Wall clock time and date at job start Sat Mar 6 2021 19:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36774 * 125.79718 * 2 1 4 4 C 1.47257 * 126.94466 * 0.02562 * 3 2 1 5 5 O 1.21622 * 120.00183 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99867 * 180.02562 * 4 3 2 7 7 C 1.46500 * 119.99778 * 180.02562 * 6 4 3 8 8 H 1.09002 * 112.85333 * 25.33884 * 7 6 4 9 9 C 1.53782 * 113.61212 * 156.52841 * 7 6 4 10 10 C 1.53786 * 87.07862 * 139.98082 * 9 7 6 11 11 H 1.08992 * 113.61400 * 89.20631 * 10 9 7 12 12 C 1.53002 * 113.61254 * 220.01819 * 10 9 7 13 13 N 1.46497 * 109.47151 * 185.00016 * 12 10 9 14 14 C 1.34781 * 120.00299 * 179.97438 * 13 12 10 15 15 O 1.21509 * 119.99750 * 0.02562 * 14 13 12 16 16 O 1.34638 * 119.99955 * 179.97438 * 14 13 12 17 17 C 1.45199 * 116.99595 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47072 * 60.00484 * 17 16 14 19 19 C 1.52997 * 109.47011 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47345 * 300.00533 * 17 16 14 21 21 C 1.53781 * 113.61513 * 254.13449 * 7 6 4 22 22 C 1.46692 * 106.10862 * 179.75862 * 3 2 1 23 23 C 1.34484 * 106.33639 * 0.39085 * 22 3 2 24 24 C 1.50699 * 125.57334 * 179.86443 * 23 22 3 25 25 O 1.42901 * 109.46830 * 299.71923 * 24 23 22 26 26 Si 1.86298 * 109.46950 * 179.72360 * 24 23 22 27 27 N 1.34655 * 125.80095 * 179.97438 * 2 1 3 28 28 H 1.09007 * 109.47037 * 270.02716 * 1 2 3 29 29 H 1.09001 * 109.47166 * 30.02828 * 1 2 3 30 30 H 1.08998 * 109.47269 * 150.03025 * 1 2 3 31 31 H 0.97000 * 119.99942 * 359.97438 * 6 4 3 32 32 H 1.08996 * 113.61840 * 254.53000 * 9 7 6 33 33 H 1.09006 * 113.61467 * 25.35321 * 9 7 6 34 34 H 1.09003 * 109.47519 * 305.00052 * 12 10 9 35 35 H 1.09001 * 109.46969 * 65.00132 * 12 10 9 36 36 H 0.97001 * 119.99952 * 0.02562 * 13 12 10 37 37 H 1.09003 * 109.47058 * 59.99641 * 18 17 16 38 38 H 1.08995 * 109.47364 * 179.97438 * 18 17 16 39 39 H 1.09003 * 109.47152 * 299.99798 * 18 17 16 40 40 H 1.08997 * 109.47500 * 59.99873 * 19 17 16 41 41 H 1.08995 * 109.47318 * 180.02562 * 19 17 16 42 42 H 1.09003 * 109.47005 * 300.00289 * 19 17 16 43 43 H 1.08996 * 109.47298 * 59.99648 * 20 17 16 44 44 H 1.08999 * 109.47207 * 180.02562 * 20 17 16 45 45 H 1.09001 * 109.47075 * 299.99672 * 20 17 16 46 46 H 1.09008 * 113.61347 * 334.57346 * 21 7 6 47 47 H 1.09000 * 113.61452 * 105.46714 * 21 7 6 48 48 H 1.08001 * 126.83054 * 180.25907 * 22 3 2 49 49 H 1.08991 * 109.47351 * 59.72070 * 24 23 22 50 50 H 0.96708 * 114.00246 * 299.99864 * 25 24 23 51 51 H 1.48506 * 109.99834 * 180.02562 * 26 24 23 52 52 H 1.48502 * 110.00011 * 301.31529 * 26 24 23 53 53 H 0.96994 * 124.85111 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1094 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0015 6 7 2.7849 3.5055 -0.0001 7 6 2.3503 4.9045 0.0010 8 1 1.3582 5.0392 0.4321 9 6 3.4024 5.8760 0.5615 10 6 2.9908 6.8446 -0.5598 11 1 2.1746 7.5117 -0.2827 12 6 4.1706 7.5820 -1.1964 13 7 3.6697 8.5618 -2.1634 14 6 4.5349 9.3336 -2.8506 15 8 5.7305 9.2164 -2.6684 16 8 4.0745 10.2338 -3.7398 17 6 5.0636 11.0309 -4.4430 18 6 5.9923 10.1085 -5.2353 19 6 4.3567 11.9902 -5.4027 20 6 5.8839 11.8342 -3.4318 21 6 2.5338 5.6077 -1.3542 22 6 3.6882 0.6152 0.0059 23 6 3.6096 -0.7274 0.0002 24 6 4.7820 -1.6742 0.0002 25 8 5.5761 -1.4490 -1.1663 26 14 4.1615 -3.4308 -0.0006 27 7 2.2947 -1.0921 0.0005 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5133 31 1 3.7310 3.2915 -0.0005 32 1 3.1702 6.2418 1.5616 33 1 4.4256 5.5111 0.4713 34 1 4.7396 8.0950 -0.4210 35 1 4.8148 6.8654 -1.7058 36 1 2.7152 8.6557 -2.3086 37 1 5.4078 9.5362 -5.9557 38 1 6.7345 10.7069 -5.7636 39 1 6.4958 9.4254 -4.5513 40 1 3.6953 12.6472 -4.8381 41 1 5.0992 12.5882 -5.9310 42 1 3.7720 11.4181 -6.1231 43 1 6.3874 11.1511 -2.7478 44 1 6.6261 12.4330 -3.9598 45 1 5.2223 12.4914 -2.8675 46 1 3.3192 5.1698 -1.9705 47 1 1.6013 5.7571 -1.8985 48 1 4.5890 1.2110 0.0115 49 1 5.3872 -1.5031 0.8903 50 1 5.1008 -1.5835 -1.9977 51 1 5.3082 -4.3745 0.0001 52 1 3.3081 -3.6686 1.1912 53 1 1.9734 -2.0073 0.0013 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437770_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:57:22 Heat of formation + Delta-G solvation = -87.872871 kcal Electronic energy + Delta-G solvation = -32735.032105 eV Core-core repulsion = 28188.662538 eV Total energy + Delta-G solvation = -4546.369566 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.48214 -41.82757 -40.89767 -39.36954 -38.24789 -37.71923 -35.92067 -34.98450 -34.19074 -32.78931 -32.03897 -29.14492 -28.75918 -28.37270 -28.30433 -26.68240 -25.84326 -24.40397 -23.26158 -22.36274 -21.55949 -21.29010 -20.97282 -20.12282 -19.10254 -18.66220 -17.79491 -17.71435 -17.31937 -17.15729 -16.88191 -16.58432 -16.34842 -15.90225 -15.86249 -15.60130 -15.44044 -15.27265 -15.03893 -14.59969 -14.57651 -14.48023 -14.40840 -14.07638 -13.84363 -13.44640 -13.40215 -13.35582 -13.32092 -13.13558 -12.96405 -12.90531 -12.86896 -12.66685 -12.55406 -12.49316 -12.37255 -12.24861 -12.14665 -11.69686 -11.41862 -11.38024 -11.12368 -10.90918 -10.48235 -10.21269 -10.07977 -9.78275 -9.14967 -5.14467 0.70278 1.12878 1.17826 1.26922 1.49642 1.75613 1.84142 2.04899 2.46273 2.52614 3.13101 3.43394 3.47251 3.61436 3.71344 3.74173 3.78357 3.79198 3.85959 3.89031 3.94168 4.08048 4.23951 4.25205 4.42999 4.45210 4.51192 4.52719 4.60762 4.63366 4.72026 4.73641 4.75963 4.77496 4.78761 4.83184 4.85025 4.87111 4.88899 5.01283 5.05110 5.09604 5.09865 5.20577 5.25655 5.26611 5.33945 5.40745 5.59305 5.65588 5.70376 5.86705 6.39254 6.42712 6.67657 6.71770 7.33683 7.36805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.118 3.882 3 C -0.267 4.267 4 C 0.587 3.413 5 O -0.586 6.586 6 N -0.708 5.708 7 C 0.119 3.881 8 H 0.100 0.900 9 C -0.124 4.124 10 C -0.108 4.108 11 H 0.115 0.885 12 C 0.152 3.848 13 N -0.700 5.700 14 C 0.641 3.359 15 O -0.595 6.595 16 O -0.371 6.371 17 C 0.126 3.874 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.180 4.180 21 C -0.144 4.144 22 C -0.138 4.138 23 C -0.024 4.024 24 C -0.038 4.038 25 O -0.548 6.548 26 Si 0.764 3.236 27 N -0.534 5.534 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.410 0.590 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.416 0.584 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.087 0.913 47 H 0.069 0.931 48 H 0.156 0.844 49 H 0.122 0.878 50 H 0.396 0.604 51 H -0.291 1.291 52 H -0.276 1.276 53 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.521 -2.623 -1.783 3.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.002 4.002 3 C -0.276 4.276 4 C 0.378 3.622 5 O -0.469 6.469 6 N -0.358 5.358 7 C 0.014 3.986 8 H 0.118 0.882 9 C -0.163 4.163 10 C -0.127 4.127 11 H 0.133 0.867 12 C 0.030 3.970 13 N -0.360 5.360 14 C 0.395 3.605 15 O -0.487 6.487 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.182 4.182 22 C -0.162 4.162 23 C -0.133 4.133 24 C -0.149 4.149 25 O -0.356 6.356 26 Si 0.669 3.331 27 N -0.135 5.135 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.247 0.753 32 H 0.106 0.894 33 H 0.120 0.880 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.088 0.912 48 H 0.173 0.827 49 H 0.139 0.861 50 H 0.246 0.754 51 H -0.218 1.218 52 H -0.203 1.203 53 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -1.291 -3.216 -0.890 3.577 hybrid contribution 0.322 0.053 0.386 0.506 sum -0.968 -3.163 -0.503 3.346 Atomic orbital electron populations 1.20618 0.86038 1.04816 1.03912 1.20577 0.94315 0.85604 0.99678 1.20234 0.94112 0.91895 1.21391 1.17632 0.85095 0.85006 0.74497 1.90718 1.18076 1.84997 1.53091 1.45699 1.09918 1.05355 1.74798 1.22473 0.99517 0.79106 0.97547 0.88215 1.23293 0.99683 0.94373 0.98903 1.22563 0.97870 0.95313 0.96922 0.86698 1.21368 0.96184 0.89416 0.90033 1.44760 1.09967 1.38749 1.42512 1.18374 0.84546 0.78969 0.78658 1.90904 1.15584 1.72236 1.69938 1.86312 1.41778 1.48549 1.51874 1.22354 0.87287 0.89879 0.91476 1.22470 1.00130 1.00644 1.00442 1.21889 1.01745 0.97911 0.97922 1.22469 1.00835 1.00474 0.99903 1.23586 1.02213 0.95603 0.96840 1.21951 0.95391 0.93243 1.05655 1.20690 0.84748 0.95641 1.12199 1.24578 0.91281 1.07229 0.91845 1.86516 1.39753 1.93096 1.16202 0.94300 0.81052 0.72247 0.85528 1.41680 1.05164 1.08786 1.57865 0.90084 0.89885 0.88824 0.75306 0.89364 0.88031 0.91185 0.91468 0.74697 0.92002 0.89453 0.91779 0.91182 0.88300 0.91229 0.91784 0.89459 0.91945 0.89449 0.91186 0.82689 0.86095 0.75352 1.21758 1.20294 0.73234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.03 9.88 71.24 0.70 0.74 16 2 C 0.12 0.18 7.17 41.78 0.30 0.48 16 3 C -0.27 -1.15 6.29 -19.04 -0.12 -1.27 16 4 C 0.59 4.18 7.81 86.61 0.68 4.86 16 5 O -0.59 -7.91 14.43 -4.10 -0.06 -7.97 16 6 N -0.71 -0.67 5.36 -443.45 -2.38 -3.05 16 7 C 0.12 -0.10 4.21 45.52 0.19 0.09 16 8 H 0.10 0.30 7.50 -2.39 -0.02 0.28 16 9 C -0.12 0.69 7.39 31.12 0.23 0.92 16 10 C -0.11 0.59 3.75 -10.21 -0.04 0.55 16 11 H 0.11 -0.82 8.14 -2.39 -0.02 -0.84 16 12 C 0.15 -0.27 5.51 86.38 0.48 0.20 16 13 N -0.70 -0.47 5.56 -590.84 -3.29 -3.76 16 14 C 0.64 4.68 8.06 129.79 1.05 5.72 16 15 O -0.60 -7.48 11.88 19.81 0.24 -7.24 16 16 O -0.37 -2.31 9.94 -55.47 -0.55 -2.86 16 17 C 0.13 0.45 1.13 -10.80 -0.01 0.44 16 18 C -0.18 -0.69 8.37 71.98 0.60 -0.09 16 19 C -0.14 0.21 8.85 71.98 0.64 0.84 16 20 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 21 C -0.14 0.38 7.44 31.18 0.23 0.61 16 22 C -0.14 -0.09 10.44 23.62 0.25 0.15 16 23 C -0.02 0.05 6.11 40.98 0.25 0.30 16 24 C -0.04 0.15 2.98 71.24 0.21 0.37 16 25 O -0.55 1.62 12.87 -148.98 -1.92 -0.30 16 26 Si 0.76 -4.76 30.94 68.60 2.12 -2.64 16 27 N -0.53 1.78 5.41 -171.07 -0.93 0.86 16 28 H 0.08 -0.04 8.14 -2.38 -0.02 -0.06 16 29 H 0.08 0.39 6.47 -2.39 -0.02 0.37 16 30 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 31 H 0.41 -1.34 7.83 -92.71 -0.73 -2.07 16 32 H 0.09 -0.55 8.14 -2.39 -0.02 -0.57 16 33 H 0.10 -0.73 8.07 -2.38 -0.02 -0.75 16 34 H 0.07 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.07 -0.01 7.85 -2.39 -0.02 -0.03 16 36 H 0.42 -1.42 8.58 -92.71 -0.80 -2.22 16 37 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 39 H 0.06 0.58 5.88 -2.39 -0.01 0.57 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.06 0.58 5.88 -2.39 -0.01 0.56 16 44 H 0.09 0.02 8.14 -2.39 -0.02 0.00 16 45 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.09 -0.18 7.90 -2.38 -0.02 -0.20 16 47 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 48 H 0.16 -0.33 7.70 -2.91 -0.02 -0.35 16 49 H 0.12 -0.40 7.96 -2.39 -0.02 -0.41 16 50 H 0.40 -4.14 8.70 -74.05 -0.64 -4.79 16 51 H -0.29 -0.53 7.11 99.48 0.71 0.17 16 52 H -0.28 0.59 7.11 99.48 0.71 1.29 16 53 H 0.43 -3.82 6.70 -92.71 -0.62 -4.44 16 Total: 0.00 -24.43 427.25 -2.30 -26.74 By element: Atomic # 1 Polarization: -12.86 SS G_CDS: -1.79 Total: -14.65 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.24 Total: 14.87 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -6.59 Total: -5.95 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -2.29 Total: -18.37 kcal Atomic # 14 Polarization: -4.76 SS G_CDS: 2.12 Total: -2.64 kcal Total: -24.43 -2.30 -26.74 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437770_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.135 kcal (2) G-P(sol) polarization free energy of solvation -24.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds