Wall clock time and date at job start Sat Mar 6 2021 19:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37872 * 126.45779 * 2 1 4 4 C 1.46668 * 126.23583 * 359.93303 * 3 2 1 5 5 O 1.21697 * 119.99794 * 359.97438 * 4 3 2 6 6 N 1.34773 * 120.00106 * 179.97438 * 4 3 2 7 7 C 1.46501 * 119.99998 * 179.97438 * 6 4 3 8 8 H 1.09002 * 112.90879 * 23.74927 * 7 6 4 9 9 C 1.53781 * 113.61611 * 154.99655 * 7 6 4 10 10 C 1.53781 * 87.08107 * 139.98383 * 9 7 6 11 11 H 1.08995 * 113.61369 * 89.20374 * 10 9 7 12 12 C 1.53006 * 113.61256 * 220.02188 * 10 9 7 13 13 N 1.46500 * 109.46998 * 185.00048 * 12 10 9 14 14 C 1.34769 * 120.00237 * 180.02562 * 13 12 10 15 15 O 1.21517 * 119.99865 * 359.97438 * 14 13 12 16 16 O 1.34639 * 120.00496 * 180.02562 * 14 13 12 17 17 C 1.45198 * 117.00334 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47082 * 59.99926 * 17 16 14 19 19 C 1.53000 * 109.46959 * 179.97438 * 17 16 14 20 20 C 1.52998 * 109.47090 * 299.99924 * 17 16 14 21 21 C 1.53783 * 87.08349 * 334.56836 * 10 9 7 22 22 N 1.37654 * 107.52726 * 180.19352 * 3 2 1 23 23 C 1.35527 * 108.64821 * 359.62822 * 22 3 2 24 24 C 1.50702 * 125.56249 * 180.18516 * 23 22 3 25 25 O 1.42892 * 109.47462 * 65.25190 * 24 23 22 26 26 Si 1.86302 * 109.46865 * 185.25040 * 24 23 22 27 27 C 1.35448 * 108.87273 * 0.37456 * 23 22 3 28 28 H 1.09003 * 109.47621 * 89.99841 * 1 2 3 29 29 H 1.09001 * 109.47304 * 210.00194 * 1 2 3 30 30 H 1.09003 * 109.46807 * 329.99560 * 1 2 3 31 31 H 0.97001 * 119.99879 * 359.97438 * 6 4 3 32 32 H 1.09007 * 113.61246 * 25.43436 * 9 7 6 33 33 H 1.08996 * 113.69400 * 254.54561 * 9 7 6 34 34 H 1.08993 * 109.46955 * 305.00273 * 12 10 9 35 35 H 1.09000 * 109.47050 * 65.00102 * 12 10 9 36 36 H 0.97010 * 119.99909 * 359.97438 * 13 12 10 37 37 H 1.09000 * 109.47197 * 59.99713 * 18 17 16 38 38 H 1.08996 * 109.47281 * 180.02562 * 18 17 16 39 39 H 1.09001 * 109.47069 * 300.00300 * 18 17 16 40 40 H 1.09002 * 109.46883 * 60.00419 * 19 17 16 41 41 H 1.08996 * 109.46747 * 180.02562 * 19 17 16 42 42 H 1.09000 * 109.47162 * 300.00191 * 19 17 16 43 43 H 1.08999 * 109.47177 * 60.00257 * 20 17 16 44 44 H 1.08997 * 109.46837 * 180.02562 * 20 17 16 45 45 H 1.08998 * 109.46750 * 299.99588 * 20 17 16 46 46 H 1.08996 * 113.61199 * 139.97325 * 21 10 9 47 47 H 1.08996 * 113.61879 * 270.88830 * 21 10 9 48 48 H 0.97003 * 125.67241 * 179.74163 * 22 3 2 49 49 H 1.08996 * 109.47359 * 305.24717 * 24 23 22 50 50 H 0.96704 * 114.00282 * 59.99819 * 25 24 23 51 51 H 1.48502 * 110.00238 * 179.97438 * 26 24 23 52 52 H 1.48503 * 110.00193 * 301.31477 * 26 24 23 53 53 H 1.08003 * 126.07192 * 179.78517 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3263 1.1089 0.0000 4 6 1.8899 2.5092 -0.0014 5 8 0.7027 2.7765 -0.0032 6 7 2.8038 3.4998 -0.0007 7 6 2.3680 4.8984 -0.0026 8 1 1.3636 5.0305 0.3999 9 6 3.4028 5.8670 0.5938 10 6 3.0222 6.8428 -0.5321 11 1 2.1977 7.5073 -0.2738 12 6 4.2188 7.5854 -1.1302 13 7 3.7445 8.5713 -2.1045 14 6 4.6280 9.3475 -2.7625 15 8 5.8182 9.2300 -2.5473 16 8 4.1921 10.2539 -3.6575 17 6 5.1999 11.0557 -4.3282 18 6 6.1498 10.1387 -5.1012 19 6 4.5195 12.0209 -5.3009 20 6 5.9924 11.8519 -3.2895 21 6 2.5915 5.6116 -1.3467 22 7 3.6283 0.6623 -0.0044 23 6 3.6217 -0.6929 0.0012 24 6 4.8433 -1.5754 0.0029 25 8 5.5617 -1.3921 1.2245 26 14 4.3221 -3.3575 -0.1496 27 6 2.3379 -1.1248 0.0008 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5139 31 1 3.7501 3.2866 0.0011 32 1 4.4287 5.5041 0.5290 33 1 3.1433 6.2266 1.5895 34 1 4.7651 8.0935 -0.3356 35 1 4.8779 6.8726 -1.6260 36 1 2.7943 8.6648 -2.2766 37 1 5.5853 9.5714 -5.8411 38 1 6.9067 10.7405 -5.6042 39 1 6.6345 9.4507 -4.4085 40 1 3.8425 12.6743 -4.7505 41 1 5.2761 12.6224 -5.8046 42 1 3.9552 11.4533 -6.0408 43 1 6.4772 11.1640 -2.5968 44 1 6.7487 12.4541 -3.7930 45 1 5.3156 12.5052 -2.7389 46 1 1.6756 5.7642 -1.9175 47 1 3.3954 5.1788 -1.9420 48 1 4.4190 1.2242 -0.0090 49 1 5.4838 -1.3109 -0.8384 50 1 5.0518 -1.6091 2.0170 51 1 5.5178 -4.2382 -0.1497 52 1 3.4227 -3.7217 0.9746 53 1 2.0135 -2.1549 0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_13940406.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:55:00 Heat of formation + Delta-G solvation = -88.594241 kcal Electronic energy + Delta-G solvation = -32777.499592 eV Core-core repulsion = 28231.098745 eV Total energy + Delta-G solvation = -4546.400847 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.61779 -41.85438 -40.98733 -39.50775 -38.29703 -37.84307 -36.00040 -35.09854 -34.42885 -33.42011 -31.65172 -29.14675 -28.39208 -28.32377 -28.19857 -26.92403 -26.73705 -24.32884 -23.09259 -22.19148 -21.60980 -21.40006 -20.90539 -20.19177 -19.49045 -19.11115 -18.14620 -17.81922 -17.36450 -17.28573 -16.75156 -16.48012 -16.39383 -16.07147 -15.93871 -15.57091 -15.52275 -15.36267 -15.07528 -14.91121 -14.52002 -14.44912 -14.35387 -13.90171 -13.63088 -13.55742 -13.50448 -13.45283 -13.35567 -13.19846 -13.03052 -13.00007 -12.93034 -12.88879 -12.52894 -12.41132 -12.28562 -12.21000 -11.86079 -11.76458 -11.48513 -11.41328 -11.16878 -11.10865 -10.81101 -10.26232 -10.17347 -9.83497 -9.21059 -4.84243 0.29162 1.15085 1.21771 1.52113 1.68667 1.72904 1.89318 2.04081 2.22241 2.23810 3.09539 3.34491 3.39353 3.54787 3.56429 3.69828 3.72169 3.75112 3.77380 3.83217 3.92245 4.12122 4.17137 4.22697 4.37661 4.48530 4.49179 4.58892 4.59859 4.68350 4.70685 4.71764 4.74126 4.77948 4.79365 4.81720 4.84934 4.85313 4.90900 4.95718 5.02375 5.05864 5.14388 5.16859 5.24546 5.24690 5.33200 5.36011 5.49177 5.56956 5.63693 5.84718 6.29994 6.36128 6.39340 6.47464 7.06576 7.30886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.086 4.086 3 C -0.070 4.070 4 C 0.588 3.412 5 O -0.562 6.562 6 N -0.709 5.709 7 C 0.118 3.882 8 H 0.104 0.896 9 C -0.124 4.124 10 C -0.108 4.108 11 H 0.115 0.885 12 C 0.152 3.848 13 N -0.700 5.700 14 C 0.641 3.359 15 O -0.595 6.595 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.144 4.144 22 N -0.513 5.513 23 C 0.037 3.963 24 C -0.062 4.062 25 O -0.548 6.548 26 Si 0.792 3.208 27 C -0.208 4.208 28 H 0.070 0.930 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.068 0.932 36 H 0.417 0.583 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.086 0.914 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.089 0.911 48 H 0.427 0.573 49 H 0.135 0.865 50 H 0.389 0.611 51 H -0.298 1.298 52 H -0.282 1.282 53 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.760 -0.167 -1.732 1.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.183 4.183 4 C 0.377 3.623 5 O -0.441 6.441 6 N -0.359 5.359 7 C 0.013 3.987 8 H 0.122 0.878 9 C -0.163 4.163 10 C -0.127 4.127 11 H 0.133 0.867 12 C 0.030 3.970 13 N -0.360 5.360 14 C 0.395 3.605 15 O -0.487 6.487 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.183 4.183 22 N -0.111 5.111 23 C -0.082 4.082 24 C -0.171 4.171 25 O -0.356 6.356 26 Si 0.695 3.305 27 C -0.232 4.232 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.244 0.756 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.108 0.892 48 H 0.267 0.733 49 H 0.152 0.848 50 H 0.239 0.761 51 H -0.225 1.225 52 H -0.208 1.208 53 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 1.116 -0.400 -1.709 2.080 hybrid contribution 0.589 0.670 1.111 1.424 sum 1.705 0.270 -0.599 1.827 Atomic orbital electron populations 1.20335 0.89182 1.02743 1.02467 1.20174 0.96321 0.91316 1.01711 1.20184 0.84451 0.93255 1.20444 1.17223 0.85716 0.83732 0.75649 1.90815 1.17552 1.83757 1.51940 1.45781 1.09462 1.05870 1.74834 1.22558 0.99907 0.78399 0.97817 0.87790 1.23312 0.99810 0.94238 0.98892 1.22536 0.97927 0.95318 0.96955 0.86651 1.21369 0.96332 0.89288 0.90029 1.44756 1.09959 1.38330 1.42979 1.18377 0.84565 0.79009 0.78596 1.90906 1.16143 1.72448 1.69165 1.86312 1.41802 1.48028 1.52376 1.22354 0.86826 0.89802 0.91987 1.22469 0.99977 1.00692 1.00538 1.21892 1.01970 0.97853 0.97781 1.22469 1.01005 1.00535 0.99674 1.23571 1.02445 0.95525 0.96710 1.41819 1.06823 1.06712 1.55696 1.21195 0.96934 0.83367 1.06750 1.25048 0.92542 1.09399 0.90122 1.86579 1.43218 1.89562 1.16257 0.93300 0.78448 0.70122 0.88646 1.20833 0.90954 0.99532 1.11904 0.91147 0.90437 0.92094 0.75619 0.87877 0.89272 0.91198 0.91384 0.74680 0.91991 0.89465 0.91770 0.91189 0.88306 0.91222 0.91757 0.89471 0.91954 0.91011 0.89220 0.73288 0.84770 0.76071 1.22546 1.20781 0.81853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 9.83 71.24 0.70 0.30 16 2 C -0.09 -0.37 6.21 -19.56 -0.12 -0.50 16 3 C -0.07 -0.22 7.06 40.35 0.28 0.07 16 4 C 0.59 2.87 7.79 86.44 0.67 3.54 16 5 O -0.56 -6.91 14.40 -4.34 -0.06 -6.97 16 6 N -0.71 1.78 5.35 -444.00 -2.38 -0.60 16 7 C 0.12 -0.41 4.24 45.52 0.19 -0.21 16 8 H 0.10 0.06 7.46 -2.39 -0.02 0.05 16 9 C -0.12 0.99 7.39 31.12 0.23 1.22 16 10 C -0.11 0.81 3.76 -10.26 -0.04 0.77 16 11 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 12 C 0.15 -0.53 5.51 86.38 0.48 -0.06 16 13 N -0.70 0.44 5.56 -590.85 -3.28 -2.85 16 14 C 0.64 3.99 8.06 129.79 1.05 5.04 16 15 O -0.60 -6.82 11.88 19.79 0.24 -6.59 16 16 O -0.37 -2.01 9.94 -55.48 -0.55 -2.56 16 17 C 0.13 0.37 1.13 -10.79 -0.01 0.36 16 18 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 19 C -0.14 0.28 8.85 71.98 0.64 0.92 16 20 C -0.18 -0.56 8.37 71.98 0.60 0.05 16 21 C -0.14 0.73 7.43 31.12 0.23 0.96 16 22 N -0.51 1.31 5.99 -171.94 -1.03 0.28 16 23 C 0.04 -0.08 6.46 41.34 0.27 0.19 16 24 C -0.06 0.29 3.08 71.24 0.22 0.51 16 25 O -0.55 1.02 12.88 -148.98 -1.92 -0.89 16 26 Si 0.79 -3.77 30.56 68.60 2.10 -1.68 16 27 C -0.21 -0.01 9.27 22.01 0.20 0.19 16 28 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 29 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 30 H 0.06 0.52 6.49 -2.39 -0.02 0.51 16 31 H 0.41 -3.29 7.86 -92.71 -0.73 -4.01 16 32 H 0.10 -1.04 8.08 -2.38 -0.02 -1.06 16 33 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 34 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.07 -0.15 7.84 -2.39 -0.02 -0.17 16 36 H 0.42 -1.93 8.58 -92.70 -0.80 -2.72 16 37 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 38 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 39 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 40 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 41 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 42 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 43 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 44 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.09 -0.45 7.90 -2.39 -0.02 -0.47 16 48 H 0.43 -3.33 8.19 -92.71 -0.76 -4.08 16 49 H 0.13 -0.99 7.96 -2.39 -0.02 -1.01 16 50 H 0.39 -2.49 8.70 -74.05 -0.64 -3.13 16 51 H -0.30 -0.75 7.11 99.48 0.71 -0.04 16 52 H -0.28 0.06 7.11 99.48 0.71 0.77 16 53 H 0.16 -0.59 6.19 -2.91 -0.02 -0.61 16 Total: 0.00 -23.43 426.43 -2.62 -26.04 By element: Atomic # 1 Polarization: -15.66 SS G_CDS: -1.92 Total: -17.58 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: 6.19 Total: 13.39 kcal Atomic # 7 Polarization: 3.52 SS G_CDS: -6.69 Total: -3.17 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -2.30 Total: -17.01 kcal Atomic # 14 Polarization: -3.77 SS G_CDS: 2.10 Total: -1.68 kcal Total: -23.43 -2.62 -26.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_13940406.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.550 kcal (2) G-P(sol) polarization free energy of solvation -23.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds