Wall clock time and date at job start Sat Mar 6 2021 19:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46804 * 2 1 4 4 C 1.52993 * 109.47374 * 239.99584 * 2 1 3 5 5 O 1.45202 * 109.47014 * 119.99677 * 2 1 3 6 6 C 1.34639 * 117.00138 * 60.00246 * 5 2 1 7 7 O 1.21513 * 119.99659 * 0.02562 * 6 5 2 8 8 N 1.34774 * 120.00039 * 179.97438 * 6 5 2 9 9 C 1.46497 * 119.99932 * 179.97438 * 8 6 5 10 10 C 1.52998 * 109.47203 * 180.02562 * 9 8 6 11 11 H 1.09008 * 112.84868 * 316.19908 * 10 9 8 12 12 C 1.53775 * 113.69017 * 87.47048 * 10 9 8 13 13 C 1.53779 * 87.08438 * 139.99386 * 12 10 9 14 14 H 1.09002 * 113.61731 * 89.11293 * 13 12 10 15 15 N 1.46500 * 113.68825 * 220.00754 * 13 12 10 16 16 C 1.34778 * 119.99919 * 254.05902 * 15 13 12 17 17 O 1.21277 * 119.99902 * 0.02562 * 16 15 13 18 18 C 1.50701 * 119.99998 * 180.02562 * 16 15 13 19 19 C 1.53039 * 109.32924 * 180.86218 * 18 16 15 20 20 C 1.53563 * 108.54928 * 190.16127 * 19 18 16 21 21 N 1.47029 * 107.64749 * 60.97482 * 20 19 18 22 22 C 1.38925 * 118.88306 * 316.32619 * 21 20 19 23 23 C 1.31109 * 121.84816 * 13.29209 * 22 21 20 24 24 C 1.50703 * 118.54547 * 179.61671 * 23 22 21 25 25 O 1.42897 * 109.47258 * 250.01959 * 24 23 22 26 26 Si 1.86296 * 109.47230 * 10.02210 * 24 23 22 27 27 C 1.53777 * 113.61649 * 185.00515 * 10 9 8 28 28 H 1.08997 * 109.47396 * 300.00366 * 1 2 3 29 29 H 1.08996 * 109.46851 * 60.00620 * 1 2 3 30 30 H 1.09005 * 109.46699 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46929 * 179.97438 * 3 2 1 32 32 H 1.08996 * 109.46911 * 299.99344 * 3 2 1 33 33 H 1.08999 * 109.47553 * 60.00199 * 3 2 1 34 34 H 1.08996 * 109.47345 * 299.99892 * 4 2 1 35 35 H 1.09002 * 109.47050 * 60.00450 * 4 2 1 36 36 H 1.09004 * 109.47085 * 180.02562 * 4 2 1 37 37 H 0.97004 * 120.00158 * 0.02562 * 8 6 5 38 38 H 1.09000 * 109.46697 * 60.00384 * 9 8 6 39 39 H 1.08997 * 109.47634 * 300.00373 * 9 8 6 40 40 H 1.08993 * 113.61636 * 25.43750 * 12 10 9 41 41 H 1.09008 * 113.61006 * 254.53993 * 12 10 9 42 42 H 0.96998 * 119.99853 * 74.06469 * 15 13 12 43 43 H 1.08998 * 109.33007 * 300.34932 * 18 16 15 44 44 H 1.08996 * 109.62294 * 309.89279 * 19 18 16 45 45 H 1.08996 * 109.61919 * 70.45171 * 19 18 16 46 46 H 1.09005 * 109.83463 * 301.43058 * 20 19 18 47 47 H 1.08998 * 109.87039 * 180.53694 * 20 19 18 48 48 H 0.96994 * 120.55699 * 136.30139 * 21 20 19 49 49 H 1.08001 * 119.07198 * 193.31335 * 22 21 20 50 50 H 1.09005 * 109.46903 * 130.01993 * 24 23 22 51 51 H 0.96707 * 113.99674 * 60.00381 * 25 24 23 52 52 H 1.48506 * 110.00090 * 58.67950 * 26 24 23 53 53 H 1.48495 * 110.00455 * 180.02562 * 26 24 23 54 54 H 1.08997 * 113.61941 * 105.38293 * 27 10 9 55 55 H 1.09005 * 113.61136 * 334.48457 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9723 1.3385 7 8 0.9517 -2.5097 0.5036 8 7 2.0680 -2.6656 2.4168 9 6 1.6740 -4.0667 2.5834 10 6 2.2741 -4.6147 3.8797 11 1 3.3152 -4.3235 4.0203 12 6 1.3945 -4.3741 5.1178 13 6 1.7846 -5.7903 5.5730 14 1 2.6918 -5.8206 6.1766 15 7 0.6783 -6.5422 6.1704 16 6 0.6386 -6.7375 7.5034 17 8 1.5185 -6.2904 8.2082 18 6 -0.4991 -7.5115 8.1180 19 6 -0.3125 -7.5667 9.6359 20 6 -1.3261 -8.5634 10.2168 21 7 -1.0439 -9.8805 9.6274 22 6 -0.7800 -9.9639 8.2660 23 6 -0.5230 -8.8996 7.5447 24 6 -0.2384 -9.0770 6.0754 25 8 1.1410 -8.8040 5.8211 26 14 -0.6274 -10.8287 5.5745 27 6 2.0210 -6.1169 4.0890 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2075 -2.1391 36 1 3.1301 -0.7217 -1.2488 37 1 2.6276 -2.2367 3.0830 38 1 2.0398 -4.6499 1.7383 39 1 0.5871 -4.1356 2.6291 40 1 0.3349 -4.2662 4.8864 41 1 1.7681 -3.5867 5.7725 42 1 -0.0255 -6.8995 5.6067 43 1 -1.4403 -7.0110 7.8906 44 1 0.7000 -7.8964 9.8685 45 1 -0.4856 -6.5785 10.0621 46 1 -2.3390 -8.2529 9.9601 47 1 -1.2182 -8.6126 11.3003 48 1 -1.0416 -10.6778 10.1798 49 1 -0.7872 -10.9325 7.7883 50 1 -0.8572 -8.3885 5.4998 51 1 1.7511 -9.3803 6.3015 52 1 -2.0514 -11.1353 5.8635 53 1 -0.3503 -11.0168 4.1278 54 1 2.9002 -6.7366 3.9129 55 1 1.1326 -6.4856 3.5761 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_15608500.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:55:11 Heat of formation + Delta-G solvation = -90.665809 kcal Electronic energy + Delta-G solvation = -34726.531080 eV Core-core repulsion = 30152.728925 eV Total energy + Delta-G solvation = -4573.802156 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 368.219 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.87253 -41.54490 -40.21355 -38.89503 -38.24684 -37.48823 -35.90470 -34.95069 -34.11475 -33.14044 -32.62849 -29.06501 -28.39608 -28.32588 -27.23567 -26.63877 -25.95258 -23.94899 -23.19538 -22.75037 -21.50326 -21.33982 -20.49793 -19.26046 -19.15345 -18.79362 -17.89476 -17.78966 -17.40767 -17.33688 -16.97107 -16.43211 -16.18033 -15.96275 -15.80204 -15.64005 -15.53801 -15.38491 -15.06165 -14.83067 -14.62230 -14.45311 -14.37040 -13.98901 -13.79993 -13.43313 -13.39350 -13.32864 -13.17092 -13.07196 -12.94013 -12.89780 -12.86434 -12.63225 -12.50285 -12.38419 -12.17633 -12.09773 -11.91282 -11.75302 -11.64008 -11.42904 -11.37445 -11.33480 -11.14246 -10.61162 -10.23979 -10.18398 -9.63175 -8.40330 -4.93085 1.15160 1.33894 1.43685 1.69142 1.72711 1.89350 2.05702 2.45927 2.70166 3.11204 3.51320 3.62865 3.63830 3.71890 3.75648 3.76952 3.78616 3.86587 3.91922 3.96011 4.06215 4.20301 4.26835 4.38168 4.40024 4.44488 4.50346 4.58508 4.59852 4.61766 4.65837 4.73577 4.73840 4.79063 4.81317 4.81892 4.84895 4.85145 4.87756 4.92566 5.00561 5.09045 5.15470 5.21716 5.24289 5.25275 5.30025 5.32283 5.42015 5.49868 5.56772 5.77377 6.34858 6.36531 6.75978 6.90048 7.00920 7.30820 7.46439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.700 5.700 9 C 0.153 3.847 10 C -0.110 4.110 11 H 0.113 0.887 12 C -0.148 4.148 13 C 0.130 3.870 14 H 0.093 0.907 15 N -0.682 5.682 16 C 0.533 3.467 17 O -0.596 6.596 18 C -0.040 4.040 19 C -0.116 4.116 20 C 0.122 3.878 21 N -0.747 5.747 22 C 0.162 3.838 23 C -0.299 4.299 24 C -0.049 4.049 25 O -0.544 6.544 26 Si 0.757 3.243 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.084 0.916 41 H 0.066 0.934 42 H 0.405 0.595 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.071 0.929 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.414 0.586 49 H 0.152 0.848 50 H 0.102 0.898 51 H 0.383 0.617 52 H -0.293 1.293 53 H -0.306 1.306 54 H 0.083 0.917 55 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.835 -3.401 2.741 4.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.031 3.969 10 C -0.129 4.129 11 H 0.131 0.869 12 C -0.187 4.187 13 C 0.025 3.975 14 H 0.111 0.889 15 N -0.333 5.333 16 C 0.320 3.680 17 O -0.477 6.477 18 C -0.061 4.061 19 C -0.155 4.155 20 C -0.003 4.003 21 N -0.377 5.377 22 C 0.040 3.960 23 C -0.311 4.311 24 C -0.161 4.161 25 O -0.351 6.351 26 Si 0.665 3.335 27 C -0.151 4.151 28 H 0.080 0.920 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.118 0.882 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.106 0.894 36 H 0.081 0.919 37 H 0.253 0.747 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.244 0.756 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.090 0.910 46 H 0.082 0.918 47 H 0.116 0.884 48 H 0.250 0.750 49 H 0.168 0.832 50 H 0.119 0.881 51 H 0.232 0.768 52 H -0.221 1.221 53 H -0.235 1.235 54 H 0.102 0.898 55 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.351 -3.231 1.938 4.003 hybrid contribution -0.401 0.362 0.081 0.546 sum -1.753 -2.869 2.019 3.922 Atomic orbital electron populations 1.22471 0.94073 1.03651 1.03500 1.22360 0.94464 0.92621 0.81547 1.21893 1.02473 0.90856 1.04243 1.22470 1.01648 1.02228 0.97341 1.86313 1.71575 1.23341 1.47301 1.18371 0.78817 0.80798 0.82547 1.90903 1.42375 1.71033 1.44363 1.44769 1.55196 1.12931 1.23076 1.21351 0.99558 0.78131 0.97845 1.22571 1.00779 0.97196 0.92400 0.86922 1.23591 1.00348 0.97796 0.96943 1.22217 0.90855 0.90887 0.93578 0.88929 1.45901 1.26180 1.54438 1.06750 1.20659 0.86614 0.78183 0.82505 1.90656 1.41451 1.53201 1.62429 1.19692 0.96732 0.94041 0.95648 1.21641 1.00124 1.00188 0.93527 1.21656 0.97409 0.82543 0.98691 1.44667 1.77375 1.09415 1.06257 1.20589 0.93164 0.97510 0.84778 1.20536 1.20265 0.93342 0.96925 1.24700 0.86547 1.10794 0.94011 1.86595 1.14493 1.62575 1.71392 0.94031 0.80976 0.78948 0.79524 1.23128 1.03347 0.94469 0.94170 0.92016 0.89394 0.91840 0.91166 0.88243 0.91239 0.91826 0.89405 0.91924 0.74710 0.91334 0.91688 0.89740 0.91475 0.75586 0.88699 0.92217 0.91049 0.91754 0.88427 0.74974 0.83169 0.88082 0.76849 1.22100 1.23480 0.89809 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.78 8.37 71.98 0.60 -0.18 16 2 C 0.13 0.52 1.13 -10.80 -0.01 0.51 16 3 C -0.14 0.14 8.85 71.98 0.64 0.78 16 4 C -0.18 -0.77 8.37 71.98 0.60 -0.16 16 5 O -0.37 -2.59 9.94 -55.49 -0.55 -3.14 16 6 C 0.64 5.26 8.06 129.79 1.05 6.31 16 7 O -0.60 -8.00 11.88 19.80 0.24 -7.76 16 8 N -0.70 -1.30 5.56 -590.86 -3.29 -4.59 16 9 C 0.15 -0.03 5.51 86.38 0.48 0.44 16 10 C -0.11 0.41 3.75 -10.27 -0.04 0.37 16 11 H 0.11 -0.59 8.14 -2.38 -0.02 -0.61 16 12 C -0.15 0.17 7.43 31.12 0.23 0.41 16 13 C 0.13 0.05 4.17 45.52 0.19 0.24 16 14 H 0.09 0.45 7.50 -2.39 -0.02 0.43 16 15 N -0.68 -0.46 3.03 -440.04 -1.33 -1.79 16 16 C 0.53 2.80 6.35 87.66 0.56 3.35 16 17 O -0.60 -8.28 15.42 -3.02 -0.05 -8.33 16 18 C -0.04 -0.02 2.74 -12.43 -0.03 -0.05 16 19 C -0.12 -0.08 4.92 30.80 0.15 0.07 16 20 C 0.12 -0.57 7.16 86.47 0.62 0.05 16 21 N -0.75 4.46 5.83 -345.86 -2.02 2.44 16 22 C 0.16 -0.86 9.62 83.42 0.80 -0.05 16 23 C -0.30 0.90 5.14 -16.75 -0.09 0.82 16 24 C -0.05 0.22 1.74 71.24 0.12 0.34 16 25 O -0.54 1.98 9.48 -148.98 -1.41 0.57 16 26 Si 0.76 -3.52 29.72 68.60 2.04 -1.48 16 27 C -0.11 0.38 7.39 31.12 0.23 0.61 16 28 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 29 H 0.09 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.62 5.88 -2.38 -0.01 0.60 16 31 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 32 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 33 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 35 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 36 H 0.06 0.22 8.14 -2.38 -0.02 0.20 16 37 H 0.42 -0.93 8.58 -92.71 -0.80 -1.72 16 38 H 0.07 0.09 8.14 -2.39 -0.02 0.07 16 39 H 0.06 0.10 7.85 -2.39 -0.02 0.08 16 40 H 0.08 -0.07 7.90 -2.39 -0.02 -0.09 16 41 H 0.07 0.03 8.14 -2.38 -0.02 0.01 16 42 H 0.41 -0.87 5.67 -92.71 -0.53 -1.40 16 43 H 0.10 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.06 0.32 7.75 -2.39 -0.02 0.30 16 45 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.06 -0.32 8.14 -2.38 -0.02 -0.34 16 47 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 48 H 0.41 -4.14 8.96 -92.71 -0.83 -4.97 16 49 H 0.15 -1.47 4.48 -2.91 -0.01 -1.49 16 50 H 0.10 -0.49 6.39 -2.38 -0.02 -0.50 16 51 H 0.38 -2.94 8.70 -74.05 -0.64 -3.59 16 52 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 53 H -0.31 -1.19 7.11 99.48 0.71 -0.48 16 54 H 0.08 -0.29 8.14 -2.39 -0.02 -0.31 16 55 H 0.09 -0.35 8.07 -2.38 -0.02 -0.37 16 Total: 0.00 -22.41 421.53 -2.09 -24.50 By element: Atomic # 1 Polarization: -12.45 SS G_CDS: -1.82 Total: -14.27 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 6.10 Total: 13.85 kcal Atomic # 7 Polarization: 2.69 SS G_CDS: -6.63 Total: -3.94 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -1.77 Total: -18.66 kcal Atomic # 14 Polarization: -3.52 SS G_CDS: 2.04 Total: -1.48 kcal Total: -22.41 -2.09 -24.50 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_15608500.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.162 kcal (2) G-P(sol) polarization free energy of solvation -22.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds