Wall clock time and date at job start Sat Mar 6 2021 19:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47676 * 2 1 4 4 C 1.53004 * 109.47353 * 239.99753 * 2 1 3 5 5 O 1.45208 * 109.46830 * 120.00081 * 2 1 3 6 6 C 1.34633 * 116.99886 * 60.00120 * 5 2 1 7 7 O 1.21507 * 120.00555 * 359.97438 * 6 5 2 8 8 N 1.34784 * 119.99596 * 179.97438 * 6 5 2 9 9 C 1.46494 * 119.99635 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47001 * 180.02562 * 9 8 6 11 11 H 1.09004 * 112.84519 * 314.66374 * 10 9 8 12 12 C 1.53780 * 113.61863 * 85.86173 * 10 9 8 13 13 C 1.53956 * 87.01914 * 139.95388 * 12 10 9 14 14 H 1.08994 * 113.73803 * 220.05470 * 13 12 10 15 15 N 1.46498 * 113.53626 * 89.19133 * 13 12 10 16 16 C 1.34784 * 120.00194 * 107.50159 * 15 13 12 17 17 O 1.21697 * 119.99503 * 0.02562 * 16 15 13 18 18 C 1.46668 * 119.99890 * 179.97438 * 16 15 13 19 19 C 1.37874 * 126.23115 * 179.97438 * 18 16 15 20 20 C 1.39838 * 107.08306 * 179.97438 * 19 18 16 21 21 C 1.50700 * 126.06603 * 180.02562 * 20 19 18 22 22 O 1.42903 * 109.47234 * 300.00399 * 21 20 19 23 23 Si 1.86294 * 109.47461 * 180.02562 * 21 20 19 24 24 C 1.35447 * 107.86685 * 0.02562 * 20 19 18 25 25 N 1.35534 * 108.87122 * 359.76589 * 24 20 19 26 26 C 1.53777 * 87.11075 * 334.63710 * 13 12 10 27 27 H 1.08998 * 109.47144 * 300.00036 * 1 2 3 28 28 H 1.08999 * 109.46619 * 60.00302 * 1 2 3 29 29 H 1.08996 * 109.46980 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47596 * 180.02562 * 3 2 1 31 31 H 1.09009 * 109.46889 * 300.00117 * 3 2 1 32 32 H 1.09003 * 109.46990 * 59.99073 * 3 2 1 33 33 H 1.09005 * 109.46836 * 300.00480 * 4 2 1 34 34 H 1.08999 * 109.46845 * 60.00089 * 4 2 1 35 35 H 1.08994 * 109.47403 * 180.02562 * 4 2 1 36 36 H 0.96995 * 120.00015 * 359.72334 * 8 6 5 37 37 H 1.09005 * 109.47306 * 299.99972 * 9 8 6 38 38 H 1.09002 * 109.47518 * 60.00210 * 9 8 6 39 39 H 1.08997 * 113.61427 * 254.53489 * 12 10 9 40 40 H 1.08996 * 113.61303 * 25.42971 * 12 10 9 41 41 H 0.97000 * 120.00197 * 287.50027 * 15 13 12 42 42 H 1.07999 * 126.46041 * 359.93455 * 19 18 16 43 43 H 1.09001 * 109.47276 * 60.00258 * 21 20 19 44 44 H 0.96700 * 114.00360 * 179.97438 * 22 21 20 45 45 H 1.48501 * 109.99922 * 298.68576 * 23 21 20 46 46 H 1.48509 * 109.99843 * 60.00104 * 23 21 20 47 47 H 1.08000 * 125.56395 * 179.97438 * 24 20 19 48 48 H 0.97002 * 125.67244 * 180.26838 * 25 24 20 49 49 H 1.08999 * 113.61622 * 270.81361 * 26 13 12 50 50 H 1.09005 * 113.68704 * 139.92370 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9723 1.3383 7 8 0.9509 -2.5095 0.5041 8 7 2.0680 -2.6657 2.4167 9 6 1.6739 -4.0668 2.5832 10 6 2.2740 -4.6149 3.8795 11 1 3.3227 -4.3461 4.0072 12 6 1.4116 -4.3391 5.1225 13 6 1.7724 -5.7612 5.5892 14 1 0.9407 -6.2971 6.0464 15 7 2.9971 -5.8207 6.3910 16 6 2.9235 -6.0435 7.7183 17 8 1.8397 -6.1957 8.2505 18 6 4.1496 -6.1037 8.5208 19 6 4.2240 -6.3226 9.8800 20 6 5.5787 -6.3008 10.2261 21 6 6.1443 -6.4957 11.6093 22 8 5.6330 -5.4844 12.4799 23 14 8.0022 -6.3760 11.5431 24 6 6.2923 -6.0735 9.0975 25 7 5.4360 -5.9566 8.0535 26 6 1.9890 -6.1088 4.1070 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.6767 -1.7490 -1.2492 34 1 1.6768 -0.2075 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 2.6311 -2.2381 3.0807 37 1 0.5870 -4.1356 2.6289 38 1 2.0396 -4.6501 1.7381 39 1 1.8099 -3.5536 5.7647 40 1 0.3529 -4.2083 4.8991 41 1 3.8609 -5.6997 5.9667 42 1 3.3927 -6.4804 10.5511 43 1 5.8563 -7.4777 11.9846 44 1 5.9553 -5.5485 13.3893 45 1 8.5489 -7.4422 10.6658 46 1 8.4073 -5.0413 11.0333 47 1 7.3683 -6.0008 9.0386 48 1 5.6878 -5.7950 7.1308 49 1 1.0883 -6.4627 3.6054 50 1 2.8523 -6.7501 3.9292 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_10543058.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:57:30 Heat of formation + Delta-G solvation = -79.711612 kcal Electronic energy + Delta-G solvation = -30605.449997 eV Core-core repulsion = 26214.971949 eV Total energy + Delta-G solvation = -4390.478049 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.63094 -41.88063 -41.13181 -39.52448 -38.32092 -37.58539 -36.01590 -35.06500 -34.29924 -32.70345 -30.94061 -29.10002 -28.41035 -28.34193 -26.78656 -26.56730 -24.93206 -23.79227 -22.89920 -21.45144 -21.30043 -20.82718 -20.41908 -19.70132 -19.17312 -18.26850 -17.77316 -17.41201 -17.36326 -17.03436 -16.46901 -16.45171 -15.93591 -15.81831 -15.60283 -15.37518 -15.12014 -15.04100 -14.95563 -14.77967 -14.50206 -14.39060 -14.12353 -13.92870 -13.53243 -13.43475 -13.39742 -13.28137 -13.02448 -12.95797 -12.90798 -12.50546 -12.48383 -12.39036 -12.10027 -11.94090 -11.73922 -11.44571 -11.43289 -11.37772 -11.15378 -10.35235 -10.34176 -10.23606 -9.94467 -9.43194 -4.86623 0.20778 1.13265 1.29869 1.45330 1.71092 1.76368 1.79034 1.96603 2.05097 2.13914 3.06578 3.36077 3.51774 3.57438 3.66029 3.69408 3.70373 3.75303 3.77809 3.88386 3.90323 4.03643 4.17654 4.22972 4.42349 4.48995 4.55063 4.57230 4.59903 4.67100 4.72083 4.72207 4.74640 4.77291 4.80819 4.81818 4.83488 4.87495 4.94026 4.98979 5.04877 5.08387 5.20547 5.22849 5.31518 5.42674 5.48282 5.55206 5.60295 6.20256 6.33964 6.38126 6.95778 7.01235 7.29094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.595 6.595 8 N -0.699 5.699 9 C 0.148 3.852 10 C -0.108 4.108 11 H 0.117 0.883 12 C -0.146 4.146 13 C 0.111 3.889 14 H 0.087 0.913 15 N -0.696 5.696 16 C 0.594 3.406 17 O -0.569 6.569 18 C -0.064 4.064 19 C -0.101 4.101 20 C -0.190 4.190 21 C -0.058 4.058 22 O -0.572 6.572 23 Si 0.786 3.214 24 C 0.034 3.966 25 N -0.514 5.514 26 C -0.120 4.120 27 H 0.060 0.940 28 H 0.087 0.913 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.416 0.584 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.094 0.906 41 H 0.411 0.589 42 H 0.134 0.866 43 H 0.079 0.921 44 H 0.400 0.600 45 H -0.280 1.280 46 H -0.291 1.291 47 H 0.189 0.811 48 H 0.437 0.563 49 H 0.108 0.892 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.067 0.137 -0.061 8.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.359 5.359 9 C 0.026 3.974 10 C -0.127 4.127 11 H 0.135 0.865 12 C -0.184 4.184 13 C 0.006 3.994 14 H 0.105 0.895 15 N -0.347 5.347 16 C 0.382 3.618 17 O -0.448 6.448 18 C -0.177 4.177 19 C -0.128 4.128 20 C -0.196 4.196 21 C -0.167 4.167 22 O -0.381 6.381 23 Si 0.689 3.311 24 C -0.104 4.104 25 N -0.111 5.111 26 C -0.159 4.159 27 H 0.079 0.921 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.252 0.748 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.112 0.888 41 H 0.248 0.752 42 H 0.152 0.848 43 H 0.097 0.903 44 H 0.250 0.750 45 H -0.206 1.206 46 H -0.218 1.218 47 H 0.206 0.794 48 H 0.279 0.721 49 H 0.127 0.873 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.307 0.155 -1.406 7.443 hybrid contribution -0.219 0.185 -0.497 0.574 sum 7.088 0.340 -1.903 7.347 Atomic orbital electron populations 1.22475 0.94127 1.03669 1.03486 1.22354 0.94413 0.92607 0.81568 1.21893 1.02476 0.90893 1.04225 1.22469 1.01658 1.02231 0.97300 1.86308 1.71563 1.23375 1.47287 1.18395 0.78837 0.80795 0.82583 1.90910 1.42285 1.71039 1.44424 1.44733 1.55069 1.13008 1.23117 1.21418 0.99836 0.78138 0.98024 1.22826 1.00907 0.96717 0.92247 0.86516 1.23562 1.01216 0.96715 0.96931 1.21944 0.87417 0.98172 0.91894 0.89461 1.45357 1.10313 1.72626 1.06367 1.17114 0.86829 0.75728 0.82121 1.90857 1.29554 1.51994 1.72411 1.20226 0.84255 1.18733 0.94477 1.21268 0.97046 1.01564 0.92915 1.19250 0.93326 1.12102 0.94923 1.24398 1.11365 0.93520 0.87401 1.86459 1.74102 1.52435 1.25109 0.93809 0.72105 0.76775 0.88373 1.21991 0.96465 1.05187 0.86743 1.41753 1.04248 1.54344 1.10796 1.23266 1.04670 0.95296 0.92651 0.92059 0.89431 0.91806 0.91117 0.88296 0.91283 0.91784 0.89465 0.91858 0.74757 0.91615 0.91042 0.91277 0.88761 0.75172 0.84829 0.90337 0.74989 1.20602 1.21771 0.79385 0.72149 0.87333 0.88755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 2 C 0.13 0.38 1.13 -10.79 -0.01 0.37 16 3 C -0.14 0.27 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 5 O -0.37 -2.00 9.94 -55.42 -0.55 -2.55 16 6 C 0.64 4.03 8.06 129.79 1.05 5.08 16 7 O -0.60 -7.06 11.88 19.82 0.24 -6.82 16 8 N -0.70 0.64 5.56 -590.85 -3.29 -2.64 16 9 C 0.15 -0.52 5.50 86.38 0.47 -0.05 16 10 C -0.11 0.91 3.62 -10.27 -0.04 0.87 16 11 H 0.12 -1.39 8.14 -2.38 -0.02 -1.41 16 12 C -0.15 0.62 7.44 31.18 0.23 0.85 16 13 C 0.11 -0.30 4.33 45.58 0.20 -0.10 16 14 H 0.09 0.24 7.46 -2.39 -0.02 0.22 16 15 N -0.70 1.96 5.26 -443.73 -2.33 -0.38 16 16 C 0.59 3.71 7.79 86.44 0.67 4.39 16 17 O -0.57 -8.96 16.48 -4.34 -0.07 -9.03 16 18 C -0.06 -0.30 7.06 40.35 0.28 -0.02 16 19 C -0.10 -0.89 10.59 22.57 0.24 -0.65 16 20 C -0.19 -0.93 5.47 -20.12 -0.11 -1.04 16 21 C -0.06 -0.02 3.01 71.24 0.21 0.20 16 22 O -0.57 -1.19 12.85 -148.98 -1.92 -3.10 16 23 Si 0.79 -3.61 30.59 68.60 2.10 -1.51 16 24 C 0.03 0.00 10.45 83.48 0.87 0.87 16 25 N -0.51 1.45 5.99 -183.63 -1.10 0.35 16 26 C -0.12 0.99 7.39 31.12 0.23 1.22 16 27 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.06 0.57 5.88 -2.39 -0.01 0.55 16 30 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 31 H 0.10 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 33 H 0.06 0.53 5.88 -2.38 -0.01 0.52 16 34 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 35 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 36 H 0.42 -2.19 8.58 -92.71 -0.80 -2.98 16 37 H 0.07 -0.07 7.87 -2.38 -0.02 -0.09 16 38 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 40 H 0.09 -0.30 7.92 -2.39 -0.02 -0.32 16 41 H 0.41 -4.14 7.83 -92.71 -0.73 -4.87 16 42 H 0.13 1.54 8.06 -2.91 -0.02 1.52 16 43 H 0.08 -0.15 7.96 -2.39 -0.02 -0.17 16 44 H 0.40 -3.49 8.74 -74.06 -0.65 -4.13 16 45 H -0.28 0.25 7.11 99.48 0.71 0.96 16 46 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 47 H 0.19 -0.91 6.19 -2.91 -0.02 -0.93 16 48 H 0.44 -4.97 8.19 -92.71 -0.76 -5.73 16 49 H 0.11 -0.91 8.10 -2.39 -0.02 -0.93 16 50 H 0.09 -0.99 8.14 -2.38 -0.02 -1.01 16 Total: 0.00 -29.72 408.42 -2.67 -32.39 By element: Atomic # 1 Polarization: -17.72 SS G_CDS: -1.89 Total: -19.61 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: 6.15 Total: 12.92 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -6.72 Total: -2.67 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: -2.30 Total: -21.51 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: 2.10 Total: -1.51 kcal Total: -29.72 -2.67 -32.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_10543058.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.323 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds