Wall clock time and date at job start Sat Mar 6 2021 19:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33819 * 122.44835 * 2 1 4 4 C 1.50690 * 124.52244 * 0.02562 * 3 2 1 5 5 O 1.42906 * 109.47418 * 313.65041 * 4 3 2 6 6 Si 1.86304 * 109.47164 * 193.65092 * 4 3 2 7 7 S 1.70625 * 110.95389 * 179.70313 * 3 2 1 8 8 C 1.75837 * 91.56171 * 0.34895 * 7 3 2 9 9 C 1.46574 * 125.45794 * 179.91125 * 8 7 3 10 10 O 1.21694 * 120.00329 * 179.42263 * 9 8 7 11 11 N 1.34783 * 119.99946 * 359.69854 * 9 8 7 12 12 C 1.46500 * 120.00098 * 179.97438 * 11 9 8 13 13 H 1.08997 * 112.84714 * 23.80245 * 12 11 9 14 14 C 1.53782 * 113.61565 * 154.99862 * 12 11 9 15 15 C 1.53782 * 87.07861 * 139.98033 * 14 12 11 16 16 H 1.09002 * 113.61338 * 89.11972 * 15 14 12 17 17 C 1.53006 * 113.61178 * 220.01825 * 15 14 12 18 18 N 1.46504 * 109.46935 * 185.00405 * 17 15 14 19 19 C 1.34773 * 119.99726 * 180.02562 * 18 17 15 20 20 O 1.21506 * 120.00326 * 0.02562 * 19 18 17 21 21 O 1.34643 * 119.99823 * 179.97438 * 19 18 17 22 22 C 1.45200 * 117.00170 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47069 * 59.99985 * 22 21 19 24 24 C 1.52992 * 109.47205 * 180.02562 * 22 21 19 25 25 C 1.53003 * 109.46565 * 300.00097 * 22 21 19 26 26 C 1.53772 * 87.08409 * 334.56833 * 15 14 12 27 27 C 1.36647 * 109.08062 * 359.65213 * 8 7 3 28 28 H 1.09005 * 109.47256 * 275.84677 * 1 2 3 29 29 H 1.08994 * 109.47143 * 35.84828 * 1 2 3 30 30 H 1.08995 * 109.47027 * 155.84961 * 1 2 3 31 31 H 1.09001 * 109.47381 * 73.65063 * 4 3 2 32 32 H 0.96700 * 113.99427 * 299.99793 * 5 4 3 33 33 H 1.48505 * 109.99991 * 180.02562 * 6 4 3 34 34 H 1.48506 * 109.99845 * 301.31508 * 6 4 3 35 35 H 0.96999 * 119.99817 * 359.97438 * 11 9 8 36 36 H 1.08996 * 113.61399 * 254.52997 * 14 12 11 37 37 H 1.09007 * 113.60927 * 25.43510 * 14 12 11 38 38 H 1.08998 * 109.47310 * 305.00115 * 17 15 14 39 39 H 1.09001 * 109.47063 * 65.00349 * 17 15 14 40 40 H 0.97001 * 119.99928 * 359.97438 * 18 17 15 41 41 H 1.08995 * 109.46944 * 59.99920 * 23 22 21 42 42 H 1.09002 * 109.47024 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47245 * 299.99908 * 23 22 21 44 44 H 1.09003 * 109.47413 * 59.99570 * 24 22 21 45 45 H 1.09000 * 109.47657 * 179.97438 * 24 22 21 46 46 H 1.09004 * 109.47088 * 299.99931 * 24 22 21 47 47 H 1.09001 * 109.47506 * 60.00241 * 25 22 21 48 48 H 1.09008 * 109.46531 * 180.02562 * 25 22 21 49 49 H 1.08997 * 109.47294 * 299.99497 * 25 22 21 50 50 H 1.09003 * 113.61846 * 270.88536 * 26 15 14 51 51 H 1.09000 * 113.61828 * 139.98330 * 26 15 14 52 52 H 1.08006 * 123.34953 * 180.23715 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6355 2.5161 0.0006 5 8 0.5929 2.5910 -0.9739 6 14 2.9632 3.7554 -0.4142 7 16 3.8970 0.7893 0.0083 8 6 3.5937 -0.9427 0.0010 9 6 4.6231 -1.9862 0.0016 10 8 4.3002 -3.1595 0.0069 11 7 5.9274 -1.6462 0.0019 12 6 6.9562 -2.6891 0.0031 13 1 6.5994 -3.6361 -0.4018 14 6 8.2982 -2.2312 -0.5922 15 6 8.9793 -3.0278 0.5332 16 1 9.1764 -4.0681 0.2743 17 6 10.1975 -2.3222 1.1327 18 7 10.8436 -3.2061 2.1063 19 6 11.9441 -2.7926 2.7653 20 8 12.4002 -1.6867 2.5523 21 8 12.5376 -3.6047 3.6604 22 6 13.7185 -3.0933 4.3330 23 6 13.3553 -1.8243 5.1067 24 6 14.2494 -4.1491 5.3045 25 6 14.7952 -2.7678 3.2958 26 6 7.6900 -2.8292 1.3473 27 6 2.2447 -1.1600 0.0007 28 1 -0.3634 0.1047 1.0224 29 1 -0.3633 0.8329 -0.6018 30 1 -0.3633 -0.9377 -0.4204 31 1 1.2275 2.7371 0.9869 32 1 0.8846 2.4053 -1.8770 33 1 2.3947 5.1274 -0.4163 34 1 4.0683 3.6657 0.5738 35 1 6.1847 -0.7110 0.0014 36 1 8.4925 -2.6292 -1.5881 37 1 8.4608 -1.1554 -0.5258 38 1 10.9035 -2.0785 0.3388 39 1 9.8787 -1.4059 1.6294 40 1 10.4788 -4.0885 2.2771 41 1 12.5882 -2.0562 5.8454 42 1 14.2419 -1.4401 5.6112 43 1 12.9773 -1.0722 4.4141 44 1 14.5082 -5.0530 4.7530 45 1 15.1361 -3.7655 5.8091 46 1 13.4824 -4.3815 6.0434 47 1 14.4172 -2.0157 2.6033 48 1 15.6819 -2.3843 3.8008 49 1 15.0539 -3.6718 2.7447 50 1 7.6863 -1.9168 1.9438 51 1 7.3933 -3.7097 1.9171 52 1 1.8019 -2.1452 0.0004 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_6739946.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:57:00 Heat of formation + Delta-G solvation = -95.932915 kcal Electronic energy + Delta-G solvation = -32300.716144 eV Core-core repulsion = 27780.349085 eV Total energy + Delta-G solvation = -4520.367059 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 383.165 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.85154 -41.31893 -40.17159 -39.44446 -38.28501 -37.34190 -35.96396 -35.04771 -34.30988 -32.17377 -30.14680 -29.14690 -28.38229 -28.31650 -26.75419 -26.64844 -24.77636 -23.73328 -22.75123 -21.81402 -21.39759 -20.63821 -20.14095 -19.36194 -19.05269 -17.96331 -17.62956 -17.33365 -17.28793 -17.08222 -16.50971 -16.47447 -16.09745 -16.01287 -15.85880 -15.49886 -15.45584 -15.16895 -14.82259 -14.63342 -14.45424 -14.43859 -13.96124 -13.58241 -13.46726 -13.43482 -13.35593 -13.20044 -13.14005 -13.04498 -12.92443 -12.89734 -12.87972 -12.53466 -12.47950 -12.40216 -12.30232 -12.15072 -11.76082 -11.74341 -11.46851 -11.40151 -11.22345 -11.11958 -10.58994 -10.25993 -10.18085 -9.76633 -9.44536 -5.11014 -0.69362 0.24853 0.65571 1.12821 1.16958 1.26006 1.54619 1.74819 1.88872 2.00579 2.03599 3.11401 3.36982 3.41026 3.56200 3.59786 3.68603 3.73065 3.74999 3.78159 3.81494 3.93089 4.09664 4.19214 4.29342 4.39768 4.41313 4.50558 4.57594 4.59723 4.61831 4.69988 4.73733 4.74919 4.78891 4.81187 4.82886 4.84545 4.86016 4.88183 4.97056 5.00531 5.04631 5.07956 5.16812 5.25539 5.26061 5.35584 5.38112 5.46013 5.51797 5.58586 6.32468 6.38101 6.66036 6.99682 7.32725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.096 4.096 3 C -0.238 4.238 4 C -0.029 4.029 5 O -0.539 6.539 6 Si 0.723 3.277 7 S 0.244 5.756 8 C -0.283 4.283 9 C 0.590 3.410 10 O -0.571 6.571 11 N -0.704 5.704 12 C 0.115 3.885 13 H 0.105 0.895 14 C -0.122 4.122 15 C -0.108 4.108 16 H 0.116 0.884 17 C 0.151 3.849 18 N -0.700 5.700 19 C 0.641 3.359 20 O -0.595 6.595 21 O -0.371 6.371 22 C 0.127 3.873 23 C -0.180 4.180 24 C -0.138 4.138 25 C -0.179 4.179 26 C -0.147 4.147 27 C -0.059 4.059 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.067 0.933 31 H 0.121 0.879 32 H 0.397 0.603 33 H -0.270 1.270 34 H -0.253 1.253 35 H 0.410 0.590 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.416 0.584 41 H 0.060 0.940 42 H 0.086 0.914 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.086 0.914 49 H 0.062 0.938 50 H 0.090 0.910 51 H 0.070 0.930 52 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.060 1.662 -2.240 3.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.358 4.358 4 C -0.142 4.142 5 O -0.348 6.348 6 Si 0.625 3.375 7 S 0.513 5.487 8 C -0.403 4.403 9 C 0.378 3.622 10 O -0.452 6.452 11 N -0.355 5.355 12 C 0.010 3.990 13 H 0.123 0.877 14 C -0.161 4.161 15 C -0.127 4.127 16 H 0.134 0.866 17 C 0.029 3.971 18 N -0.360 5.360 19 C 0.394 3.606 20 O -0.486 6.486 21 O -0.286 6.286 22 C 0.090 3.910 23 C -0.237 4.237 24 C -0.195 4.195 25 C -0.237 4.237 26 C -0.186 4.186 27 C -0.093 4.093 28 H 0.084 0.916 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.138 0.862 32 H 0.248 0.752 33 H -0.195 1.195 34 H -0.179 1.179 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.124 0.876 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.253 0.747 41 H 0.079 0.921 42 H 0.105 0.895 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.117 0.883 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.105 0.895 49 H 0.081 0.919 50 H 0.108 0.892 51 H 0.089 0.911 52 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 3.583 3.130 -1.504 4.990 hybrid contribution -1.862 -1.246 0.665 2.337 sum 1.721 1.885 -0.839 2.687 Atomic orbital electron populations 1.20752 0.88374 1.04305 1.03010 1.18776 0.98802 0.90480 1.02810 1.24617 0.98744 1.01167 1.11249 1.24577 0.98366 0.95094 0.96145 1.86454 1.34978 1.92621 1.20700 0.94129 0.76605 0.77729 0.89057 1.82681 1.02539 0.95943 1.67498 1.24641 0.97779 0.98512 1.19345 1.17202 0.82672 0.87021 0.75347 1.90823 1.82376 1.19983 1.51979 1.45801 1.04514 1.10887 1.74258 1.22637 0.86083 0.92237 0.98021 0.87668 1.23327 0.91725 1.02004 0.99025 1.22535 0.91760 1.01454 0.96947 0.86582 1.21388 0.93414 0.92195 0.90090 1.44767 1.26875 1.21378 1.43028 1.18377 0.81110 0.82479 0.78600 1.90903 1.66461 1.22031 1.69195 1.86313 1.43647 1.46279 1.52340 1.22347 0.81348 0.95294 0.91970 1.22469 1.03304 0.97370 1.00537 1.21891 1.02036 0.97773 0.97810 1.22471 0.98799 1.02719 0.99678 1.23601 0.95075 1.03140 0.96749 1.20817 0.91381 1.00271 0.96808 0.91645 0.88441 0.91375 0.86215 0.75218 1.19495 1.17891 0.75279 0.88831 0.87587 0.90960 0.91349 0.74718 0.92067 0.89480 0.91715 0.91181 0.88317 0.91282 0.91699 0.89492 0.91939 0.89174 0.91087 0.83690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.05 9.74 71.24 0.69 0.74 16 2 C -0.10 -0.11 5.75 -21.05 -0.12 -0.23 16 3 C -0.24 0.38 5.61 24.68 0.14 0.51 16 4 C -0.03 0.10 2.68 71.23 0.19 0.29 16 5 O -0.54 2.02 10.27 -148.98 -1.53 0.49 16 6 Si 0.72 -3.63 30.97 68.60 2.12 -1.50 16 7 S 0.24 -0.76 19.34 -56.49 -1.09 -1.85 16 8 C -0.28 -0.83 6.45 24.07 0.16 -0.68 16 9 C 0.59 3.33 7.78 86.42 0.67 4.01 16 10 O -0.57 -7.88 16.44 -4.33 -0.07 -7.95 16 11 N -0.70 0.98 5.35 -444.10 -2.38 -1.40 16 12 C 0.11 -0.35 4.24 45.52 0.19 -0.16 16 13 H 0.11 0.08 7.46 -2.39 -0.02 0.06 16 14 C -0.12 1.01 7.39 31.12 0.23 1.24 16 15 C -0.11 0.81 3.75 -10.27 -0.04 0.77 16 16 H 0.12 -1.05 8.14 -2.39 -0.02 -1.07 16 17 C 0.15 -0.55 5.51 86.38 0.48 -0.08 16 18 N -0.70 0.45 5.56 -590.84 -3.29 -2.83 16 19 C 0.64 3.98 8.06 129.79 1.05 5.03 16 20 O -0.59 -6.74 11.88 19.82 0.24 -6.51 16 21 O -0.37 -2.03 9.94 -55.53 -0.55 -2.58 16 22 C 0.13 0.38 1.13 -10.80 -0.01 0.36 16 23 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 24 C -0.14 0.26 8.85 71.98 0.64 0.90 16 25 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 26 C -0.15 0.67 7.43 31.12 0.23 0.90 16 27 C -0.06 -0.23 9.78 21.72 0.21 -0.02 16 28 H 0.06 0.00 8.14 -2.38 -0.02 -0.02 16 29 H 0.10 -0.11 5.55 -2.39 -0.01 -0.12 16 30 H 0.07 -0.08 8.10 -2.39 -0.02 -0.09 16 31 H 0.12 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.40 -4.40 8.70 -74.06 -0.64 -5.04 16 33 H -0.27 -0.45 7.11 99.48 0.71 0.26 16 34 H -0.25 0.47 7.11 99.48 0.71 1.17 16 35 H 0.41 -2.60 7.84 -92.71 -0.73 -3.33 16 36 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 37 H 0.11 -1.11 8.08 -2.38 -0.02 -1.13 16 38 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 39 H 0.07 -0.15 7.84 -2.39 -0.02 -0.17 16 40 H 0.42 -1.91 8.58 -92.71 -0.80 -2.70 16 41 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.06 0.54 5.88 -2.39 -0.01 0.52 16 44 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 45 H 0.10 -0.51 8.14 -2.39 -0.02 -0.53 16 46 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 47 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 48 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 49 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 50 H 0.09 -0.40 7.90 -2.39 -0.02 -0.42 16 51 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 52 H 0.15 0.73 8.06 -2.91 -0.02 0.70 16 Total: 0.00 -21.81 430.41 -1.80 -23.61 By element: Atomic # 1 Polarization: -12.00 SS G_CDS: -1.16 Total: -13.16 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 5.91 Total: 13.69 kcal Atomic # 7 Polarization: 1.43 SS G_CDS: -5.66 Total: -4.23 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -1.92 Total: -16.55 kcal Atomic # 14 Polarization: -3.63 SS G_CDS: 2.12 Total: -1.50 kcal Atomic # 16 Polarization: -0.76 SS G_CDS: -1.09 Total: -1.85 kcal Total: -21.81 -1.80 -23.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_6739946.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.318 kcal (2) G-P(sol) polarization free energy of solvation -21.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds