 12 10 9 44 44 H 1.08994 * 113.61447 * 25.43549 * 12 10 9 45 45 H 0.97009 * 119.99534 * 24.99936 * 15 13 12 46 46 H 1.08001 * 120.37254 * 0.02562 * 20 19 18 47 47 H 1.09004 * 109.47518 * 0.02562 * 22 21 20 48 48 H 0.96699 * 113.99469 * 59.99487 * 23 22 21 49 49 H 1.48495 * 109.99922 * 58.68008 * 24 22 21 50 50 H 1.48497 * 110.00179 * 180.02562 * 24 22 21 51 51 H 1.08001 * 119.83894 * 179.97438 * 25 21 20 52 52 H 1.08007 * 119.64316 * 179.90261 * 26 25 21 53 53 H 1.07997 * 125.62250 * 180.02562 * 29 28 27 54 54 H 1.09006 * 113.61307 * 270.88660 * 30 13 12 55 55 H 1.08999 * 113.69146 * 139.99146 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6521 -1.9723 1.3383 7 8 0.9508 -2.5094 0.5040 8 7 2.0679 -2.6657 2.4167 9 6 1.6737 -4.0669 2.5832 10 6 2.2749 -4.6152 3.8789 11 1 2.1814 -3.9225 4.7152 12 6 1.8212 -6.0466 4.2109 13 6 3.2665 -6.3159 4.6620 14 1 3.4456 -6.0884 5.7129 15 7 3.7670 -7.6361 4.2711 16 6 4.7568 -8.2177 4.9770 17 8 5.2347 -7.6464 5.9397 18 6 5.2578 -9.5383 4.5855 19 6 6.2846 -10.2675 5.2165 20 6 7.0980 -10.0030 6.3261 21 6 8.0272 -10.9267 6.7070 22 6 8.9141 -10.6666 7.8973 23 8 8.7065 -11.6853 8.8777 24 14 10.6972 -10.6782 7.3576 25 6 8.1487 -12.1200 5.9820 26 6 7.3474 -12.3576 4.9194 27 7 6.4195 -11.4397 4.5288 28 7 5.4941 -11.4314 3.4781 29 6 4.8088 -10.3183 3.5059 30 6 3.6914 -5.1884 3.7066 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.6766 -1.7490 -1.2492 38 1 1.6766 -0.2075 -2.1392 39 1 3.1299 -0.7209 -1.2494 40 1 2.6274 -2.2368 3.0829 41 1 2.0395 -4.6500 1.7380 42 1 0.5869 -4.1357 2.6288 43 1 1.0942 -6.0972 5.0215 44 1 1.5221 -6.6238 3.3361 45 1 3.3858 -8.0916 3.5041 46 1 6.9902 -9.0787 6.8742 47 1 8.6704 -9.6947 8.3265 48 1 8.9039 -12.5786 8.5644 49 1 10.9190 -9.6444 6.3149 50 1 11.5821 -10.4235 8.5225 51 1 8.8822 -12.8558 6.2772 52 1 7.4515 -13.2801 4.3675 53 1 4.0268 -10.0436 2.8136 54 1 3.9036 -5.5310 2.6937 55 1 4.4744 -4.5454 4.1086 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_11618758.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:52:08 Heat of formation + Delta-G solvation = -23.456048 kcal Electronic energy + Delta-G solvation = -37010.293574 eV Core-core repulsion = 32016.612999 eV Total energy + Delta-G solvation = -4993.680576 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -43.31379 -41.84835 -41.04898 -39.62982 -39.20567 -38.26393 -37.21029 -35.93847 -35.00426 -34.35378 -33.99950 -32.09562 -30.46695 -28.92281 -28.38721 -28.32237 -27.28817 -26.69601 -25.25030 -24.41005 -23.48942 -23.07113 -22.49250 -21.44738 -21.28578 -20.47406 -19.20651 -18.97929 -18.49049 -17.93487 -17.73225 -17.48426 -17.33533 -17.14177 -17.00047 -16.51385 -16.38954 -15.99241 -15.83588 -15.75877 -15.58912 -15.40850 -15.38295 -14.99258 -14.67310 -14.50301 -14.44258 -14.23745 -14.01780 -13.50833 -13.46586 -13.42283 -13.35042 -13.17143 -13.13731 -13.00101 -12.92261 -12.88611 -12.52249 -12.40716 -12.39853 -12.27224 -12.16502 -11.98273 -11.72015 -11.57381 -11.44476 -11.40130 -11.13961 -10.95824 -10.79417 -10.26746 -10.22617 -10.04206 -8.80927 -5.08004 -0.57733 -0.11320 0.99532 1.04856 1.16612 1.19730 1.67183 1.74087 1.95308 2.07047 2.25689 2.46070 3.07824 3.11510 3.23183 3.44732 3.46308 3.59341 3.60075 3.72502 3.73847 3.76470 3.77547 3.83549 3.87230 3.92493 3.96103 4.15343 4.22402 4.35501 4.38116 4.44041 4.50670 4.59188 4.61963 4.61993 4.71470 4.74332 4.75871 4.77785 4.82362 4.83710 4.85424 4.88780 4.98950 5.06932 5.08393 5.10239 5.16027 5.20579 5.25029 5.27252 5.30450 5.37107 5.57567 5.61896 5.67282 6.28136 6.37338 6.59753 6.76177 7.27935 7.31948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.701 5.701 9 C 0.152 3.848 10 C -0.109 4.109 11 H 0.113 0.887 12 C -0.122 4.122 13 C 0.119 3.881 14 H 0.097 0.903 15 N -0.704 5.704 16 C 0.597 3.403 17 O -0.596 6.596 18 C -0.349 4.349 19 C 0.150 3.850 20 C -0.135 4.135 21 C -0.054 4.054 22 C -0.077 4.077 23 O -0.546 6.546 24 Si 0.815 3.185 25 C -0.146 4.146 26 C 0.114 3.886 27 N -0.274 5.274 28 N -0.338 5.338 29 C 0.131 3.869 30 C -0.145 4.145 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.416 0.584 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.413 0.587 46 H 0.137 0.863 47 H 0.105 0.895 48 H 0.401 0.599 49 H -0.303 1.303 50 H -0.289 1.289 51 H 0.223 0.777 52 H 0.214 0.786 53 H 0.233 0.767 54 H 0.091 0.909 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.576 -4.724 -1.402 5.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.361 5.361 9 C 0.030 3.970 10 C -0.128 4.128 11 H 0.131 0.869 12 C -0.160 4.160 13 C 0.014 3.986 14 H 0.115 0.885 15 N -0.355 5.355 16 C 0.388 3.612 17 O -0.479 6.479 18 C -0.363 4.363 19 C 0.029 3.971 20 C -0.155 4.155 21 C -0.060 4.060 22 C -0.185 4.185 23 O -0.355 6.355 24 Si 0.719 3.281 25 C -0.166 4.166 26 C -0.011 4.011 27 N -0.037 5.037 28 N -0.159 5.159 29 C -0.050 4.050 30 C -0.184 4.184 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.252 0.748 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.125 0.875 45 H 0.251 0.749 46 H 0.155 0.845 47 H 0.123 0.877 48 H 0.252 0.748 49 H -0.231 1.231 50 H -0.216 1.216 51 H 0.239 0.761 52 H 0.230 0.770 53 H 0.249 0.751 54 H 0.109 0.891 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.160 -4.708 -1.619 5.897 hybrid contribution -0.790 1.518 0.474 1.776 sum 2.371 -3.190 -1.145 4.136 Atomic orbital electron populations 1.22473 0.93972 1.03729 1.03515 1.22351 0.94520 0.92558 0.81533 1.21894 1.02404 0.90956 1.04255 1.22470 1.01568 1.02286 0.97367 1.86309 1.71593 1.23425 1.47275 1.18369 0.78823 0.80772 0.82578 1.90904 1.42314 1.71027 1.44350 1.44778 1.55174 1.12973 1.23142 1.21383 0.99998 0.78093 0.97523 1.22531 0.95922 0.97151 0.97165 0.86917 1.23308 0.95152 0.94575 1.02973 1.22476 0.95217 0.81468 0.99477 0.88494 1.45562 1.37199 1.19883 1.32811 1.17097 0.79027 0.83587 0.81508 1.90745 1.60569 1.66299 1.30274 1.19756 1.09232 1.00736 1.06595 1.19488 0.96314 0.87577 0.93742 1.20640 0.96224 1.02341 0.96275 1.20773 0.94361 0.94175 0.96657 1.25326 1.09526 0.94678 0.88928 1.86587 1.91533 1.19718 1.37680 0.93859 0.70204 0.87387 0.76666 1.21365 1.02070 0.98616 0.94570 1.22481 0.86814 0.94523 0.97276 1.46386 1.24716 1.12806 1.19815 1.77556 1.07144 1.23753 1.07406 1.24574 0.96499 0.88903 0.95001 1.23580 0.96883 0.97333 1.00574 0.91957 0.89447 0.91724 0.91276 0.88270 0.91204 0.91724 0.89435 0.92053 0.74773 0.91237 0.91063 0.89377 0.87451 0.74927 0.84499 0.87700 0.74791 1.23116 1.21611 0.76087 0.76954 0.75059 0.89063 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 2 C 0.13 0.46 1.13 -10.79 -0.01 0.44 16 3 C -0.14 0.19 8.85 71.98 0.64 0.82 16 4 C -0.18 -0.68 8.37 71.98 0.60 -0.08 16 5 O -0.37 -2.34 9.94 -55.39 -0.55 -2.89 16 6 C 0.64 4.58 8.06 129.79 1.05 5.63 16 7 O -0.59 -7.27 11.88 19.80 0.24 -7.04 16 8 N -0.70 -0.37 5.56 -590.85 -3.29 -3.65 16 9 C 0.15 -0.36 5.51 86.38 0.48 0.11 16 10 C -0.11 0.63 3.75 -10.27 -0.04 0.59 16 11 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 12 C -0.12 0.79 7.39 31.12 0.23 1.02 16 13 C 0.12 -0.12 4.24 45.52 0.19 0.07 16 14 H 0.10 0.36 7.46 -2.39 -0.02 0.34 16 15 N -0.70 -0.09 5.34 -444.09 -2.37 -2.46 16 16 C 0.60 5.06 7.78 86.42 0.67 5.73 16 17 O -0.60 -9.78 15.31 -4.41 -0.07 -9.85 16 18 C -0.35 -2.43 6.17 -19.90 -0.12 -2.55 16 19 C 0.15 1.15 6.76 39.50 0.27 1.42 16 20 C -0.13 -0.86 9.35 22.30 0.21 -0.65 16 21 C -0.05 0.08 4.53 -19.82 -0.09 -0.01 16 22 C -0.08 0.20 2.84 71.23 0.20 0.41 16 23 O -0.55 1.89 12.88 -148.98 -1.92 -0.03 16 24 Si 0.82 -4.21 31.96 68.60 2.19 -2.02 16 25 C -0.15 1.31 8.38 22.03 0.18 1.49 16 26 C 0.11 -0.60 11.17 83.31 0.93 0.33 16 27 N -0.27 -1.01 3.86 -187.27 -0.72 -1.73 16 28 N -0.34 -1.65 12.57 -56.62 -0.71 -2.36 16 29 C 0.13 0.22 11.44 85.42 0.98 1.20 16 30 C -0.14 0.42 7.43 31.12 0.23 0.65 16 31 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.09 0.01 8.14 -2.38 -0.02 -0.01 16 33 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 34 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 35 H 0.10 -0.47 8.14 -2.38 -0.02 -0.49 16 36 H 0.07 -0.11 8.14 -2.38 -0.02 -0.13 16 37 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 38 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.42 -1.37 8.58 -92.71 -0.80 -2.17 16 41 H 0.07 -0.08 7.84 -2.39 -0.02 -0.10 16 42 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 43 H 0.09 -0.60 8.14 -2.39 -0.02 -0.62 16 44 H 0.11 -0.98 8.08 -2.39 -0.02 -1.00 16 45 H 0.41 -2.63 7.65 -92.70 -0.71 -3.34 16 46 H 0.14 1.39 7.01 -2.91 -0.02 1.37 16 47 H 0.11 0.09 7.71 -2.39 -0.02 0.07 16 48 H 0.40 -5.85 8.08 -74.06 -0.60 -6.44 16 49 H -0.30 -0.91 7.11 99.48 0.71 -0.21 16 50 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 51 H 0.22 -4.62 7.31 -2.91 -0.02 -4.64 16 52 H 0.21 -2.72 8.06 -2.91 -0.02 -2.75 16 53 H 0.23 -1.86 7.46 -2.91 -0.02 -1.88 16 54 H 0.09 -0.28 7.90 -2.38 -0.02 -0.30 16 55 H 0.07 -0.04 8.14 -2.39 -0.02 -0.06 16 Total: 0.00 -36.14 449.50 -1.11 -37.25 By element: Atomic # 1 Polarization: -20.67 SS G_CDS: -1.11 Total: -21.78 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 7.20 Total: 16.56 kcal Atomic # 7 Polarization: -3.12 SS G_CDS: -7.09 Total: -10.21 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -2.30 Total: -19.80 kcal Atomic # 14 Polarization: -4.21 SS G_CDS: 2.19 Total: -2.02 kcal Total: -36.14 -1.11 -37.25 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_11618758.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.794 kcal (2) G-P(sol) polarization free energy of solvation -36.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds