Wall clock time and date at job start Sat Mar 6 2021 19:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.53005 * 109.46831 * 240.00152 * 2 1 3 5 5 O 1.45193 * 109.47279 * 120.00632 * 2 1 3 6 6 C 1.34636 * 117.00693 * 59.99247 * 5 2 1 7 7 O 1.21515 * 119.99171 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00735 * 180.02562 * 6 5 2 9 9 C 1.46493 * 120.00187 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47372 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.84728 * 43.80361 * 10 9 8 12 12 C 1.53777 * 113.62078 * 175.00085 * 10 9 8 13 13 C 1.53777 * 87.08324 * 140.06449 * 12 10 9 14 14 H 1.09000 * 113.61458 * 89.20280 * 13 12 10 15 15 N 1.46504 * 113.61796 * 220.02224 * 13 12 10 16 16 C 1.34767 * 120.00027 * 205.00462 * 15 13 12 17 17 O 1.21690 * 120.00349 * 359.97438 * 16 15 13 18 18 C 1.46684 * 120.00098 * 179.97438 * 16 15 13 19 19 C 1.37870 * 126.23813 * 180.17546 * 18 16 15 20 20 C 1.39828 * 107.08722 * 180.23386 * 19 18 16 21 21 C 1.35453 * 107.86576 * 359.75451 * 20 19 18 22 22 C 1.50696 * 125.56437 * 180.02562 * 21 20 19 23 23 O 1.42899 * 109.47253 * 120.00439 * 22 21 20 24 24 Si 1.86304 * 109.47366 * 0.02562 * 22 21 20 25 25 N 1.35537 * 108.87115 * 0.02562 * 21 20 19 26 26 C 1.53780 * 113.69154 * 272.54119 * 10 9 8 27 27 H 1.08997 * 109.46689 * 299.99810 * 1 2 3 28 28 H 1.09004 * 109.46866 * 59.99424 * 1 2 3 29 29 H 1.08993 * 109.46843 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46844 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46974 * 300.00164 * 3 2 1 32 32 H 1.08997 * 109.47128 * 60.00458 * 3 2 1 33 33 H 1.08999 * 109.47078 * 300.00270 * 4 2 1 34 34 H 1.08999 * 109.46852 * 60.00090 * 4 2 1 35 35 H 1.09000 * 109.46839 * 179.97438 * 4 2 1 36 36 H 0.97003 * 119.99891 * 0.02562 * 8 6 5 37 37 H 1.08998 * 109.47012 * 60.00649 * 9 8 6 38 38 H 1.08999 * 109.47859 * 299.99922 * 9 8 6 39 39 H 1.09008 * 113.60801 * 25.51812 * 12 10 9 40 40 H 1.08996 * 113.69350 * 254.62845 * 12 10 9 41 41 H 0.97005 * 119.99754 * 24.99420 * 15 13 12 42 42 H 1.08007 * 126.45507 * 0.02597 * 19 18 16 43 43 H 1.08003 * 126.06721 * 179.76229 * 20 19 18 44 44 H 1.09009 * 109.47096 * 240.00373 * 22 21 20 45 45 H 0.96703 * 113.99694 * 299.99937 * 23 22 21 46 46 H 1.48499 * 109.99656 * 58.68092 * 24 22 21 47 47 H 1.48502 * 110.00143 * 180.02562 * 24 22 21 48 48 H 0.97001 * 125.67560 * 179.97438 * 25 21 20 49 49 H 1.09002 * 113.61659 * 105.45511 * 26 10 9 50 50 H 1.08999 * 113.61152 * 334.54944 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0141 -0.6846 1.1854 6 6 1.6523 -1.9724 1.3383 7 8 0.9515 -2.5096 0.5035 8 7 2.0673 -2.6656 2.4170 9 6 1.6740 -4.0669 2.5829 10 6 2.2730 -4.6147 3.8799 11 1 2.1774 -3.9218 4.7159 12 6 1.8200 -6.0463 4.2114 13 6 3.2640 -6.3137 4.6673 14 1 3.4390 -6.0868 5.7190 15 7 3.7674 -7.6336 4.2788 16 6 4.7554 -8.2136 4.9884 17 8 5.2299 -7.6409 5.9516 18 6 5.2590 -9.5353 4.5998 19 6 6.2575 -10.2453 5.2321 20 6 6.4182 -11.4432 4.5290 21 6 5.5310 -11.4466 3.5055 22 6 5.3634 -12.5515 2.4945 23 8 4.0293 -13.0593 2.5606 24 14 6.5684 -13.9225 2.8673 25 7 4.8186 -10.2941 3.5391 26 6 3.6908 -5.1862 3.7126 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6766 -0.2073 -2.1392 35 1 3.1300 -0.7209 -1.2496 36 1 2.6263 -2.2365 3.0835 37 1 2.0412 -4.6498 1.7382 38 1 0.5871 -4.1366 2.6274 39 1 1.5244 -6.6245 3.3358 40 1 1.0902 -6.0988 5.0193 41 1 3.3893 -8.0900 3.5109 42 1 6.8133 -9.9333 6.1040 43 1 7.1244 -12.2268 4.7610 44 1 5.5545 -12.1612 1.4947 45 1 3.7895 -13.4236 3.4237 46 1 6.3385 -14.4415 4.2395 47 1 6.4136 -15.0181 1.8769 48 1 4.1176 -10.0440 2.9170 49 1 4.4717 -4.5428 4.1183 50 1 3.9068 -5.5292 2.7008 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_6580494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:56:52 Heat of formation + Delta-G solvation = -84.500532 kcal Electronic energy + Delta-G solvation = -30569.456040 eV Core-core repulsion = 26178.770328 eV Total energy + Delta-G solvation = -4390.685712 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.54234 -41.85402 -41.00292 -39.52730 -38.29584 -37.82493 -35.99351 -35.07255 -34.34560 -32.15366 -31.40161 -29.11756 -28.39115 -28.32304 -26.94506 -26.74415 -24.52372 -23.27641 -22.46987 -21.57722 -21.45159 -21.16467 -20.62913 -19.72143 -19.12363 -18.18133 -17.82992 -17.37511 -17.30608 -16.70071 -16.50054 -16.37907 -16.08115 -15.93986 -15.57704 -15.48579 -15.18850 -15.12531 -14.83513 -14.45766 -14.41228 -14.37056 -13.98017 -13.69862 -13.51068 -13.46307 -13.35858 -13.20321 -13.03850 -12.93054 -12.88884 -12.53940 -12.41937 -12.35232 -12.25700 -11.91266 -11.77449 -11.50448 -11.41529 -11.30745 -11.13965 -10.84257 -10.27365 -10.19425 -10.07595 -9.28504 -4.83463 0.28675 1.15128 1.22213 1.54877 1.69798 1.72971 1.89091 2.02140 2.21733 2.25588 3.09528 3.33987 3.38697 3.54398 3.58762 3.69280 3.72212 3.74373 3.77378 3.82337 3.92256 4.16302 4.25806 4.32580 4.37923 4.49170 4.50886 4.58898 4.59889 4.68172 4.71588 4.74219 4.78210 4.79904 4.84800 4.85361 4.93787 4.96815 5.02341 5.05828 5.11116 5.15592 5.24588 5.24814 5.34051 5.46963 5.56919 5.59694 5.79285 6.27029 6.36185 6.39440 6.45160 7.02590 7.30945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.700 5.700 9 C 0.152 3.848 10 C -0.108 4.108 11 H 0.115 0.885 12 C -0.123 4.123 13 C 0.116 3.884 14 H 0.104 0.896 15 N -0.707 5.707 16 C 0.589 3.411 17 O -0.571 6.571 18 C -0.065 4.065 19 C -0.118 4.118 20 C -0.205 4.205 21 C 0.031 3.969 22 C -0.063 4.063 23 O -0.549 6.549 24 Si 0.793 3.207 25 N -0.512 5.512 26 C -0.144 4.144 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.061 0.939 36 H 0.417 0.583 37 H 0.068 0.932 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.409 0.591 42 H 0.146 0.854 43 H 0.168 0.832 44 H 0.135 0.865 45 H 0.390 0.610 46 H -0.283 1.283 47 H -0.299 1.299 48 H 0.427 0.573 49 H 0.071 0.929 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 0.152 -1.911 2.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.395 3.605 7 O -0.487 6.487 8 N -0.360 5.360 9 C 0.030 3.970 10 C -0.127 4.127 11 H 0.133 0.867 12 C -0.162 4.162 13 C 0.011 3.989 14 H 0.122 0.878 15 N -0.357 5.357 16 C 0.378 3.622 17 O -0.450 6.450 18 C -0.179 4.179 19 C -0.145 4.145 20 C -0.229 4.229 21 C -0.088 4.088 22 C -0.171 4.171 23 O -0.357 6.357 24 Si 0.697 3.303 25 N -0.110 5.110 26 C -0.183 4.183 27 H 0.081 0.919 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.117 0.883 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.080 0.920 36 H 0.253 0.747 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.108 0.892 41 H 0.245 0.755 42 H 0.164 0.836 43 H 0.185 0.815 44 H 0.153 0.847 45 H 0.239 0.761 46 H -0.209 1.209 47 H -0.227 1.227 48 H 0.267 0.733 49 H 0.090 0.910 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.486 -0.170 -2.182 2.242 hybrid contribution -1.371 0.006 0.241 1.392 sum -0.885 -0.164 -1.942 2.140 Atomic orbital electron populations 1.22471 0.94003 1.03696 1.03514 1.22356 0.94494 0.92581 0.81539 1.21892 1.02437 0.90922 1.04248 1.22471 1.01598 1.02254 0.97353 1.86310 1.71551 1.23392 1.47270 1.18376 0.78802 0.80791 0.82576 1.90906 1.42348 1.71041 1.44360 1.44754 1.55258 1.12905 1.23115 1.21366 0.99987 0.78171 0.97492 1.22533 0.95901 0.97070 0.97236 0.86662 1.23312 0.95210 0.94767 1.02899 1.22585 0.95224 0.81134 0.99926 0.87848 1.45778 1.37249 1.20344 1.32365 1.17261 0.79357 0.83519 0.82080 1.90840 1.59883 1.64841 1.29424 1.20355 1.05598 0.95221 0.96741 1.21494 0.97660 0.94576 1.00737 1.20941 1.03880 1.00390 0.97672 1.21264 0.97119 0.89705 1.00718 1.25070 0.91740 0.99209 1.01113 1.86578 1.28962 1.80573 1.39561 0.93303 0.85953 0.74418 0.76640 1.41884 1.30658 1.14504 1.23908 1.23575 0.97045 0.97227 1.00430 0.91949 0.89474 0.91757 0.91225 0.88309 0.91189 0.91752 0.89473 0.91996 0.74683 0.91347 0.91167 0.87782 0.89221 0.75467 0.83650 0.81495 0.84732 0.76070 1.20920 1.22653 0.73283 0.91007 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 2 C 0.13 0.36 1.13 -10.79 -0.01 0.35 16 3 C -0.14 0.28 8.85 71.98 0.64 0.92 16 4 C -0.18 -0.55 8.37 71.98 0.60 0.05 16 5 O -0.37 -1.99 9.94 -55.45 -0.55 -2.54 16 6 C 0.64 3.95 8.06 129.79 1.05 5.00 16 7 O -0.60 -6.77 11.88 19.79 0.24 -6.54 16 8 N -0.70 0.49 5.56 -590.87 -3.28 -2.80 16 9 C 0.15 -0.55 5.51 86.38 0.48 -0.08 16 10 C -0.11 0.82 3.75 -10.27 -0.04 0.78 16 11 H 0.12 -1.02 8.14 -2.39 -0.02 -1.04 16 12 C -0.12 1.01 7.39 31.12 0.23 1.24 16 13 C 0.12 -0.40 4.24 45.52 0.19 -0.21 16 14 H 0.10 0.08 7.46 -2.39 -0.02 0.06 16 15 N -0.71 1.89 5.35 -444.01 -2.38 -0.48 16 16 C 0.59 2.89 7.79 86.45 0.67 3.56 16 17 O -0.57 -7.68 16.48 -4.32 -0.07 -7.75 16 18 C -0.07 -0.17 7.06 40.35 0.28 0.12 16 19 C -0.12 -0.42 10.65 22.57 0.24 -0.18 16 20 C -0.20 0.19 9.32 22.01 0.21 0.40 16 21 C 0.03 -0.09 6.47 41.34 0.27 0.18 16 22 C -0.06 0.32 3.08 71.23 0.22 0.54 16 23 O -0.55 1.33 12.88 -148.98 -1.92 -0.59 16 24 Si 0.79 -4.10 30.54 68.60 2.10 -2.00 16 25 N -0.51 1.61 5.99 -171.93 -1.03 0.58 16 26 C -0.14 0.74 7.43 31.12 0.23 0.97 16 27 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 28 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 29 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 30 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 32 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 34 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 36 H 0.42 -1.95 8.58 -92.71 -0.80 -2.75 16 37 H 0.07 -0.16 7.85 -2.39 -0.02 -0.18 16 38 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 39 H 0.10 -1.08 8.08 -2.38 -0.02 -1.10 16 40 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 41 H 0.41 -3.47 7.86 -92.70 -0.73 -4.20 16 42 H 0.15 0.61 8.06 -2.91 -0.02 0.59 16 43 H 0.17 -0.85 6.17 -2.91 -0.02 -0.87 16 44 H 0.14 -1.03 7.96 -2.38 -0.02 -1.05 16 45 H 0.39 -2.72 8.70 -74.06 -0.64 -3.36 16 46 H -0.28 0.11 7.11 99.48 0.71 0.82 16 47 H -0.30 -0.68 7.11 99.48 0.71 0.02 16 48 H 0.43 -3.52 8.19 -92.71 -0.76 -4.28 16 49 H 0.07 -0.23 8.14 -2.39 -0.02 -0.25 16 50 H 0.09 -0.47 7.90 -2.39 -0.02 -0.49 16 Total: 0.00 -24.24 408.45 -2.93 -27.17 By element: Atomic # 1 Polarization: -16.86 SS G_CDS: -1.89 Total: -18.75 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.86 Total: 13.70 kcal Atomic # 7 Polarization: 3.99 SS G_CDS: -6.69 Total: -2.70 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -2.31 Total: -17.42 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.10 Total: -2.00 kcal Total: -24.24 -2.93 -27.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_6580494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.331 kcal (2) G-P(sol) polarization free energy of solvation -24.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds