Wall clock time and date at job start Sat Mar 6 2021 19:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47465 * 2 1 4 4 C 1.53002 * 109.47052 * 239.99853 * 2 1 3 5 5 O 1.45208 * 109.47491 * 120.00259 * 2 1 3 6 6 C 1.34629 * 116.99728 * 59.99406 * 5 2 1 7 7 O 1.21518 * 120.00519 * 0.02562 * 6 5 2 8 8 N 1.34775 * 119.99954 * 180.02562 * 6 5 2 9 9 C 1.46504 * 120.00207 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46983 * 179.97438 * 9 8 6 11 11 H 1.09002 * 112.85017 * 314.66585 * 10 9 8 12 12 C 1.53786 * 113.61503 * 85.86203 * 10 9 8 13 13 C 1.54049 * 86.98426 * 140.01654 * 12 10 9 14 14 H 1.08996 * 113.68970 * 89.12734 * 13 12 10 15 15 N 1.46497 * 113.61947 * 220.02008 * 13 12 10 16 16 C 1.34773 * 120.00221 * 252.49496 * 15 13 12 17 17 O 1.21278 * 119.99816 * 0.02562 * 16 15 13 18 18 C 1.50703 * 120.00031 * 179.97438 * 16 15 13 19 19 C 1.50696 * 109.47192 * 180.02562 * 18 16 15 20 20 C 1.34857 * 125.89344 * 85.02266 * 19 18 16 21 21 C 1.40891 * 107.41908 * 180.02562 * 20 19 18 22 22 C 1.34849 * 107.41783 * 0.02562 * 21 20 19 23 23 C 1.50699 * 125.88956 * 179.97438 * 22 21 20 24 24 O 1.42902 * 109.47104 * 245.02267 * 23 22 21 25 25 Si 1.86296 * 109.47342 * 5.02546 * 23 22 21 26 26 N 1.36343 * 108.21751 * 359.73798 * 22 21 20 27 27 C 1.53781 * 113.61337 * 183.46996 * 10 9 8 28 28 H 1.09005 * 109.47009 * 300.00279 * 1 2 3 29 29 H 1.09002 * 109.47213 * 59.99703 * 1 2 3 30 30 H 1.08998 * 109.47525 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47286 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47147 * 300.00337 * 3 2 1 33 33 H 1.08996 * 109.47015 * 59.99983 * 3 2 1 34 34 H 1.09005 * 109.47378 * 300.00261 * 4 2 1 35 35 H 1.09002 * 109.46749 * 60.00160 * 4 2 1 36 36 H 1.09005 * 109.47539 * 179.97438 * 4 2 1 37 37 H 0.96999 * 120.00146 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47232 * 59.99775 * 9 8 6 39 39 H 1.08997 * 109.47041 * 299.99591 * 9 8 6 40 40 H 1.08992 * 113.61675 * 254.61398 * 12 10 9 41 41 H 1.09000 * 113.60973 * 25.51686 * 12 10 9 42 42 H 0.97001 * 119.99862 * 72.50056 * 15 13 12 43 43 H 1.09003 * 109.47320 * 300.00554 * 18 16 15 44 44 H 1.08995 * 109.47245 * 60.00423 * 18 16 15 45 45 H 1.07995 * 126.28671 * 0.02654 * 20 19 18 46 46 H 1.07997 * 126.28957 * 180.02562 * 21 20 19 47 47 H 1.09001 * 109.47190 * 125.02955 * 23 22 21 48 48 H 0.96703 * 113.99394 * 60.00249 * 24 23 22 49 49 H 1.48503 * 109.99896 * 58.67651 * 25 23 22 50 50 H 1.48500 * 110.00313 * 180.02562 * 25 23 22 51 51 H 0.97001 * 125.63721 * 180.26418 * 26 22 21 52 52 H 1.08999 * 113.61567 * 334.48261 * 27 10 9 53 53 H 1.09000 * 113.61379 * 105.30384 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0141 -0.6846 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9515 -2.5097 0.5036 8 7 2.0673 -2.6655 2.4170 9 6 1.6740 -4.0669 2.5830 10 6 2.2742 -4.6149 3.8794 11 1 3.3225 -4.3454 4.0075 12 6 1.4111 -4.3400 5.1222 13 6 1.7748 -5.7623 5.5891 14 1 2.6863 -5.8080 6.1849 15 7 0.6567 -6.4821 6.2038 16 6 0.6398 -6.6902 7.5353 17 8 1.5500 -6.2812 8.2246 18 6 -0.5107 -7.4302 8.1678 19 6 -0.2888 -7.5269 9.6552 20 6 -0.6191 -6.5892 10.5664 21 6 -0.2393 -7.0786 11.8318 22 6 0.3091 -8.2964 11.6457 23 6 0.8581 -9.1925 12.7258 24 8 2.2667 -9.3499 12.5439 25 14 0.5286 -8.4293 14.3930 26 7 0.2765 -8.5793 10.3123 27 6 1.9900 -6.1091 4.1064 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6766 -1.7490 -1.2493 35 1 1.6766 -0.2074 -2.1392 36 1 3.1300 -0.7209 -1.2495 37 1 2.6269 -2.2367 3.0832 38 1 2.0411 -4.6498 1.7383 39 1 0.5872 -4.1365 2.6276 40 1 1.8078 -3.5534 5.7640 41 1 0.3521 -4.2113 4.8985 42 1 -0.0714 -6.8090 5.6526 43 1 -1.4391 -6.8930 7.9733 44 1 -0.5752 -8.4323 7.7438 45 1 -1.0885 -5.6381 10.3634 46 1 -0.3645 -6.5716 12.7771 47 1 0.3735 -10.1673 12.6702 48 1 2.7631 -8.5209 12.5813 49 1 -0.9310 -8.2310 14.5813 50 1 1.0657 -9.3032 15.4668 51 1 0.6034 -9.3937 9.8992 52 1 1.0889 -6.4632 3.6056 53 1 2.8534 -6.7499 3.9273 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_14644196.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:55:04 Heat of formation + Delta-G solvation = -87.368482 kcal Electronic energy + Delta-G solvation = -32228.923555 eV Core-core repulsion = 27682.575860 eV Total energy + Delta-G solvation = -4546.347694 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.32712 -41.83644 -41.04747 -39.57567 -38.26865 -37.69179 -35.92824 -34.99334 -34.23270 -32.94268 -31.92218 -29.69597 -28.66767 -28.37720 -28.30914 -26.68770 -25.41748 -24.03877 -22.88108 -21.75447 -21.39482 -21.34478 -21.04358 -20.44087 -19.12740 -18.92459 -18.04468 -17.80912 -17.37589 -17.31193 -16.84786 -16.41513 -16.34023 -16.14324 -15.94823 -15.53747 -15.47753 -15.23428 -14.98619 -14.71000 -14.59952 -14.43445 -14.19043 -14.11163 -13.90308 -13.65958 -13.43116 -13.38145 -13.29810 -13.15604 -12.98289 -12.91458 -12.87552 -12.73091 -12.50418 -12.37530 -12.18254 -12.09013 -11.99488 -11.70823 -11.43778 -11.39296 -11.13012 -10.90587 -10.63633 -10.21834 -9.98829 -9.79396 -8.95865 -4.93440 1.11317 1.17703 1.28946 1.63463 1.68760 1.74957 1.90203 1.91938 2.34745 2.53399 3.12033 3.46297 3.50720 3.60326 3.69416 3.73495 3.75913 3.78630 3.81415 3.83167 3.93576 4.03916 4.21695 4.23889 4.36906 4.42319 4.49579 4.51406 4.60249 4.62262 4.62925 4.73375 4.75454 4.77541 4.80372 4.82669 4.84211 4.86561 4.88305 5.00739 5.08586 5.09329 5.21620 5.25943 5.25982 5.29369 5.30863 5.37719 5.58602 5.62286 6.00460 6.13974 6.38178 6.56077 6.64933 6.68057 7.29495 7.32867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.152 3.848 10 C -0.111 4.111 11 H 0.110 0.890 12 C -0.144 4.144 13 C 0.118 3.882 14 H 0.095 0.905 15 N -0.709 5.709 16 C 0.512 3.488 17 O -0.575 6.575 18 C -0.069 4.069 19 C 0.032 3.968 20 C -0.201 4.201 21 C -0.201 4.201 22 C -0.022 4.022 23 C -0.054 4.054 24 O -0.561 6.561 25 Si 0.801 3.199 26 N -0.538 5.538 27 C -0.122 4.122 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.092 0.908 42 H 0.418 0.582 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.140 0.860 46 H 0.154 0.846 47 H 0.106 0.894 48 H 0.395 0.605 49 H -0.285 1.285 50 H -0.293 1.293 51 H 0.418 0.582 52 H 0.106 0.894 53 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.897 1.340 -2.712 3.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.395 3.605 7 O -0.486 6.486 8 N -0.360 5.360 9 C 0.030 3.970 10 C -0.130 4.130 11 H 0.128 0.872 12 C -0.182 4.182 13 C 0.012 3.988 14 H 0.113 0.887 15 N -0.361 5.361 16 C 0.299 3.701 17 O -0.454 6.454 18 C -0.109 4.109 19 C -0.082 4.082 20 C -0.225 4.225 21 C -0.226 4.226 22 C -0.136 4.136 23 C -0.164 4.164 24 O -0.369 6.369 25 Si 0.705 3.295 26 N -0.133 5.133 27 C -0.161 4.161 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.252 0.748 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.255 0.745 43 H 0.159 0.841 44 H 0.144 0.856 45 H 0.158 0.842 46 H 0.171 0.829 47 H 0.124 0.876 48 H 0.245 0.755 49 H -0.211 1.211 50 H -0.220 1.220 51 H 0.255 0.745 52 H 0.125 0.875 53 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.103 0.572 -2.035 2.384 hybrid contribution -0.105 -0.721 -0.677 0.994 sum -1.207 -0.149 -2.711 2.972 Atomic orbital electron populations 1.22471 0.94008 1.03713 1.03499 1.22345 0.94487 0.92553 0.81532 1.21896 1.02448 0.90960 1.04235 1.22477 1.01623 1.02274 0.97352 1.86312 1.71568 1.23426 1.47273 1.18375 0.78829 0.80775 0.82563 1.90905 1.42354 1.71010 1.44367 1.44768 1.55258 1.13012 1.23010 1.21380 0.99835 0.78047 0.97746 1.22547 1.00906 0.97001 0.92580 0.87154 1.23602 1.00928 0.97124 0.96582 1.22470 0.90539 0.92292 0.93460 0.88742 1.45884 1.25131 1.57916 1.07150 1.20987 0.87520 0.79115 0.82523 1.90745 1.39456 1.52183 1.63010 1.20261 0.98559 1.03945 0.88150 1.19942 1.04228 0.89987 0.94027 1.20849 1.08790 1.00330 0.92536 1.20925 1.06945 0.95637 0.99091 1.20997 1.09028 0.98583 0.84974 1.24975 0.83726 1.01913 1.05767 1.86432 1.16858 1.37704 1.95870 0.92919 0.79851 0.85944 0.70769 1.41902 1.47861 1.17096 1.06463 1.23290 1.04038 0.95188 0.93585 0.91978 0.89473 0.91718 0.91215 0.88313 0.91213 0.91724 0.89475 0.91975 0.74759 0.91300 0.91183 0.91495 0.88904 0.74488 0.84081 0.85553 0.84170 0.82895 0.87607 0.75509 1.21127 1.22038 0.74463 0.87522 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.29 8.85 71.98 0.64 0.93 16 4 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 5 O -0.37 -1.97 9.94 -55.38 -0.55 -2.52 16 6 C 0.64 3.88 8.06 129.79 1.05 4.92 16 7 O -0.60 -6.66 11.88 19.78 0.24 -6.43 16 8 N -0.70 0.53 5.56 -590.85 -3.29 -2.76 16 9 C 0.15 -0.58 5.50 86.38 0.47 -0.11 16 10 C -0.11 0.85 3.75 -10.26 -0.04 0.81 16 11 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 12 C -0.14 0.82 7.45 31.21 0.23 1.05 16 13 C 0.12 -0.54 4.25 45.61 0.19 -0.34 16 14 H 0.09 0.06 7.46 -2.39 -0.02 0.04 16 15 N -0.71 4.16 5.36 -439.62 -2.35 1.81 16 16 C 0.51 0.12 7.82 87.66 0.69 0.80 16 17 O -0.58 -6.17 15.63 -3.02 -0.05 -6.22 16 18 C -0.07 0.35 6.24 29.10 0.18 0.53 16 19 C 0.03 0.08 5.66 41.08 0.23 0.31 16 20 C -0.20 -0.99 10.77 22.14 0.24 -0.75 16 21 C -0.20 -0.88 9.37 22.14 0.21 -0.67 16 22 C -0.02 -0.08 6.50 41.08 0.27 0.18 16 23 C -0.05 -0.09 3.08 71.24 0.22 0.13 16 24 O -0.56 -1.58 12.88 -148.98 -1.92 -3.50 16 25 Si 0.80 -0.27 30.60 68.60 2.10 1.82 16 26 N -0.54 -1.41 6.07 -171.12 -1.04 -2.45 16 27 C -0.12 1.08 7.39 31.12 0.23 1.31 16 28 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 29 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 31 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 32 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 33 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 34 H 0.06 0.52 5.88 -2.38 -0.01 0.51 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.15 8.14 -2.38 -0.02 0.13 16 37 H 0.42 -1.90 8.58 -92.71 -0.80 -2.70 16 38 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 39 H 0.07 -0.20 7.88 -2.39 -0.02 -0.21 16 40 H 0.07 -0.22 8.14 -2.39 -0.02 -0.24 16 41 H 0.09 -0.57 7.92 -2.39 -0.02 -0.59 16 42 H 0.42 -5.13 8.73 -92.71 -0.81 -5.94 16 43 H 0.14 -1.39 8.14 -2.39 -0.02 -1.41 16 44 H 0.13 -1.32 8.14 -2.39 -0.02 -1.34 16 45 H 0.14 0.40 8.06 -2.91 -0.02 0.38 16 46 H 0.15 0.07 6.24 -2.91 -0.02 0.06 16 47 H 0.11 0.18 7.96 -2.39 -0.02 0.16 16 48 H 0.39 -1.38 8.70 -74.06 -0.64 -2.02 16 49 H -0.28 -1.31 7.11 99.48 0.71 -0.61 16 50 H -0.29 -1.70 7.11 99.48 0.71 -1.00 16 51 H 0.42 -0.31 8.96 -92.71 -0.83 -1.14 16 52 H 0.11 -1.21 8.08 -2.39 -0.02 -1.23 16 53 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 Total: 0.00 -27.17 430.86 -2.94 -30.11 By element: Atomic # 1 Polarization: -17.38 SS G_CDS: -2.08 Total: -19.46 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 6.00 Total: 9.59 kcal Atomic # 7 Polarization: 3.28 SS G_CDS: -6.68 Total: -3.40 kcal Atomic # 8 Polarization: -16.39 SS G_CDS: -2.28 Total: -18.67 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: 2.10 Total: 1.82 kcal Total: -27.17 -2.94 -30.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_14644196.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.256 kcal (2) G-P(sol) polarization free energy of solvation -27.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds