Wall clock time and date at job start Sat Mar 6 2021 19:52:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 O 1.45206 * 109.47226 * 239.99648 * 2 1 3 6 6 C 1.34644 * 116.99182 * 60.00595 * 5 2 1 7 7 O 1.21507 * 120.00513 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99419 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99707 * 179.97438 * 8 6 5 10 10 C 1.53003 * 109.47221 * 179.97438 * 9 8 6 11 11 H 1.09000 * 112.84563 * 316.19353 * 10 9 8 12 12 C 1.53784 * 113.61408 * 87.49817 * 10 9 8 13 13 C 1.53785 * 87.07706 * 139.98450 * 12 10 9 14 14 H 1.08997 * 113.69094 * 89.13122 * 13 12 10 15 15 N 1.46503 * 113.60964 * 220.01652 * 13 12 10 16 16 C 1.34780 * 120.00026 * 252.49328 * 15 13 12 17 17 O 1.21567 * 120.00064 * 0.02562 * 16 15 13 18 18 C 1.47688 * 119.99951 * 180.02562 * 16 15 13 19 19 C 1.39826 * 120.16577 * 180.02562 * 18 16 15 20 20 F 1.35096 * 120.10934 * 359.97438 * 19 18 16 21 21 C 1.38326 * 119.78013 * 180.02562 * 19 18 16 22 22 C 1.38209 * 120.11521 * 0.02562 * 21 19 18 23 23 C 1.38451 * 120.34039 * 359.97052 * 22 21 19 24 24 C 1.50708 * 119.89184 * 180.02562 * 23 22 21 25 25 O 1.42897 * 109.46891 * 120.00324 * 24 23 22 26 26 Si 1.86293 * 109.46735 * 0.02562 * 24 23 22 27 27 C 1.37866 * 120.21965 * 359.77214 * 23 22 21 28 28 C 1.53774 * 87.08352 * 334.56692 * 13 12 10 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 0.97000 * 120.00566 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.47330 * 299.99208 * 9 8 6 40 40 H 1.09000 * 109.47577 * 59.99610 * 9 8 6 41 41 H 1.08999 * 113.61299 * 254.52530 * 12 10 9 42 42 H 1.08987 * 113.61627 * 25.43432 * 12 10 9 43 43 H 0.96993 * 120.00049 * 72.50422 * 15 13 12 44 44 H 1.07994 * 119.94326 * 179.97438 * 21 19 18 45 45 H 1.07999 * 119.82739 * 179.97438 * 22 21 19 46 46 H 1.09003 * 109.46974 * 240.00414 * 24 23 22 47 47 H 0.96697 * 114.00246 * 299.99825 * 25 24 23 48 48 H 1.48501 * 109.99811 * 180.02562 * 26 24 23 49 49 H 1.48498 * 110.00560 * 301.31663 * 26 24 23 50 50 H 1.07995 * 120.06294 * 180.25443 * 27 23 22 51 51 H 1.09002 * 113.61626 * 270.88586 * 28 13 12 52 52 H 1.09003 * 113.61674 * 139.98330 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 8 2.0140 -0.6846 -1.1856 6 6 1.6523 -0.1728 -2.3772 7 8 0.9510 0.8183 -2.4253 8 7 2.0672 -0.7606 -3.5169 9 6 1.6732 -0.2041 -4.8135 10 6 2.2733 -1.0527 -5.9363 11 1 3.3143 -1.3200 -5.7546 12 6 1.3919 -2.2443 -6.3463 13 6 1.7817 -1.9311 -7.8006 14 1 2.6877 -2.4394 -8.1304 15 7 0.6734 -2.0716 -8.7484 16 6 0.6471 -3.1118 -9.6051 17 8 1.5428 -3.9336 -9.5911 18 6 -0.4698 -3.2532 -10.5609 19 6 -0.5008 -4.3312 -11.4509 20 9 0.4916 -5.2477 -11.4401 21 6 -1.5505 -4.4555 -12.3431 22 6 -2.5651 -3.5171 -12.3553 23 6 -2.5394 -2.4478 -11.4762 24 6 -3.6513 -1.4307 -11.4978 25 8 -4.2941 -1.4006 -10.2220 26 14 -4.8924 -1.8955 -12.8071 27 6 -1.5026 -2.3132 -10.5775 28 6 2.0201 -0.4828 -7.3420 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 2.6268 -1.5520 -3.4786 39 1 0.5862 -0.2086 -4.8957 40 1 2.0396 0.8191 -4.8964 41 1 1.7645 -3.2054 -5.9919 42 1 0.3327 -2.0964 -6.1366 43 1 -0.0414 -1.4161 -8.7594 44 1 -1.5769 -5.2868 -13.0319 45 1 -3.3823 -3.6185 -13.0541 46 1 -3.2391 -0.4465 -11.7204 47 1 -4.6848 -2.2449 -9.9583 48 1 -5.9938 -0.8999 -12.8390 49 1 -4.2299 -1.9618 -14.1345 50 1 -1.4872 -1.4804 -9.8901 51 1 1.1325 0.1468 -7.4045 52 1 2.8997 -0.0217 -7.7912 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_12335834.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:52:21 Heat of formation + Delta-G solvation = -140.716680 kcal Electronic energy + Delta-G solvation = -34650.545115 eV Core-core repulsion = 29725.167483 eV Total energy + Delta-G solvation = -4925.377632 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.183 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -50.02316 -41.86501 -41.52427 -40.45462 -39.46930 -38.28419 -37.43409 -35.97971 -35.08092 -34.42378 -32.56999 -32.22016 -29.03097 -28.37906 -28.31346 -26.73914 -26.62751 -25.78407 -24.19887 -23.18719 -22.44875 -21.67508 -21.34885 -20.54222 -19.22213 -19.10932 -18.32541 -18.29559 -17.79334 -17.38767 -17.32534 -17.05322 -16.93721 -16.41775 -16.23518 -15.98552 -15.93253 -15.83602 -15.69103 -15.45569 -15.42950 -14.79300 -14.71953 -14.51368 -14.41824 -14.37936 -13.65942 -13.50951 -13.46567 -13.35974 -13.23032 -13.16864 -13.02305 -12.92228 -12.87806 -12.83594 -12.52175 -12.40137 -12.22743 -12.15413 -11.86453 -11.75053 -11.48324 -11.40171 -11.18065 -11.10958 -10.48166 -10.41230 -10.22699 -10.08590 -9.81144 -4.96643 -0.50834 -0.03890 1.16609 1.31389 1.58445 1.66637 1.74590 1.97371 2.02395 2.46679 3.04098 3.10885 3.35781 3.38944 3.47122 3.56049 3.58052 3.65975 3.72544 3.73353 3.78258 3.79259 3.93353 4.00430 4.10100 4.17605 4.37814 4.44648 4.50504 4.56616 4.60072 4.61618 4.69610 4.73101 4.75225 4.75832 4.79508 4.80445 4.83923 4.86319 4.87251 4.94202 4.96826 5.03880 5.07080 5.13192 5.17169 5.25812 5.26250 5.35560 5.51202 5.58247 5.59304 6.35747 6.37635 6.78858 7.03849 7.32416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.180 4.180 4 C -0.138 4.138 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.594 6.594 8 N -0.700 5.700 9 C 0.152 3.848 10 C -0.108 4.108 11 H 0.114 0.886 12 C -0.144 4.144 13 C 0.114 3.886 14 H 0.100 0.900 15 N -0.699 5.699 16 C 0.554 3.446 17 O -0.572 6.572 18 C -0.189 4.189 19 C 0.133 3.867 20 F -0.137 7.137 21 C -0.152 4.152 22 C -0.052 4.052 23 C -0.134 4.134 24 C -0.066 4.066 25 O -0.551 6.551 26 Si 0.770 3.230 27 C -0.025 4.025 28 C -0.122 4.122 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.415 0.585 44 H 0.167 0.833 45 H 0.167 0.833 46 H 0.119 0.881 47 H 0.397 0.603 48 H -0.303 1.303 49 H -0.280 1.280 50 H 0.158 0.842 51 H 0.107 0.893 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.087 0.208 -0.118 4.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.237 4.237 4 C -0.195 4.195 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.361 5.361 9 C 0.030 3.970 10 C -0.127 4.127 11 H 0.132 0.868 12 C -0.183 4.183 13 C 0.009 3.991 14 H 0.118 0.882 15 N -0.351 5.351 16 C 0.342 3.658 17 O -0.452 6.452 18 C -0.193 4.193 19 C 0.112 3.888 20 F -0.115 7.115 21 C -0.171 4.171 22 C -0.070 4.070 23 C -0.135 4.135 24 C -0.176 4.176 25 O -0.360 6.360 26 Si 0.676 3.324 27 C -0.043 4.043 28 C -0.161 4.161 29 H 0.083 0.917 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.117 0.883 38 H 0.253 0.747 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.253 0.747 44 H 0.184 0.816 45 H 0.184 0.816 46 H 0.137 0.863 47 H 0.247 0.753 48 H -0.231 1.231 49 H -0.207 1.207 50 H 0.175 0.825 51 H 0.125 0.875 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.952 0.948 -0.780 4.139 hybrid contribution 0.820 0.027 0.095 0.826 sum -3.133 0.975 -0.685 3.352 Atomic orbital electron populations 1.22470 0.94002 1.02897 1.04306 1.22352 0.94499 0.92501 0.81610 1.22469 1.01613 0.95303 1.04301 1.21894 1.02438 1.01230 0.93945 1.86316 1.71588 1.56648 1.14024 1.18371 0.78828 0.81529 0.81809 1.90904 1.42275 1.27953 1.87431 1.44763 1.55277 1.33036 1.02992 1.21374 0.99828 0.97280 0.78533 1.22529 1.00927 0.96039 0.93247 0.86801 1.23577 1.00958 0.98858 0.94859 1.22586 0.90305 0.98520 0.87672 0.88245 1.45784 1.26586 1.26749 1.35934 1.18356 0.85163 0.81601 0.80650 1.90835 1.39527 1.43274 1.71608 1.20088 0.99083 0.99120 1.01056 1.18219 0.86851 0.87051 0.96652 1.91557 1.60022 1.64522 1.95411 1.21391 0.93141 1.02782 0.99753 1.21384 0.97496 0.91393 0.96680 1.20480 0.97770 0.97760 0.97453 1.25105 0.96972 1.00313 0.95255 1.86493 1.74829 1.39965 1.34671 0.93812 0.76688 0.86987 0.74911 1.21181 0.89968 0.96404 0.96791 1.23313 1.04249 0.94872 0.93624 0.91721 0.89460 0.92001 0.89469 0.91981 0.91726 0.91243 0.91222 0.88293 0.74735 0.91206 0.91108 0.91235 0.88873 0.74676 0.81558 0.81602 0.86342 0.75251 1.23097 1.20714 0.82452 0.87508 0.89232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 2 C 0.13 0.40 1.13 -10.79 -0.01 0.39 16 3 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 4 C -0.14 0.24 8.85 71.98 0.64 0.88 16 5 O -0.37 -2.13 9.94 -55.53 -0.55 -2.68 16 6 C 0.64 4.19 8.06 129.79 1.05 5.24 16 7 O -0.59 -6.93 11.88 19.82 0.24 -6.69 16 8 N -0.70 0.13 5.56 -590.84 -3.29 -3.15 16 9 C 0.15 -0.47 5.51 86.38 0.48 0.00 16 10 C -0.11 0.73 3.75 -10.27 -0.04 0.69 16 11 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 12 C -0.14 0.59 7.43 31.12 0.23 0.82 16 13 C 0.11 -0.25 4.24 45.52 0.19 -0.06 16 14 H 0.10 0.25 7.46 -2.39 -0.02 0.23 16 15 N -0.70 0.96 5.31 -443.06 -2.35 -1.39 16 16 C 0.55 3.59 7.77 86.74 0.67 4.27 16 17 O -0.57 -9.11 14.94 -3.93 -0.06 -9.17 16 18 C -0.19 -0.52 5.88 -20.05 -0.12 -0.64 16 19 C 0.13 0.62 7.29 22.68 0.17 0.79 16 20 F -0.14 -1.61 15.55 44.97 0.70 -0.91 16 21 C -0.15 0.40 10.02 22.28 0.22 0.62 16 22 C -0.05 0.35 8.66 22.31 0.19 0.54 16 23 C -0.13 0.80 5.39 -19.90 -0.11 0.70 16 24 C -0.07 0.48 2.82 71.24 0.20 0.68 16 25 O -0.55 3.52 12.76 -148.98 -1.90 1.62 16 26 Si 0.77 -5.70 29.77 68.60 2.04 -3.65 16 27 C -0.02 0.10 9.09 22.52 0.20 0.30 16 28 C -0.12 0.90 7.39 31.12 0.23 1.13 16 29 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 32 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 33 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 34 H 0.06 0.55 5.88 -2.39 -0.01 0.53 16 35 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 36 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 37 H 0.10 -0.51 8.14 -2.39 -0.02 -0.52 16 38 H 0.42 -1.69 8.58 -92.71 -0.80 -2.49 16 39 H 0.07 -0.13 7.85 -2.38 -0.02 -0.15 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 42 H 0.09 -0.41 7.90 -2.39 -0.02 -0.43 16 43 H 0.41 -3.06 6.76 -92.71 -0.63 -3.69 16 44 H 0.17 -1.10 8.06 -2.91 -0.02 -1.13 16 45 H 0.17 -1.99 4.86 -2.91 -0.01 -2.01 16 46 H 0.12 -0.82 7.96 -2.39 -0.02 -0.84 16 47 H 0.40 -5.49 8.70 -74.06 -0.64 -6.13 16 48 H -0.30 -0.43 7.11 99.48 0.71 0.27 16 49 H -0.28 0.85 7.11 99.48 0.71 1.55 16 50 H 0.16 -1.33 6.41 -2.91 -0.02 -1.35 16 51 H 0.11 -1.05 8.08 -2.39 -0.02 -1.07 16 52 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: 0.00 -27.56 423.86 -0.81 -28.37 By element: Atomic # 1 Polarization: -17.66 SS G_CDS: -1.04 Total: -18.70 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: 5.40 Total: 16.37 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: -5.64 Total: -4.54 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -2.28 Total: -16.93 kcal Atomic # 9 Polarization: -1.61 SS G_CDS: 0.70 Total: -0.91 kcal Atomic # 14 Polarization: -5.70 SS G_CDS: 2.04 Total: -3.65 kcal Total: -27.56 -0.81 -28.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_12335834.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.343 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds