Wall clock time and date at job start Sat Mar 6 2021 19:54:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46858 * 2 1 4 4 C 1.53004 * 109.47054 * 240.00370 * 2 1 3 5 5 O 1.45206 * 109.47525 * 120.00118 * 2 1 3 6 6 C 1.34633 * 116.99789 * 60.00053 * 5 2 1 7 7 O 1.21509 * 119.99817 * 359.97438 * 6 5 2 8 8 N 1.34775 * 119.99757 * 180.02562 * 6 5 2 9 9 C 1.46497 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.47333 * 180.02562 * 9 8 6 11 11 H 1.09002 * 112.84450 * 43.80651 * 10 9 8 12 12 C 1.53777 * 113.61743 * 175.00328 * 10 9 8 13 13 C 1.53778 * 87.08116 * 139.98164 * 12 10 9 14 14 H 1.08997 * 113.61515 * 89.20415 * 13 12 10 15 15 N 1.46501 * 113.61106 * 220.01975 * 13 12 10 16 16 C 1.34771 * 119.99960 * 205.00065 * 15 13 12 17 17 O 1.21513 * 120.00334 * 0.02562 * 16 15 13 18 18 C 1.48172 * 120.00223 * 179.97438 * 16 15 13 19 19 N 1.32712 * 119.72209 * 0.02562 * 18 16 15 20 20 C 1.31524 * 121.64652 * 180.02562 * 19 18 16 21 21 C 1.38560 * 120.89865 * 0.02562 * 20 19 18 22 22 C 1.50704 * 120.32502 * 179.97438 * 21 20 19 23 23 O 1.42895 * 109.47263 * 245.00126 * 22 21 20 24 24 Si 1.86302 * 109.46716 * 4.99551 * 22 21 20 25 25 C 1.38628 * 119.35492 * 359.97438 * 21 20 19 26 26 C 1.38587 * 118.48695 * 359.97438 * 25 21 20 27 27 C 1.53775 * 113.61297 * 272.50035 * 10 9 8 28 28 H 1.09002 * 109.47162 * 299.99580 * 1 2 3 29 29 H 1.08999 * 109.47202 * 59.99741 * 1 2 3 30 30 H 1.09002 * 109.46614 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46768 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47068 * 299.99751 * 3 2 1 33 33 H 1.08997 * 109.47337 * 60.00324 * 3 2 1 34 34 H 1.08994 * 109.46644 * 299.99435 * 4 2 1 35 35 H 1.08999 * 109.47207 * 59.99892 * 4 2 1 36 36 H 1.09000 * 109.46598 * 180.02562 * 4 2 1 37 37 H 0.96997 * 120.00447 * 0.02562 * 8 6 5 38 38 H 1.09006 * 109.47276 * 60.00033 * 9 8 6 39 39 H 1.09001 * 109.47325 * 300.00136 * 9 8 6 40 40 H 1.09002 * 113.61375 * 25.42736 * 12 10 9 41 41 H 1.09009 * 113.61141 * 254.53340 * 12 10 9 42 42 H 0.97002 * 119.99945 * 24.99455 * 15 13 12 43 43 H 1.07995 * 119.55324 * 179.71437 * 20 19 18 44 44 H 1.08994 * 109.47265 * 124.99616 * 22 21 20 45 45 H 0.96699 * 114.00173 * 179.97438 * 23 22 21 46 46 H 1.48508 * 109.99852 * 178.68073 * 24 22 21 47 47 H 1.48497 * 110.00265 * 299.99786 * 24 22 21 48 48 H 1.07998 * 120.75303 * 180.02562 * 25 21 20 49 49 H 1.08003 * 120.47095 * 179.97438 * 26 25 21 50 50 H 1.08998 * 113.61906 * 105.46394 * 27 10 9 51 51 H 1.09002 * 113.61908 * 334.56541 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0141 -0.6845 1.1856 6 6 1.6524 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0674 -2.6654 2.4171 9 6 1.6734 -4.0665 2.5835 10 6 2.2726 -4.6143 3.8804 11 1 2.1777 -3.9211 4.7163 12 6 1.8189 -6.0456 4.2124 13 6 3.2635 -6.3143 4.6658 14 1 3.4405 -6.0877 5.7172 15 7 3.7648 -7.6345 4.2762 16 6 4.7537 -8.2157 4.9839 17 8 5.2291 -7.6448 5.9454 18 6 5.2604 -9.5512 4.5902 19 7 4.7368 -10.1701 3.5394 20 6 5.1573 -11.3561 3.1568 21 6 6.1697 -12.0075 3.8429 22 6 6.6411 -13.3666 3.3936 23 8 6.3379 -14.3332 4.4014 24 14 5.7783 -13.8305 1.8089 25 6 6.7447 -11.3969 4.9466 26 6 6.2823 -10.1468 5.3261 27 6 3.6896 -5.1870 3.7105 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6766 -0.2073 -2.1393 36 1 3.1300 -0.7215 -1.2490 37 1 2.6264 -2.2364 3.0836 38 1 2.0398 -4.6499 1.7388 39 1 0.5865 -4.1355 2.6284 40 1 1.5212 -6.6233 3.3373 41 1 1.0905 -6.0960 5.0219 42 1 3.3850 -8.0905 3.5088 43 1 4.7040 -11.8309 2.2993 44 1 7.7179 -13.3409 3.2270 45 1 6.6135 -15.2330 4.1790 46 1 6.2580 -15.1548 1.3383 47 1 4.3093 -13.8691 2.0228 48 1 7.5355 -11.8841 5.4977 49 1 6.7071 -9.6421 6.1813 50 1 4.4717 -4.5445 4.1147 51 1 3.9035 -5.5301 2.6982 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_13287726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:54:06 Heat of formation + Delta-G solvation = -85.830238 kcal Electronic energy + Delta-G solvation = -31735.844480 eV Core-core repulsion = 27216.874968 eV Total energy + Delta-G solvation = -4518.969513 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.188 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.95572 -41.78801 -40.84910 -39.55250 -38.27639 -37.94575 -35.96405 -35.06332 -34.47969 -33.60080 -33.00580 -29.22538 -28.36829 -28.30254 -27.74924 -26.70576 -25.05934 -24.62410 -23.43795 -22.68828 -21.73023 -21.38281 -20.61664 -19.25184 -19.00637 -18.66250 -18.22831 -17.72772 -17.31740 -17.12647 -16.87890 -16.44516 -16.31652 -16.29396 -15.87895 -15.56919 -15.48590 -15.44697 -15.14156 -14.87748 -14.51352 -14.41742 -14.30044 -14.04282 -13.95269 -13.47908 -13.42899 -13.33603 -13.16635 -13.00750 -12.90677 -12.86669 -12.54963 -12.50786 -12.38656 -12.22808 -12.10976 -11.73403 -11.47213 -11.40913 -11.37743 -11.11644 -11.07379 -10.79255 -10.53864 -10.33138 -10.20673 -10.02651 -4.93615 -0.60512 0.07271 1.17960 1.23140 1.51741 1.59320 1.76114 1.94075 1.98474 2.61763 2.92957 3.12799 3.26959 3.43721 3.57756 3.62577 3.66323 3.74476 3.76716 3.78940 3.79703 3.82670 3.89895 3.94510 4.16001 4.21880 4.37974 4.40680 4.51869 4.57322 4.61192 4.63104 4.71242 4.76312 4.76661 4.81139 4.82727 4.85833 4.87480 4.90224 4.98355 5.00029 5.06590 5.08898 5.19427 5.27009 5.28274 5.36474 5.37535 5.54337 5.59914 6.27635 6.39719 6.53904 6.60727 7.03912 7.34188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.152 3.848 10 C -0.107 4.107 11 H 0.117 0.883 12 C -0.124 4.124 13 C 0.111 3.889 14 H 0.106 0.894 15 N -0.690 5.690 16 C 0.570 3.430 17 O -0.566 6.566 18 C 0.060 3.940 19 N -0.459 5.459 20 C 0.098 3.902 21 C -0.104 4.104 22 C -0.082 4.082 23 O -0.557 6.557 24 Si 0.760 3.240 25 C -0.054 4.054 26 C -0.116 4.116 27 C -0.143 4.143 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.068 0.932 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.419 0.581 43 H 0.182 0.818 44 H 0.110 0.890 45 H 0.400 0.600 46 H -0.281 1.281 47 H -0.292 1.292 48 H 0.163 0.837 49 H 0.151 0.849 50 H 0.074 0.926 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -0.958 -2.755 3.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.029 3.971 10 C -0.126 4.126 11 H 0.135 0.865 12 C -0.163 4.163 13 C 0.007 3.993 14 H 0.124 0.876 15 N -0.340 5.340 16 C 0.356 3.644 17 O -0.445 6.445 18 C -0.077 4.077 19 N -0.170 5.170 20 C -0.061 4.061 21 C -0.106 4.106 22 C -0.191 4.191 23 O -0.367 6.367 24 Si 0.664 3.336 25 C -0.080 4.080 26 C -0.137 4.137 27 C -0.182 4.182 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.108 0.892 42 H 0.257 0.743 43 H 0.199 0.801 44 H 0.127 0.873 45 H 0.251 0.749 46 H -0.208 1.208 47 H -0.219 1.219 48 H 0.181 0.819 49 H 0.169 0.831 50 H 0.092 0.908 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.149 -0.330 -3.085 3.309 hybrid contribution 0.914 -1.575 1.203 2.183 sum 2.063 -1.905 -1.882 3.381 Atomic orbital electron populations 1.22471 0.94023 1.03702 1.03499 1.22354 0.94485 0.92581 0.81556 1.21891 1.02436 0.90920 1.04234 1.22470 1.01606 1.02262 0.97348 1.86311 1.71573 1.23379 1.47257 1.18373 0.78817 0.80783 0.82580 1.90905 1.42317 1.71043 1.44394 1.44749 1.55234 1.12894 1.23095 1.21372 0.99990 0.78162 0.97534 1.22531 0.95844 0.96961 0.97258 0.86467 1.23313 0.95199 0.94825 1.02931 1.22679 0.95444 0.81158 1.00041 0.87585 1.45821 1.36130 1.19724 1.32278 1.18077 0.79981 0.84169 0.82173 1.90779 1.59650 1.64956 1.29118 1.21163 0.96656 0.95540 0.94355 1.67507 1.26671 1.09870 1.12952 1.22964 0.93224 0.90533 0.99420 1.20784 0.96696 0.96463 0.96694 1.24905 1.06361 0.86890 1.00913 1.86534 1.85093 1.21777 1.43335 0.94175 0.76930 0.84292 0.78184 1.21763 0.98693 0.92937 0.94572 1.22297 0.95547 0.95636 1.00182 1.23565 0.97123 0.97047 1.00416 0.91962 0.89470 0.91761 0.91220 0.88316 0.91198 0.91762 0.89460 0.91985 0.74673 0.91370 0.91153 0.87960 0.89156 0.74274 0.80142 0.87268 0.74864 1.20770 1.21931 0.81898 0.83088 0.90761 0.89207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.24 8.85 71.98 0.64 0.88 16 4 C -0.18 -0.62 8.37 71.98 0.60 -0.02 16 5 O -0.37 -2.16 9.94 -55.42 -0.55 -2.71 16 6 C 0.64 4.37 8.06 129.79 1.05 5.42 16 7 O -0.60 -7.22 11.88 19.81 0.24 -6.98 16 8 N -0.70 -0.03 5.56 -590.85 -3.29 -3.32 16 9 C 0.15 -0.37 5.51 86.38 0.48 0.10 16 10 C -0.11 0.67 3.75 -10.27 -0.04 0.63 16 11 H 0.12 -0.96 8.14 -2.39 -0.02 -0.98 16 12 C -0.12 0.75 7.39 31.12 0.23 0.98 16 13 C 0.11 -0.16 4.24 45.52 0.19 0.03 16 14 H 0.11 0.18 7.46 -2.39 -0.02 0.16 16 15 N -0.69 -0.86 5.34 -442.62 -2.37 -3.23 16 16 C 0.57 4.03 7.81 86.88 0.68 4.71 16 17 O -0.57 -7.44 15.92 -3.76 -0.06 -7.50 16 18 C 0.06 0.32 6.75 41.91 0.28 0.60 16 19 N -0.46 -1.49 9.54 -184.91 -1.76 -3.25 16 20 C 0.10 0.01 9.84 84.82 0.83 0.84 16 21 C -0.10 0.08 5.40 -19.69 -0.11 -0.03 16 22 C -0.08 0.40 2.81 71.24 0.20 0.60 16 23 O -0.56 1.05 12.82 -148.98 -1.91 -0.86 16 24 Si 0.76 -4.38 29.88 68.60 2.05 -2.34 16 25 C -0.05 0.00 9.83 22.45 0.22 0.22 16 26 C -0.12 -0.40 9.63 22.61 0.22 -0.18 16 27 C -0.14 0.52 7.43 31.12 0.23 0.75 16 28 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 31 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.14 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 35 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.42 -1.72 8.58 -92.71 -0.80 -2.51 16 38 H 0.07 -0.06 7.85 -2.38 -0.02 -0.07 16 39 H 0.07 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.10 -0.75 8.08 -2.39 -0.02 -0.77 16 41 H 0.09 -0.61 8.14 -2.38 -0.02 -0.63 16 42 H 0.42 -0.67 8.06 -92.71 -0.75 -1.41 16 43 H 0.18 -0.82 4.88 -2.91 -0.01 -0.83 16 44 H 0.11 -1.06 7.96 -2.39 -0.02 -1.08 16 45 H 0.40 -3.91 8.74 -74.06 -0.65 -4.56 16 46 H -0.28 0.40 7.11 99.48 0.71 1.10 16 47 H -0.29 -0.38 7.05 99.48 0.70 0.32 16 48 H 0.16 -0.66 8.06 -2.91 -0.02 -0.68 16 49 H 0.15 0.45 7.64 -2.91 -0.02 0.43 16 50 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 51 H 0.09 -0.28 7.90 -2.39 -0.02 -0.30 16 Total: 0.00 -23.31 416.75 -2.53 -25.84 By element: Atomic # 1 Polarization: -10.41 SS G_CDS: -1.18 Total: -11.58 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.30 Total: 15.93 kcal Atomic # 7 Polarization: -2.38 SS G_CDS: -7.42 Total: -9.80 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -2.28 Total: -18.05 kcal Atomic # 14 Polarization: -4.38 SS G_CDS: 2.05 Total: -2.34 kcal Total: -23.31 -2.53 -25.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_13287726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.989 kcal (2) G-P(sol) polarization free energy of solvation -23.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds