Wall clock time and date at job start Sat Mar 6 2021 19:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47000 * 2 1 4 4 C 1.53001 * 109.46847 * 240.00052 * 2 1 3 5 5 O 1.45201 * 109.46629 * 119.99965 * 2 1 3 6 6 C 1.34634 * 116.99914 * 60.00426 * 5 2 1 7 7 O 1.21505 * 120.00337 * 359.97438 * 6 5 2 8 8 N 1.34773 * 119.99680 * 179.97438 * 6 5 2 9 9 C 1.46504 * 120.00147 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47445 * 179.97438 * 9 8 6 11 11 H 1.09004 * 112.84883 * 43.80461 * 10 9 8 12 12 C 1.53780 * 113.61634 * 175.00161 * 10 9 8 13 13 C 1.53774 * 87.08295 * 140.06807 * 12 10 9 14 14 H 1.09003 * 113.61897 * 89.19752 * 13 12 10 15 15 N 1.46504 * 113.61210 * 220.02079 * 13 12 10 16 16 C 1.34784 * 119.99571 * 204.99638 * 15 13 12 17 17 O 1.21273 * 120.00206 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99514 * 179.97438 * 16 15 13 19 19 C 1.53543 * 109.81967 * 81.79472 * 18 16 15 20 20 C 1.53038 * 108.56112 * 180.48577 * 19 18 16 21 21 C 1.50205 * 110.31925 * 310.42653 * 20 19 18 22 22 C 1.50695 * 118.55119 * 200.05017 * 21 20 19 23 23 O 1.42903 * 109.46798 * 70.00248 * 22 21 20 24 24 Si 1.86298 * 109.47516 * 190.00229 * 22 21 20 25 25 C 1.31016 * 122.87328 * 19.78259 * 21 20 19 26 26 N 1.38921 * 121.93255 * 0.13819 * 25 21 20 27 27 C 1.53776 * 113.69416 * 272.53766 * 10 9 8 28 28 H 1.08997 * 109.47232 * 300.00036 * 1 2 3 29 29 H 1.09004 * 109.46568 * 60.00148 * 1 2 3 30 30 H 1.08997 * 109.46803 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47092 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47144 * 300.00030 * 3 2 1 33 33 H 1.08997 * 109.47157 * 59.99918 * 3 2 1 34 34 H 1.08994 * 109.47277 * 299.99686 * 4 2 1 35 35 H 1.08998 * 109.47268 * 60.00540 * 4 2 1 36 36 H 1.09009 * 109.46330 * 180.02562 * 4 2 1 37 37 H 0.97001 * 120.00555 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.47052 * 59.99803 * 9 8 6 39 39 H 1.08996 * 109.47168 * 300.00128 * 9 8 6 40 40 H 1.08996 * 113.61146 * 25.51248 * 12 10 9 41 41 H 1.09002 * 113.68860 * 254.62768 * 12 10 9 42 42 H 0.96993 * 120.00040 * 24.99548 * 15 13 12 43 43 H 1.08996 * 109.81652 * 320.86606 * 18 16 15 44 44 H 1.09000 * 109.62438 * 300.20909 * 19 18 16 45 45 H 1.09005 * 109.62043 * 60.58051 * 19 18 16 46 46 H 1.08997 * 109.33127 * 70.68814 * 20 19 18 47 47 H 1.09004 * 109.32969 * 190.34236 * 20 19 18 48 48 H 1.09003 * 109.47100 * 310.00423 * 22 21 20 49 49 H 0.96697 * 113.99955 * 60.00320 * 23 22 21 50 50 H 1.48501 * 109.99732 * 58.68049 * 24 22 21 51 51 H 1.48498 * 110.00083 * 180.02562 * 24 22 21 52 52 H 1.08005 * 118.99514 * 179.86340 * 25 21 20 53 53 H 0.97001 * 120.56264 * 193.07107 * 26 25 21 54 54 H 1.08997 * 113.61906 * 105.45574 * 27 10 9 55 55 H 1.09003 * 113.61315 * 334.55493 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9510 -2.5094 0.5040 8 7 2.0679 -2.6657 2.4166 9 6 1.6739 -4.0668 2.5832 10 6 2.2750 -4.6152 3.8788 11 1 2.1815 -3.9224 4.7152 12 6 1.8214 -6.0466 4.2109 13 6 3.2661 -6.3152 4.6641 14 1 3.4433 -6.0885 5.7154 15 7 3.7675 -7.6354 4.2743 16 6 4.7566 -8.2164 4.9820 17 8 5.2312 -7.6465 5.9415 18 6 5.2720 -9.5747 4.5814 19 6 6.2863 -9.4302 3.4378 20 6 6.7810 -10.8246 3.0463 21 6 7.2069 -11.5887 4.2673 22 6 8.1306 -12.7668 4.0938 23 8 9.4277 -12.3030 3.7137 24 14 8.2518 -13.7028 5.7000 25 6 6.8146 -11.2728 5.4768 26 7 5.9662 -10.1994 5.7171 27 6 3.6920 -5.1879 3.7087 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7489 -1.2493 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2490 37 1 2.6281 -2.2370 3.0826 38 1 2.0396 -4.6500 1.7380 39 1 0.5871 -4.1357 2.6288 40 1 1.5236 -6.6243 3.3359 41 1 1.0931 -6.0985 5.0203 42 1 3.3877 -8.0914 3.5071 43 1 4.4422 -10.2057 4.2631 44 1 5.8067 -8.9579 2.5805 45 1 7.1269 -8.8203 3.7690 46 1 5.9780 -11.3646 2.5446 47 1 7.6298 -10.7293 2.3691 48 1 7.7383 -13.4249 3.3185 49 1 9.8383 -11.7110 4.3586 50 1 6.9046 -14.1630 6.1225 51 1 9.1604 -14.8667 5.5422 52 1 7.1579 -11.8674 6.3105 53 1 5.8371 -9.8649 6.6184 54 1 4.4741 -4.5452 4.1129 55 1 3.9057 -5.5309 2.6964 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_15413834.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:55:07 Heat of formation + Delta-G solvation = -109.887944 kcal Electronic energy + Delta-G solvation = -33328.896794 eV Core-core repulsion = 28754.261104 eV Total energy + Delta-G solvation = -4574.635690 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.219 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.86227 -41.53412 -40.31704 -39.21804 -38.27961 -37.31396 -35.95941 -35.04212 -34.33247 -33.18538 -32.80852 -29.17538 -28.38124 -28.31610 -27.45502 -26.69985 -25.45773 -24.32545 -23.49340 -22.75919 -21.65746 -21.38229 -20.54829 -19.37735 -19.11718 -18.98168 -17.99830 -17.79776 -17.37858 -17.30364 -16.75950 -16.59966 -16.23374 -15.96807 -15.84627 -15.65874 -15.56948 -15.46547 -15.24355 -15.08107 -14.74310 -14.44600 -14.37985 -14.12949 -13.90837 -13.47647 -13.42000 -13.34662 -13.16863 -13.10600 -13.02396 -12.92055 -12.91637 -12.87839 -12.51477 -12.39400 -12.21553 -12.19857 -11.90575 -11.84556 -11.72077 -11.45126 -11.39877 -11.28204 -11.13417 -10.83502 -10.22640 -10.17528 -10.07053 -8.44668 -4.98538 1.16895 1.35835 1.40917 1.46995 1.63633 1.74674 1.94538 2.00627 2.66247 3.11704 3.43507 3.52819 3.59749 3.72510 3.73222 3.76206 3.77242 3.78296 3.83853 3.90014 3.93173 4.06384 4.20186 4.33927 4.40766 4.45427 4.50887 4.58278 4.59839 4.62300 4.63514 4.71970 4.75029 4.76597 4.78907 4.81675 4.83480 4.86174 4.86990 4.99224 5.03923 5.06906 5.08753 5.19119 5.21011 5.25569 5.27825 5.31274 5.36411 5.55336 5.58484 5.59872 6.26068 6.37885 6.47529 6.83671 6.92099 7.12129 7.32621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.151 3.849 10 C -0.110 4.110 11 H 0.112 0.888 12 C -0.123 4.123 13 C 0.117 3.883 14 H 0.101 0.899 15 N -0.702 5.702 16 C 0.515 3.485 17 O -0.572 6.572 18 C 0.136 3.864 19 C -0.118 4.118 20 C -0.054 4.054 21 C -0.293 4.293 22 C -0.048 4.048 23 O -0.565 6.565 24 Si 0.755 3.245 25 C 0.146 3.854 26 N -0.737 5.737 27 C -0.144 4.144 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.061 0.939 37 H 0.416 0.584 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.106 0.894 41 H 0.087 0.913 42 H 0.418 0.582 43 H 0.108 0.892 44 H 0.096 0.904 45 H 0.059 0.941 46 H 0.070 0.930 47 H 0.069 0.931 48 H 0.093 0.907 49 H 0.391 0.609 50 H -0.289 1.289 51 H -0.307 1.307 52 H 0.148 0.852 53 H 0.409 0.591 54 H 0.068 0.932 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.129 2.784 0.990 3.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.394 3.606 7 O -0.486 6.486 8 N -0.360 5.360 9 C 0.029 3.971 10 C -0.130 4.130 11 H 0.131 0.869 12 C -0.161 4.161 13 C 0.012 3.988 14 H 0.119 0.881 15 N -0.354 5.354 16 C 0.301 3.699 17 O -0.451 6.451 18 C 0.027 3.973 19 C -0.157 4.157 20 C -0.092 4.092 21 C -0.303 4.303 22 C -0.160 4.160 23 O -0.372 6.372 24 Si 0.663 3.337 25 C 0.025 3.975 26 N -0.370 5.370 27 C -0.183 4.183 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.080 0.920 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.124 0.876 41 H 0.106 0.894 42 H 0.255 0.745 43 H 0.125 0.875 44 H 0.115 0.885 45 H 0.078 0.922 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.111 0.889 49 H 0.240 0.760 50 H -0.216 1.216 51 H -0.236 1.236 52 H 0.165 0.835 53 H 0.245 0.755 54 H 0.087 0.913 55 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.481 1.916 0.997 3.290 hybrid contribution -0.186 -0.043 -0.323 0.375 sum -2.667 1.873 0.674 3.328 Atomic orbital electron populations 1.22474 0.94018 1.03713 1.03503 1.22345 0.94476 0.92557 0.81541 1.21893 1.02437 0.90962 1.04239 1.22472 1.01603 1.02272 0.97349 1.86310 1.71580 1.23434 1.47248 1.18379 0.78819 0.80773 0.82594 1.90904 1.42325 1.71032 1.44380 1.44770 1.55155 1.12981 1.23137 1.21386 0.99947 0.78111 0.97626 1.22542 0.96139 0.97206 0.97080 0.86950 1.23302 0.95311 0.94568 1.02950 1.22508 0.95079 0.81557 0.99610 0.88142 1.45859 1.36839 1.19927 1.32734 1.20835 0.79279 0.87532 0.82267 1.90717 1.58958 1.65792 1.29617 1.21115 0.96531 0.90891 0.88753 1.21791 0.98352 0.98288 0.97230 1.19949 1.00563 0.93246 0.95394 1.20936 1.09589 1.04733 0.95084 1.24763 0.83609 0.98415 1.09164 1.86430 1.30266 1.69243 1.51299 0.94257 0.78401 0.80584 0.80489 1.20454 0.91391 0.89102 0.96521 1.44379 1.49592 1.34157 1.08825 1.23570 0.96790 0.97320 1.00621 0.91952 0.89496 0.91729 0.91228 0.88327 0.91199 0.91724 0.89489 0.91993 0.74733 0.91255 0.91256 0.87598 0.89399 0.74477 0.87463 0.88542 0.92183 0.91209 0.91259 0.88918 0.75993 1.21582 1.23585 0.83542 0.75461 0.91336 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 2 C 0.13 0.33 1.13 -10.79 -0.01 0.32 16 3 C -0.14 0.31 8.85 71.98 0.64 0.95 16 4 C -0.18 -0.50 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.87 9.94 -55.43 -0.55 -2.42 16 6 C 0.64 3.67 8.06 129.79 1.05 4.71 16 7 O -0.60 -6.53 11.88 19.83 0.24 -6.29 16 8 N -0.70 0.89 5.56 -590.87 -3.29 -2.39 16 9 C 0.15 -0.67 5.51 86.38 0.48 -0.20 16 10 C -0.11 0.96 3.75 -10.27 -0.04 0.92 16 11 H 0.11 -1.09 8.14 -2.38 -0.02 -1.11 16 12 C -0.12 1.21 7.39 31.12 0.23 1.44 16 13 C 0.12 -0.69 4.24 45.51 0.19 -0.50 16 14 H 0.10 -0.16 7.46 -2.39 -0.02 -0.17 16 15 N -0.70 4.52 5.36 -440.04 -2.36 2.16 16 16 C 0.51 -0.31 7.08 87.66 0.62 0.31 16 17 O -0.57 -4.48 15.70 -3.01 -0.05 -4.53 16 18 C 0.14 -0.44 3.36 44.33 0.15 -0.29 16 19 C -0.12 0.37 5.47 30.79 0.17 0.54 16 20 C -0.05 0.06 5.85 29.71 0.17 0.24 16 21 C -0.29 0.09 5.36 -16.66 -0.09 0.00 16 22 C -0.05 -0.04 2.81 71.23 0.20 0.16 16 23 O -0.56 -1.33 12.88 -148.98 -1.92 -3.25 16 24 Si 0.75 -0.51 29.73 68.60 2.04 1.53 16 25 C 0.15 -0.26 9.62 83.51 0.80 0.55 16 26 N -0.74 0.82 5.47 -329.07 -1.80 -0.98 16 27 C -0.14 0.98 7.43 31.12 0.23 1.21 16 28 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 29 H 0.09 -0.05 8.14 -2.38 -0.02 -0.07 16 30 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 31 H 0.07 -0.17 8.14 -2.39 -0.02 -0.18 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.51 5.88 -2.39 -0.01 0.50 16 35 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 37 H 0.42 -2.17 8.58 -92.71 -0.80 -2.97 16 38 H 0.07 -0.22 7.85 -2.39 -0.02 -0.24 16 39 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 40 H 0.11 -1.27 8.08 -2.39 -0.02 -1.29 16 41 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 42 H 0.42 -5.02 8.73 -92.71 -0.81 -5.83 16 43 H 0.11 -0.72 8.14 -2.39 -0.02 -0.74 16 44 H 0.10 -0.69 8.14 -2.39 -0.02 -0.71 16 45 H 0.06 0.06 8.14 -2.38 -0.02 0.04 16 46 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 47 H 0.07 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.09 0.24 7.96 -2.39 -0.02 0.22 16 49 H 0.39 -2.06 8.70 -74.06 -0.64 -2.70 16 50 H -0.29 -1.15 7.11 99.48 0.71 -0.44 16 51 H -0.31 -2.35 7.11 99.48 0.71 -1.65 16 52 H 0.15 -0.83 4.48 -2.91 -0.01 -0.84 16 53 H 0.41 -0.28 8.12 -92.71 -0.75 -1.03 16 54 H 0.07 -0.31 8.14 -2.39 -0.02 -0.33 16 55 H 0.09 -0.64 7.90 -2.39 -0.02 -0.66 16 Total: 0.00 -23.43 433.28 -3.72 -27.15 By element: Atomic # 1 Polarization: -19.51 SS G_CDS: -2.03 Total: -21.54 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: 5.99 Total: 10.55 kcal Atomic # 7 Polarization: 6.23 SS G_CDS: -7.44 Total: -1.21 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -2.28 Total: -16.49 kcal Atomic # 14 Polarization: -0.51 SS G_CDS: 2.04 Total: 1.53 kcal Total: -23.43 -3.72 -27.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_15413834.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.733 kcal (2) G-P(sol) polarization free energy of solvation -23.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds