Wall clock time and date at job start Sat Mar 6 2021 19:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46747 * 2 1 4 4 C 1.53000 * 109.47453 * 239.99943 * 2 1 3 5 5 O 1.45196 * 109.47460 * 119.99726 * 2 1 3 6 6 C 1.34641 * 116.99547 * 59.99904 * 5 2 1 7 7 O 1.21506 * 120.00321 * 0.02562 * 6 5 2 8 8 N 1.34777 * 119.99628 * 180.02562 * 6 5 2 9 9 C 1.46508 * 120.00013 * 180.02562 * 8 6 5 10 10 C 1.52991 * 109.47429 * 180.02562 * 9 8 6 11 11 H 1.09003 * 112.84801 * 316.19512 * 10 9 8 12 12 C 1.53781 * 113.61611 * 87.50116 * 10 9 8 13 13 C 1.54049 * 87.08031 * 139.97702 * 12 10 9 14 14 H 1.08992 * 113.69868 * 220.05225 * 13 12 10 15 15 N 1.46506 * 113.61276 * 89.07129 * 13 12 10 16 16 C 1.34772 * 120.00033 * 107.61836 * 15 13 12 17 17 O 1.21723 * 119.99734 * 0.02562 * 16 15 13 18 18 C 1.46560 * 120.00283 * 180.02562 * 16 15 13 19 19 C 1.40862 * 126.58226 * 180.02562 * 18 16 15 20 20 C 1.40093 * 132.86388 * 359.97438 * 19 18 16 21 21 C 1.36443 * 119.25230 * 180.10692 * 20 19 18 22 22 C 1.50698 * 120.29602 * 179.91139 * 21 20 19 23 23 O 1.42902 * 109.47313 * 239.96024 * 22 21 20 24 24 Si 1.86295 * 109.47172 * 119.95570 * 22 21 20 25 25 C 1.40156 * 119.40986 * 359.87149 * 21 20 19 26 26 C 1.35191 * 120.32234 * 0.07487 * 25 21 20 27 27 N 1.36242 * 120.70182 * 0.02562 * 26 25 21 28 28 N 1.40014 * 132.01052 * 179.97438 * 27 26 25 29 29 C 1.30744 * 109.60334 * 179.76688 * 28 27 26 30 30 C 1.53781 * 113.61529 * 184.99923 * 10 9 8 31 31 H 1.08997 * 109.47727 * 299.99799 * 1 2 3 32 32 H 1.09000 * 109.47067 * 60.00458 * 1 2 3 33 33 H 1.09004 * 109.46829 * 179.97438 * 1 2 3 34 34 H 1.09007 * 109.46745 * 179.97438 * 3 2 1 35 35 H 1.08995 * 109.47382 * 299.99413 * 3 2 1 36 36 H 1.09000 * 109.47121 * 60.00110 * 3 2 1 37 37 H 1.08998 * 109.46994 * 300.00245 * 4 2 1 38 38 H 1.09002 * 109.46800 * 59.99760 * 4 2 1 39 39 H 1.08994 * 109.47352 * 179.97438 * 4 2 1 40 40 H 0.96996 * 120.00851 * 0.02562 * 8 6 5 41 41 H 1.08997 * 109.46666 * 59.99730 * 9 8 6 42 42 H 1.09002 * 109.46731 * 300.00370 * 9 8 6 43 43 H 1.09005 * 113.61471 * 254.53285 * 12 10 9 44 44 H 1.09003 * 113.61469 * 25.43063 * 12 10 9 45 45 H 0.97002 * 119.99888 * 287.62233 * 15 13 12 46 46 H 1.07997 * 120.36939 * 359.97438 * 20 19 18 47 47 H 1.08998 * 109.47187 * 359.95920 * 22 21 20 48 48 H 0.96704 * 113.99450 * 299.99746 * 23 22 21 49 49 H 1.48503 * 110.00412 * 180.02562 * 24 22 21 50 50 H 1.48498 * 110.00380 * 301.32200 * 24 22 21 51 51 H 1.08009 * 119.84174 * 180.02562 * 25 21 20 52 52 H 1.07993 * 119.65210 * 179.97438 * 26 25 21 53 53 H 1.07998 * 125.62988 * 180.23649 * 29 28 27 54 54 H 1.09002 * 113.61445 * 334.56787 * 30 10 9 55 55 H 1.09002 * 113.61408 * 105.38518 * 30 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1855 6 6 1.6522 -1.9722 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0672 -2.6653 2.4172 9 6 1.6741 -4.0668 2.5832 10 6 2.2730 -4.6144 3.8801 11 1 3.3136 -4.3225 4.0221 12 6 1.3899 -4.3744 5.1160 13 6 1.7807 -5.7926 5.5731 14 1 0.9569 -6.3531 6.0148 15 7 2.9985 -5.8323 6.3867 16 6 2.9171 -6.0730 7.7102 17 8 1.8318 -6.2579 8.2295 18 6 4.1352 -6.1121 8.5243 19 6 4.2112 -6.3508 9.9105 20 6 3.2409 -6.6069 10.8880 21 6 3.6318 -6.7999 12.1809 22 6 2.6078 -7.0749 13.2518 23 8 2.6777 -6.0557 14.2509 24 14 2.9527 -8.7321 14.0299 25 6 4.9944 -6.7408 12.5041 26 6 5.9135 -6.4934 11.5441 27 7 5.5328 -6.2973 10.2507 28 7 6.2661 -6.0295 9.0884 29 6 5.4522 -5.9242 8.0707 30 6 2.0207 -6.1169 4.0890 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1299 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9563 0.8900 37 1 1.6767 -1.7489 -1.2492 38 1 1.6767 -0.2074 -2.1392 39 1 3.1300 -0.7208 -1.2494 40 1 2.6262 -2.2363 3.0837 41 1 2.0413 -4.6496 1.7385 42 1 0.5872 -4.1364 2.6275 43 1 1.7610 -3.5865 5.7715 44 1 0.3307 -4.2675 4.8817 45 1 3.8633 -5.6853 5.9727 46 1 2.1952 -6.6489 10.6215 47 1 1.6119 -7.0818 12.8089 48 1 3.5379 -5.9921 14.6883 49 1 1.9493 -9.0156 15.0873 50 1 2.9143 -9.7969 12.9955 51 1 5.3116 -6.8929 13.5253 52 1 6.9604 -6.4498 11.8052 53 1 5.7435 -5.7240 7.0502 54 1 1.1340 -6.4865 3.5740 55 1 2.9006 -6.7359 3.9141 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_11618758.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:57:40 Heat of formation + Delta-G solvation = -21.430528 kcal Electronic energy + Delta-G solvation = -37185.247811 eV Core-core repulsion = 32191.655068 eV Total energy + Delta-G solvation = -4993.592742 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -43.31294 -41.85202 -41.14654 -39.60453 -39.19252 -38.26818 -37.21060 -35.93654 -34.97600 -34.32150 -33.90063 -32.09204 -30.44400 -28.94761 -28.38875 -28.31943 -27.27702 -26.69074 -25.20071 -24.39167 -23.63945 -23.05766 -22.79793 -21.44371 -21.22661 -20.24723 -19.21637 -19.08179 -18.47509 -17.83842 -17.73278 -17.48701 -17.32969 -17.05088 -16.93987 -16.51362 -16.33518 -15.96466 -15.86190 -15.76730 -15.60880 -15.39466 -15.36566 -14.90204 -14.77855 -14.51116 -14.47107 -14.23573 -14.01614 -13.86669 -13.51001 -13.45322 -13.37437 -13.22951 -13.13728 -12.95862 -12.93136 -12.88113 -12.47581 -12.40668 -12.36038 -12.24189 -12.03031 -11.96148 -11.64650 -11.56813 -11.41622 -11.29951 -11.11683 -11.02132 -10.79148 -10.26619 -10.22762 -10.07584 -8.80911 -5.08020 -0.57633 -0.10912 0.99764 1.04871 1.16990 1.19826 1.67236 1.74575 1.95627 2.07196 2.17263 2.45761 3.07972 3.11336 3.23354 3.45440 3.46617 3.59105 3.59926 3.72578 3.74104 3.75835 3.77681 3.84809 3.87314 3.92624 3.96691 4.18545 4.25476 4.35655 4.38847 4.47485 4.54903 4.59077 4.60797 4.62210 4.71591 4.74368 4.76591 4.78731 4.81637 4.85030 4.85634 4.91148 4.99414 5.06563 5.09172 5.11307 5.16137 5.19025 5.25010 5.26535 5.28437 5.35836 5.57710 5.63716 5.67573 6.28587 6.38274 6.58267 6.76080 7.27440 7.32776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.698 5.698 9 C 0.148 3.852 10 C -0.107 4.107 11 H 0.119 0.881 12 C -0.146 4.146 13 C 0.115 3.885 14 H 0.081 0.919 15 N -0.695 5.695 16 C 0.600 3.400 17 O -0.596 6.596 18 C -0.347 4.347 19 C 0.151 3.849 20 C -0.136 4.136 21 C -0.053 4.053 22 C -0.077 4.077 23 O -0.547 6.547 24 Si 0.816 3.184 25 C -0.146 4.146 26 C 0.115 3.885 27 N -0.273 5.273 28 N -0.337 5.337 29 C 0.132 3.868 30 C -0.122 4.122 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.416 0.584 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.414 0.586 46 H 0.136 0.864 47 H 0.105 0.895 48 H 0.401 0.599 49 H -0.290 1.290 50 H -0.303 1.303 51 H 0.222 0.778 52 H 0.214 0.786 53 H 0.235 0.765 54 H 0.105 0.895 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.433 0.373 3.853 9.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.359 5.359 9 C 0.026 3.974 10 C -0.126 4.126 11 H 0.137 0.863 12 C -0.184 4.184 13 C 0.009 3.991 14 H 0.099 0.901 15 N -0.346 5.346 16 C 0.390 3.610 17 O -0.478 6.478 18 C -0.362 4.362 19 C 0.029 3.971 20 C -0.156 4.156 21 C -0.059 4.059 22 C -0.185 4.185 23 O -0.355 6.355 24 Si 0.720 3.280 25 C -0.167 4.167 26 C -0.010 4.010 27 N -0.037 5.037 28 N -0.158 5.158 29 C -0.048 4.048 30 C -0.160 4.160 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.253 0.747 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.252 0.748 46 H 0.154 0.846 47 H 0.122 0.878 48 H 0.252 0.748 49 H -0.217 1.217 50 H -0.231 1.231 51 H 0.239 0.761 52 H 0.231 0.769 53 H 0.251 0.749 54 H 0.123 0.877 55 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.739 -0.562 3.973 8.717 hybrid contribution -1.212 0.507 -1.007 1.656 sum 6.527 -0.055 2.965 7.169 Atomic orbital electron populations 1.22476 0.94176 1.03650 1.03462 1.22342 0.94375 0.92615 0.81594 1.21893 1.02499 0.90887 1.04202 1.22469 1.01683 1.02231 0.97294 1.86309 1.71559 1.23385 1.47262 1.18395 0.78826 0.80784 0.82615 1.90906 1.42337 1.71027 1.44450 1.44748 1.55253 1.12940 1.22925 1.21422 0.99730 0.78117 0.98113 1.22810 1.00929 0.96672 0.92141 0.86285 1.23574 1.00736 0.97033 0.97103 1.21843 0.87825 0.97856 0.91560 0.90077 1.45187 1.10231 1.72632 1.06559 1.17060 0.86962 0.74869 0.82109 1.90759 1.30667 1.53181 1.73186 1.19690 0.94732 1.29667 0.92118 1.19474 0.85459 0.97473 0.94667 1.20636 0.99506 1.03609 0.91806 1.20768 0.96700 0.94173 0.94301 1.25331 0.99152 1.04213 0.89823 1.86588 1.40592 1.55976 1.52385 0.93875 0.86642 0.70005 0.77523 1.21363 0.89607 1.03042 1.02645 1.22479 1.03977 0.96714 0.77840 1.46381 1.05203 1.43692 1.08414 1.77558 1.18153 1.30154 0.89892 1.24586 0.88826 0.91480 0.99942 1.23265 1.04481 0.95270 0.93024 0.92061 0.89452 0.91834 0.91093 0.88315 0.91285 0.91792 0.89494 0.91833 0.74712 0.91055 0.91781 0.91374 0.89141 0.74829 0.84579 0.87760 0.74789 1.21678 1.23081 0.76107 0.76909 0.74899 0.87698 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.74 8.37 71.98 0.60 -0.14 16 2 C 0.13 0.45 1.13 -10.79 -0.01 0.44 16 3 C -0.14 0.21 8.85 71.98 0.64 0.85 16 4 C -0.18 -0.65 8.37 71.98 0.60 -0.04 16 5 O -0.37 -2.23 9.94 -55.50 -0.55 -2.78 16 6 C 0.64 4.53 8.06 129.79 1.05 5.58 16 7 O -0.60 -7.52 11.88 19.82 0.24 -7.28 16 8 N -0.70 -0.04 5.56 -590.85 -3.29 -3.32 16 9 C 0.15 -0.34 5.51 86.37 0.48 0.13 16 10 C -0.11 0.74 3.63 -10.27 -0.04 0.70 16 11 H 0.12 -1.24 8.14 -2.39 -0.02 -1.26 16 12 C -0.15 0.39 7.44 31.21 0.23 0.62 16 13 C 0.11 -0.10 4.34 45.61 0.20 0.10 16 14 H 0.08 0.39 7.46 -2.39 -0.02 0.38 16 15 N -0.70 0.52 5.26 -443.65 -2.33 -1.81 16 16 C 0.60 4.70 7.78 86.41 0.67 5.38 16 17 O -0.60 -9.75 15.31 -4.42 -0.07 -9.82 16 18 C -0.35 -2.11 6.17 -19.90 -0.12 -2.23 16 19 C 0.15 1.06 6.76 39.50 0.27 1.33 16 20 C -0.14 -0.82 9.35 22.30 0.21 -0.61 16 21 C -0.05 0.09 4.53 -19.82 -0.09 0.00 16 22 C -0.08 0.21 2.84 71.24 0.20 0.41 16 23 O -0.55 1.91 12.88 -148.98 -1.92 -0.01 16 24 Si 0.82 -4.31 31.96 68.60 2.19 -2.12 16 25 C -0.15 1.37 8.38 22.03 0.18 1.55 16 26 C 0.12 -0.68 11.18 83.31 0.93 0.26 16 27 N -0.27 -0.80 3.86 -187.27 -0.72 -1.52 16 28 N -0.34 -1.29 12.57 -56.62 -0.71 -2.00 16 29 C 0.13 0.06 11.44 85.42 0.98 1.03 16 30 C -0.12 0.78 7.38 31.12 0.23 1.01 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.06 0.60 5.88 -2.39 -0.01 0.59 16 34 H 0.07 -0.14 8.14 -2.38 -0.02 -0.16 16 35 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 36 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 0.57 5.88 -2.39 -0.01 0.56 16 38 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 40 H 0.42 -1.80 8.58 -92.71 -0.80 -2.59 16 41 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.06 0.02 7.84 -2.39 -0.02 0.00 16 43 H 0.07 -0.06 8.14 -2.38 -0.02 -0.08 16 44 H 0.09 -0.15 7.90 -2.39 -0.02 -0.16 16 45 H 0.41 -3.23 7.62 -92.71 -0.71 -3.94 16 46 H 0.14 1.37 7.01 -2.91 -0.02 1.35 16 47 H 0.10 0.09 7.71 -2.39 -0.02 0.07 16 48 H 0.40 -5.88 8.08 -74.05 -0.60 -6.48 16 49 H -0.29 -0.57 7.11 99.48 0.71 0.14 16 50 H -0.30 -0.86 7.11 99.48 0.71 -0.16 16 51 H 0.22 -4.68 7.31 -2.91 -0.02 -4.70 16 52 H 0.21 -2.86 8.06 -2.91 -0.02 -2.89 16 53 H 0.23 -2.25 7.46 -2.91 -0.02 -2.27 16 54 H 0.10 -0.69 8.10 -2.39 -0.02 -0.71 16 55 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 Total: 0.00 -36.75 449.38 -1.06 -37.82 By element: Atomic # 1 Polarization: -22.42 SS G_CDS: -1.11 Total: -23.53 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 7.21 Total: 16.38 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -7.05 Total: -8.65 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -2.30 Total: -19.89 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.19 Total: -2.12 kcal Total: -36.75 -1.06 -37.82 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_11618758.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.384 kcal (2) G-P(sol) polarization free energy of solvation -36.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds