Wall clock time and date at job start Sat Mar 6 2021 19:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.36414 * 125.79954 * 2 1 4 4 C 1.47378 * 127.19307 * 0.02562 * 3 2 1 5 5 O 1.21606 * 120.00243 * 359.97438 * 4 3 2 6 6 N 1.34777 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99843 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.90816 * 23.74366 * 7 6 4 9 9 C 1.53784 * 113.61491 * 154.99806 * 7 6 4 10 10 C 1.53787 * 87.07923 * 139.97939 * 9 7 6 11 11 H 1.08998 * 113.61103 * 89.12089 * 10 9 7 12 12 C 1.53003 * 113.61385 * 220.01697 * 10 9 7 13 13 N 1.46498 * 109.47015 * 185.00396 * 12 10 9 14 14 C 1.34775 * 120.00104 * 180.02562 * 13 12 10 15 15 O 1.21512 * 119.99734 * 359.97438 * 14 13 12 16 16 O 1.34632 * 120.00366 * 179.97438 * 14 13 12 17 17 C 1.45196 * 117.00375 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.46956 * 60.00058 * 17 16 14 19 19 C 1.52997 * 109.47580 * 180.02562 * 17 16 14 20 20 C 1.53001 * 109.47163 * 300.00437 * 17 16 14 21 21 C 1.53778 * 87.08035 * 334.56830 * 10 9 7 22 22 C 1.47025 * 105.61503 * 180.26226 * 3 2 1 23 23 C 1.34187 * 105.95313 * 359.57202 * 22 3 2 24 24 C 1.50694 * 125.43570 * 180.14352 * 23 22 3 25 25 O 1.42891 * 109.47347 * 300.36211 * 24 23 22 26 26 Si 1.86302 * 109.46677 * 180.36354 * 24 23 22 27 27 O 1.33650 * 125.80282 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.47410 * 89.99702 * 1 2 3 29 29 H 1.09005 * 109.46872 * 209.99870 * 1 2 3 30 30 H 1.09000 * 109.47340 * 329.99733 * 1 2 3 31 31 H 0.97002 * 120.00010 * 359.97438 * 6 4 3 32 32 H 1.09004 * 113.61451 * 25.43425 * 9 7 6 33 33 H 1.08994 * 113.61477 * 254.52726 * 9 7 6 34 34 H 1.08996 * 109.47095 * 305.00324 * 12 10 9 35 35 H 1.09005 * 109.46621 * 65.00138 * 12 10 9 36 36 H 0.97004 * 120.00129 * 359.97438 * 13 12 10 37 37 H 1.08997 * 109.47135 * 59.99768 * 18 17 16 38 38 H 1.09001 * 109.47677 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47412 * 300.00129 * 18 17 16 40 40 H 1.09004 * 109.47114 * 60.00065 * 19 17 16 41 41 H 1.08996 * 109.47312 * 180.02562 * 19 17 16 42 42 H 1.09000 * 109.47017 * 300.00120 * 19 17 16 43 43 H 1.09001 * 109.47161 * 59.99898 * 20 17 16 44 44 H 1.09002 * 109.47548 * 179.97438 * 20 17 16 45 45 H 1.08994 * 109.47064 * 299.99503 * 20 17 16 46 46 H 1.08999 * 113.61111 * 139.98327 * 21 10 9 47 47 H 1.08999 * 113.61280 * 270.79710 * 21 10 9 48 48 H 1.08003 * 127.02219 * 179.73819 * 22 3 2 49 49 H 1.08997 * 109.47389 * 60.36799 * 24 23 22 50 50 H 0.96701 * 114.00314 * 300.00115 * 25 24 23 51 51 H 1.48500 * 109.99972 * 58.68171 * 26 24 23 52 52 H 1.48504 * 109.99640 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.1064 0.0000 4 6 1.8738 2.5157 0.0005 5 8 0.6889 2.7892 0.0006 6 7 2.7929 3.5015 0.0010 7 6 2.3644 4.9025 0.0009 8 1 1.3613 5.0394 0.4048 9 6 3.4052 5.8650 0.5970 10 6 3.0282 6.8438 -0.5277 11 1 2.2066 7.5115 -0.2682 12 6 4.2279 7.5807 -1.1266 13 7 3.7575 8.5700 -2.0993 14 6 4.6443 9.3423 -2.7577 15 8 5.8341 9.2183 -2.5442 16 8 4.2120 10.2511 -3.6521 17 6 5.2232 11.0482 -4.3232 18 6 6.1680 10.1269 -5.0973 19 6 4.5467 12.0180 -5.2941 20 6 6.0203 11.8402 -3.2848 21 6 2.5900 5.6156 -1.3427 22 6 3.6848 0.5991 -0.0065 23 6 3.5859 -0.7391 -0.0001 24 6 4.7459 -1.7010 -0.0001 25 8 5.5428 -1.4861 -1.1665 26 14 4.1026 -3.4494 -0.0009 27 8 2.2888 -1.0839 -0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.7381 3.2834 0.0013 32 1 4.4290 5.4969 0.5304 33 1 3.1474 6.2244 1.5931 34 1 4.7779 8.0853 -0.3323 35 1 4.8826 6.8649 -1.6238 36 1 2.8077 8.6687 -2.2701 37 1 5.6002 9.5626 -5.8370 38 1 6.9274 10.7252 -5.6008 39 1 6.6500 9.4363 -4.4052 40 1 3.8738 12.6743 -4.7423 41 1 5.3058 12.6160 -5.7982 42 1 3.9785 11.4541 -6.0339 43 1 6.5023 11.1496 -2.5928 44 1 6.7797 12.4383 -3.7885 45 1 5.3473 12.4965 -2.7333 46 1 1.6743 5.7737 -1.9123 47 1 3.3906 5.1802 -1.9406 48 1 4.5927 1.1841 -0.0122 49 1 5.3533 -1.5378 0.8901 50 1 5.0659 -1.6143 -1.9979 51 1 3.2468 -3.6752 -1.1933 52 1 5.2370 -4.4079 -0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_13308374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:54:26 Heat of formation + Delta-G solvation = -112.346686 kcal Electronic energy + Delta-G solvation = -32863.453287 eV Core-core repulsion = 28218.303794 eV Total energy + Delta-G solvation = -4645.149493 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 367.192 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.77190 -41.85359 -41.10165 -39.58427 -38.29016 -38.16321 -35.96440 -35.04983 -34.49369 -33.81636 -33.05481 -29.60630 -28.90178 -28.38881 -28.32067 -26.71783 -26.07570 -24.78192 -23.65505 -22.85301 -21.88125 -21.46285 -21.00403 -20.21452 -19.15562 -18.94427 -17.99755 -17.78909 -17.72724 -17.34130 -17.20154 -16.79523 -16.45350 -16.06217 -15.98164 -15.87828 -15.72185 -15.47511 -15.40984 -14.82517 -14.68659 -14.44598 -14.24446 -14.18873 -13.94426 -13.84110 -13.47039 -13.43519 -13.34921 -13.17233 -13.01246 -12.94069 -12.92447 -12.88525 -12.82904 -12.51810 -12.39898 -12.21545 -12.17779 -11.73284 -11.45638 -11.40606 -11.16486 -11.10782 -10.95055 -10.74318 -10.23485 -10.06979 -9.57767 -4.94732 0.22329 0.81410 1.15904 1.17506 1.42075 1.69534 1.73738 1.90893 2.18784 2.23162 3.10844 3.16139 3.37940 3.43076 3.57766 3.69330 3.72496 3.75618 3.77335 3.77931 3.84162 3.92531 4.11132 4.19486 4.38290 4.39835 4.47953 4.50311 4.58824 4.59119 4.61268 4.65144 4.70979 4.74329 4.74659 4.78010 4.81773 4.82732 4.85567 4.87499 4.97965 5.05619 5.07563 5.13440 5.20085 5.21738 5.24930 5.28993 5.36050 5.56613 5.58314 5.88496 6.32664 6.37171 6.49210 7.15938 7.31784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.085 3.915 3 C -0.270 4.270 4 C 0.589 3.411 5 O -0.574 6.574 6 N -0.702 5.702 7 C 0.118 3.882 8 H 0.105 0.895 9 C -0.123 4.123 10 C -0.108 4.108 11 H 0.116 0.884 12 C 0.152 3.848 13 N -0.700 5.700 14 C 0.641 3.359 15 O -0.595 6.595 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.145 4.145 22 C -0.147 4.147 23 C -0.058 4.058 24 C -0.032 4.032 25 O -0.534 6.534 26 Si 0.770 3.230 27 O -0.172 6.172 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.412 0.588 32 H 0.102 0.898 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.087 0.913 48 H 0.177 0.823 49 H 0.158 0.842 50 H 0.390 0.610 51 H -0.296 1.296 52 H -0.282 1.282 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.640 0.011 1.660 1.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.031 3.969 3 C -0.275 4.275 4 C 0.378 3.622 5 O -0.456 6.456 6 N -0.353 5.353 7 C 0.013 3.987 8 H 0.123 0.877 9 C -0.162 4.162 10 C -0.127 4.127 11 H 0.134 0.866 12 C 0.030 3.970 13 N -0.360 5.360 14 C 0.394 3.606 15 O -0.487 6.487 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.184 4.184 22 C -0.167 4.167 23 C -0.106 4.106 24 C -0.142 4.142 25 O -0.342 6.342 26 Si 0.674 3.326 27 O -0.069 6.069 28 H 0.113 0.887 29 H 0.120 0.880 30 H 0.117 0.883 31 H 0.249 0.751 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.106 0.894 48 H 0.194 0.806 49 H 0.175 0.825 50 H 0.240 0.760 51 H -0.223 1.223 52 H -0.209 1.209 Dipole moment (debyes) X Y Z Total from point charges -0.505 -0.724 1.739 1.950 hybrid contribution 0.353 0.531 -1.331 1.476 sum -0.153 -0.193 0.408 0.477 Atomic orbital electron populations 1.20709 0.82595 1.05759 1.05031 1.23243 0.94794 0.83023 0.95836 1.21258 0.94203 0.93645 1.18351 1.17389 0.85317 0.84452 0.75007 1.90748 1.17935 1.84539 1.52373 1.45708 1.09883 1.05499 1.74170 1.22550 0.99931 0.78587 0.97636 0.87750 1.23307 0.99800 0.94188 0.98875 1.22539 0.97842 0.95329 0.97000 0.86592 1.21375 0.96403 0.89207 0.90060 1.44761 1.09882 1.38309 1.43061 1.18378 0.84582 0.79007 0.78599 1.90905 1.16206 1.72370 1.69174 1.86308 1.41764 1.48055 1.52399 1.22352 0.86750 0.89879 0.91995 1.22470 1.00021 1.00670 1.00530 1.21890 1.02001 0.97793 0.97797 1.22470 1.00973 1.00564 0.99670 1.23573 1.02295 0.95715 0.96826 1.22793 0.96409 0.93645 1.03811 1.22836 0.82848 0.95953 1.08997 1.24485 0.90097 1.06971 0.92606 1.86640 1.39382 1.91706 1.16453 0.93527 0.78806 0.72242 0.88006 1.83675 1.16796 1.35035 1.71440 0.88676 0.88036 0.88328 0.75076 0.87922 0.89133 0.91114 0.91497 0.74693 0.92041 0.89457 0.91776 0.91155 0.88304 0.91261 0.91764 0.89470 0.91912 0.91123 0.89443 0.80574 0.82471 0.76006 1.22285 1.20895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.00 9.89 71.23 0.70 0.70 16 2 C 0.08 0.27 7.37 25.26 0.19 0.46 16 3 C -0.27 -0.94 6.31 -18.99 -0.12 -1.06 16 4 C 0.59 3.05 7.81 86.65 0.68 3.73 16 5 O -0.57 -6.49 14.44 -4.05 -0.06 -6.54 16 6 N -0.70 0.86 5.35 -443.34 -2.37 -1.52 16 7 C 0.12 -0.33 4.24 45.52 0.19 -0.14 16 8 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 9 C -0.12 0.91 7.39 31.12 0.23 1.14 16 10 C -0.11 0.74 3.75 -10.27 -0.04 0.70 16 11 H 0.12 -0.99 8.14 -2.39 -0.02 -1.01 16 12 C 0.15 -0.44 5.51 86.38 0.48 0.04 16 13 N -0.70 0.08 5.56 -590.86 -3.29 -3.20 16 14 C 0.64 4.29 8.06 129.79 1.05 5.34 16 15 O -0.60 -7.13 11.88 19.80 0.24 -6.89 16 16 O -0.37 -2.15 9.94 -55.42 -0.55 -2.70 16 17 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 18 C -0.18 -0.64 8.37 71.98 0.60 -0.03 16 19 C -0.14 0.24 8.85 71.98 0.64 0.88 16 20 C -0.18 -0.60 8.37 71.98 0.60 0.00 16 21 C -0.15 0.61 7.43 31.12 0.23 0.84 16 22 C -0.15 0.06 10.46 23.65 0.25 0.31 16 23 C -0.06 0.02 6.20 24.76 0.15 0.17 16 24 C -0.03 0.11 2.98 71.23 0.21 0.32 16 25 O -0.53 0.61 12.86 -148.98 -1.92 -1.31 16 26 Si 0.77 -1.98 32.08 68.60 2.20 0.22 16 27 O -0.17 -0.34 8.89 4.50 0.04 -0.30 16 28 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.10 -0.43 8.14 -2.38 -0.02 -0.45 16 30 H 0.10 0.29 6.48 -2.39 -0.02 0.28 16 31 H 0.41 -2.39 7.90 -92.71 -0.73 -3.13 16 32 H 0.10 -0.94 8.08 -2.39 -0.02 -0.96 16 33 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 34 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 35 H 0.07 -0.08 7.84 -2.38 -0.02 -0.10 16 36 H 0.42 -1.75 8.58 -92.71 -0.80 -2.55 16 37 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 38 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.06 0.56 5.88 -2.39 -0.01 0.55 16 40 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 41 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 42 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 43 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 44 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 45 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 46 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.09 -0.32 7.89 -2.39 -0.02 -0.33 16 48 H 0.18 -0.90 7.74 -2.91 -0.02 -0.92 16 49 H 0.16 -1.16 7.96 -2.39 -0.02 -1.18 16 50 H 0.39 -2.26 8.70 -74.06 -0.64 -2.90 16 51 H -0.30 -1.19 7.11 99.48 0.71 -0.48 16 52 H -0.28 -0.87 7.11 99.48 0.71 -0.16 16 Total: 0.00 -22.09 425.60 -0.85 -22.93 By element: Atomic # 1 Polarization: -13.33 SS G_CDS: -1.17 Total: -14.51 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.03 Total: 13.80 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -5.66 Total: -4.72 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -2.25 Total: -17.74 kcal Atomic # 14 Polarization: -1.98 SS G_CDS: 2.20 Total: 0.22 kcal Total: -22.09 -0.85 -22.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_13308374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.413 kcal (2) G-P(sol) polarization free energy of solvation -22.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds