Wall clock time and date at job start Sat Mar 6 2021 19:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.52998 * 109.47021 * 239.99781 * 2 1 3 5 5 O 1.45205 * 109.46911 * 119.99874 * 2 1 3 6 6 C 1.34636 * 116.99806 * 60.00322 * 5 2 1 7 7 O 1.21503 * 120.00147 * 359.97438 * 6 5 2 8 8 N 1.34777 * 119.99531 * 179.97438 * 6 5 2 9 9 C 1.46499 * 119.99665 * 179.72227 * 8 6 5 10 10 C 1.53004 * 109.47198 * 180.27868 * 9 8 6 11 11 H 1.08997 * 112.84982 * 314.67110 * 10 9 8 12 12 C 1.53780 * 113.61608 * 85.86314 * 10 9 8 13 13 C 1.53948 * 87.02274 * 139.95062 * 12 10 9 14 14 H 1.09005 * 113.60983 * 89.19840 * 13 12 10 15 15 N 1.46492 * 113.67091 * 220.07021 * 13 12 10 16 16 C 1.34788 * 119.99731 * 252.56033 * 15 13 12 17 17 O 1.21278 * 120.00063 * 359.97438 * 16 15 13 18 18 C 1.50703 * 119.99676 * 179.97438 * 16 15 13 19 19 C 1.50699 * 109.46554 * 179.97438 * 18 16 15 20 20 C 1.38229 * 120.00235 * 269.72322 * 19 18 16 21 21 C 1.38233 * 120.00374 * 179.74714 * 20 19 18 22 22 C 1.38237 * 119.99668 * 0.55522 * 21 20 19 23 23 C 1.50700 * 120.00035 * 179.72660 * 22 21 20 24 24 O 1.42905 * 109.46888 * 244.97698 * 23 22 21 25 25 Si 1.86301 * 109.47121 * 4.97457 * 23 22 21 26 26 C 1.38233 * 119.99975 * 359.69998 * 22 21 20 27 27 C 1.38235 * 119.99948 * 0.02562 * 26 22 21 28 28 C 1.53778 * 113.61510 * 183.47206 * 10 9 8 29 29 H 1.08999 * 109.46874 * 299.99879 * 1 2 3 30 30 H 1.08996 * 109.47160 * 59.99677 * 1 2 3 31 31 H 1.08994 * 109.47124 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47127 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.46984 * 299.99604 * 3 2 1 34 34 H 1.08999 * 109.47210 * 60.00327 * 3 2 1 35 35 H 1.09000 * 109.47347 * 300.00334 * 4 2 1 36 36 H 1.09001 * 109.46931 * 59.99857 * 4 2 1 37 37 H 1.09004 * 109.46918 * 179.97438 * 4 2 1 38 38 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 39 39 H 1.09009 * 109.47454 * 300.27637 * 9 8 6 40 40 H 1.08998 * 109.47492 * 60.27932 * 9 8 6 41 41 H 1.09004 * 113.61666 * 254.53738 * 12 10 9 42 42 H 1.09001 * 113.61358 * 25.43349 * 12 10 9 43 43 H 0.97001 * 120.00614 * 72.55694 * 15 13 12 44 44 H 1.09000 * 109.47203 * 299.99669 * 18 16 15 45 45 H 1.08996 * 109.47029 * 60.00491 * 18 16 15 46 46 H 1.08001 * 120.00286 * 0.02562 * 20 19 18 47 47 H 1.07997 * 120.00599 * 180.27652 * 21 20 19 48 48 H 1.08998 * 109.47699 * 124.97429 * 23 22 21 49 49 H 0.96705 * 114.00030 * 179.97438 * 24 23 22 50 50 H 1.48499 * 109.99961 * 299.99937 * 25 23 22 51 51 H 1.48496 * 110.00081 * 61.32150 * 25 23 22 52 52 H 1.08000 * 119.99810 * 180.02562 * 26 22 21 53 53 H 1.08001 * 119.99894 * 179.97438 * 27 26 22 54 54 H 1.09003 * 113.61729 * 334.56167 * 28 10 9 55 55 H 1.09003 * 113.61852 * 105.46931 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4167 9 6 1.6694 -4.0652 2.5860 10 6 2.2654 -4.6117 3.8849 11 1 3.3145 -4.3457 4.0141 12 6 1.4013 -4.3302 5.1255 13 6 1.7567 -5.7521 5.5966 14 1 2.6664 -5.7989 6.1954 15 7 0.6344 -6.4662 6.2100 16 6 0.6127 -6.6700 7.5422 17 8 1.5225 -6.2627 8.2329 18 6 -0.5423 -7.4042 8.1734 19 6 -0.3246 -7.4980 9.6616 20 6 0.3479 -8.5815 10.1949 21 6 0.5521 -8.6650 11.5595 22 6 0.0737 -7.6705 12.3920 23 6 0.2909 -7.7645 13.8803 24 8 -0.9702 -7.9044 14.5378 25 14 1.3568 -9.2445 14.2601 26 6 -0.6035 -6.5895 11.8593 27 6 -0.8027 -6.5033 10.4941 28 6 1.9754 -6.1042 4.1156 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 2.6276 -2.2368 3.0830 39 1 0.5822 -4.1307 2.6293 40 1 2.0354 -4.6517 1.7433 41 1 1.8006 -3.5441 5.7665 42 1 0.3433 -4.1968 4.8996 43 1 -0.0932 -6.7922 5.6576 44 1 -1.4681 -6.8644 7.9745 45 1 -0.6087 -8.4073 7.7524 46 1 0.7178 -9.3607 9.5450 47 1 1.0814 -9.5093 11.9757 48 1 0.7862 -6.8599 14.2332 49 1 -0.9066 -7.9712 15.5004 50 1 0.6926 -10.4844 13.7840 51 1 2.6827 -9.0962 13.6081 52 1 -0.9768 -5.8124 12.5097 53 1 -1.3321 -5.6589 10.0779 54 1 1.0746 -6.4568 3.6132 55 1 2.8375 -6.7484 3.9426 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_12335836.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:52:25 Heat of formation + Delta-G solvation = -104.258702 kcal Electronic energy + Delta-G solvation = -33369.134617 eV Core-core repulsion = 28759.254278 eV Total energy + Delta-G solvation = -4609.880339 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.86786 -41.40615 -40.59302 -39.55014 -38.29867 -37.61023 -35.95791 -35.01959 -34.41047 -33.96148 -32.10106 -30.13522 -28.78686 -28.39304 -28.32589 -26.72807 -25.89949 -24.09580 -23.99327 -22.92554 -22.04506 -21.48428 -21.30684 -20.47507 -19.14906 -18.40538 -18.09652 -17.92796 -17.66733 -17.34440 -17.17477 -16.94754 -16.54647 -16.29999 -15.99272 -15.98202 -15.57993 -15.46327 -15.14493 -15.02989 -14.81334 -14.67365 -14.45877 -14.44411 -13.91345 -13.66742 -13.51677 -13.45840 -13.37369 -13.20141 -13.12056 -13.05732 -12.93398 -12.89552 -12.86566 -12.53004 -12.41266 -12.35261 -12.19459 -12.06252 -11.91413 -11.74019 -11.47117 -11.41381 -11.15099 -10.98164 -10.34748 -10.24260 -10.04724 -10.02645 -9.71498 -4.99629 0.10225 0.29387 1.15253 1.26428 1.57857 1.59839 1.72939 1.93205 2.14666 2.65773 3.09722 3.39760 3.42545 3.55475 3.57114 3.69052 3.71810 3.72623 3.76963 3.79086 3.81531 3.91981 3.95408 3.97928 4.19678 4.22801 4.31418 4.38918 4.44454 4.49521 4.52257 4.58755 4.58817 4.60622 4.70483 4.73847 4.74157 4.79969 4.81139 4.84955 4.85094 4.90188 4.94148 4.97074 5.05455 5.06834 5.19206 5.22188 5.24453 5.28143 5.35265 5.39475 5.44457 5.56434 5.58232 5.87416 6.35883 6.53507 6.87969 7.23889 7.30713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.701 5.701 9 C 0.152 3.848 10 C -0.111 4.111 11 H 0.110 0.890 12 C -0.144 4.144 13 C 0.116 3.884 14 H 0.094 0.906 15 N -0.708 5.708 16 C 0.514 3.486 17 O -0.581 6.581 18 C -0.099 4.099 19 C -0.071 4.071 20 C -0.112 4.112 21 C -0.146 4.146 22 C -0.097 4.097 23 C -0.079 4.079 24 O -0.562 6.562 25 Si 0.777 3.223 26 C -0.103 4.103 27 C -0.111 4.111 28 C -0.122 4.122 29 H 0.061 0.939 30 H 0.087 0.913 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.061 0.939 38 H 0.416 0.584 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.093 0.907 43 H 0.418 0.582 44 H 0.133 0.867 45 H 0.131 0.869 46 H 0.137 0.863 47 H 0.113 0.887 48 H 0.090 0.910 49 H 0.403 0.597 50 H -0.294 1.294 51 H -0.296 1.296 52 H 0.136 0.864 53 H 0.142 0.858 54 H 0.107 0.893 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 0.548 0.379 1.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.361 5.361 9 C 0.030 3.970 10 C -0.130 4.130 11 H 0.128 0.872 12 C -0.182 4.182 13 C 0.010 3.990 14 H 0.112 0.888 15 N -0.360 5.360 16 C 0.302 3.698 17 O -0.461 6.461 18 C -0.138 4.138 19 C -0.071 4.071 20 C -0.130 4.130 21 C -0.163 4.163 22 C -0.097 4.097 23 C -0.189 4.189 24 O -0.372 6.372 25 Si 0.684 3.316 26 C -0.121 4.121 27 C -0.129 4.129 28 C -0.160 4.160 29 H 0.080 0.920 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.080 0.920 38 H 0.252 0.748 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.256 0.744 44 H 0.151 0.849 45 H 0.149 0.851 46 H 0.155 0.845 47 H 0.130 0.870 48 H 0.108 0.892 49 H 0.254 0.746 50 H -0.222 1.222 51 H -0.224 1.224 52 H 0.154 0.846 53 H 0.160 0.840 54 H 0.126 0.874 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.359 -0.007 -0.513 0.627 hybrid contribution -0.078 0.325 -0.361 0.492 sum -0.437 0.317 -0.875 1.028 Atomic orbital electron populations 1.22471 0.94005 1.03715 1.03502 1.22350 0.94493 0.92558 0.81529 1.21897 1.02447 0.90952 1.04239 1.22475 1.01624 1.02273 0.97351 1.86313 1.71599 1.23409 1.47282 1.18368 0.78816 0.80774 0.82568 1.90902 1.42305 1.71013 1.44361 1.44767 1.55148 1.13104 1.23059 1.21376 0.99795 0.78142 0.97677 1.22539 1.00896 0.96988 0.92556 0.87154 1.23588 1.00980 0.97036 0.96644 1.22475 0.90430 0.92452 0.93598 0.88826 1.45897 1.24971 1.58061 1.07059 1.20964 0.87478 0.78813 0.82576 1.90738 1.39802 1.52442 1.63097 1.20771 0.98192 1.04247 0.90601 1.19602 0.97707 0.94381 0.95411 1.21144 0.98381 0.98921 0.94563 1.21004 1.01938 0.98332 0.95057 1.19717 0.99709 0.95575 0.94703 1.24819 0.92797 1.11044 0.90238 1.86438 1.27919 1.96804 1.26048 0.94560 0.74105 0.74174 0.88793 1.21188 0.97522 0.97805 0.95553 1.21349 0.99628 0.98605 0.93329 1.23292 1.04071 0.95235 0.93437 0.92000 0.89442 0.91721 0.91219 0.88275 0.91237 0.91729 0.89443 0.91974 0.74781 0.91179 0.91210 0.91563 0.88870 0.74404 0.84890 0.85143 0.84530 0.86953 0.89230 0.74576 1.22169 1.22369 0.84611 0.84025 0.87441 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 8.37 71.98 0.60 0.04 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.26 8.85 71.98 0.64 0.89 16 4 C -0.18 -0.58 8.37 71.98 0.60 0.02 16 5 O -0.37 -2.10 9.94 -55.45 -0.55 -2.65 16 6 C 0.64 4.11 8.06 129.79 1.05 5.16 16 7 O -0.59 -6.85 11.88 19.83 0.24 -6.61 16 8 N -0.70 0.22 5.56 -590.85 -3.29 -3.07 16 9 C 0.15 -0.51 5.50 86.38 0.47 -0.04 16 10 C -0.11 0.77 3.75 -10.27 -0.04 0.73 16 11 H 0.11 -0.86 8.14 -2.39 -0.02 -0.88 16 12 C -0.14 0.70 7.45 31.18 0.23 0.93 16 13 C 0.12 -0.40 4.24 45.58 0.19 -0.21 16 14 H 0.09 0.17 7.46 -2.38 -0.02 0.16 16 15 N -0.71 3.19 5.36 -439.75 -2.36 0.83 16 16 C 0.51 0.98 7.82 87.66 0.69 1.66 16 17 O -0.58 -7.29 15.63 -3.02 -0.05 -7.34 16 18 C -0.10 0.32 5.83 29.10 0.17 0.49 16 19 C -0.07 -0.32 4.37 -19.87 -0.09 -0.41 16 20 C -0.11 -0.78 9.70 22.27 0.22 -0.56 16 21 C -0.15 -1.38 8.67 22.27 0.19 -1.19 16 22 C -0.10 -0.83 5.38 -19.87 -0.11 -0.94 16 23 C -0.08 -0.22 2.79 71.24 0.20 -0.02 16 24 O -0.56 -1.14 12.81 -148.98 -1.91 -3.04 16 25 Si 0.78 0.81 29.85 68.60 2.05 2.86 16 26 C -0.10 -0.75 9.69 22.27 0.22 -0.53 16 27 C -0.11 -0.59 9.70 22.27 0.22 -0.38 16 28 C -0.12 0.98 7.40 31.12 0.23 1.21 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 31 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 32 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 33 H 0.10 -0.52 8.14 -2.39 -0.02 -0.53 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 36 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 38 H 0.42 -1.70 8.58 -92.71 -0.80 -2.49 16 39 H 0.07 -0.16 7.88 -2.38 -0.02 -0.18 16 40 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 41 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 42 H 0.09 -0.50 7.92 -2.39 -0.02 -0.52 16 43 H 0.42 -4.61 8.73 -92.71 -0.81 -5.42 16 44 H 0.13 -1.14 8.09 -2.39 -0.02 -1.16 16 45 H 0.13 -1.07 8.08 -2.39 -0.02 -1.09 16 46 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 47 H 0.11 1.00 4.87 -2.91 -0.01 0.98 16 48 H 0.09 -0.07 7.96 -2.39 -0.02 -0.09 16 49 H 0.40 -3.58 8.74 -74.05 -0.65 -4.23 16 50 H -0.29 -2.31 7.05 99.48 0.70 -1.61 16 51 H -0.30 -2.23 7.11 99.48 0.71 -1.52 16 52 H 0.14 0.59 8.06 -2.91 -0.02 0.57 16 53 H 0.14 0.10 8.06 -2.91 -0.02 0.08 16 54 H 0.11 -1.14 8.08 -2.39 -0.02 -1.16 16 55 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 Total: 0.00 -29.16 444.14 -1.50 -30.66 By element: Atomic # 1 Polarization: -17.56 SS G_CDS: -1.30 Total: -18.86 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 5.67 Total: 7.23 kcal Atomic # 7 Polarization: 3.40 SS G_CDS: -5.64 Total: -2.24 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -2.27 Total: -19.64 kcal Atomic # 14 Polarization: 0.81 SS G_CDS: 2.05 Total: 2.86 kcal Total: -29.16 -1.50 -30.66 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_12335836.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.599 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds