Wall clock time and date at job start Sat Mar 6 2021 19:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47130 * 2 1 4 4 C 1.52999 * 109.47257 * 239.99754 * 2 1 3 5 5 O 1.45202 * 109.47182 * 119.99570 * 2 1 3 6 6 C 1.34638 * 116.99989 * 60.00142 * 5 2 1 7 7 O 1.21515 * 119.99738 * 359.97438 * 6 5 2 8 8 N 1.34771 * 120.00503 * 179.97438 * 6 5 2 9 9 C 1.46499 * 120.00213 * 179.97438 * 8 6 5 10 10 C 1.53007 * 109.46719 * 180.02562 * 9 8 6 11 11 H 1.08993 * 112.85052 * 316.19666 * 10 9 8 12 12 C 1.53783 * 113.61558 * 87.50531 * 10 9 8 13 13 C 1.53782 * 87.07898 * 139.97688 * 12 10 9 14 14 H 1.09006 * 113.68449 * 220.00620 * 13 12 10 15 15 N 1.46495 * 113.61526 * 89.11883 * 13 12 10 16 16 C 1.34781 * 120.00106 * 107.49814 * 15 13 12 17 17 O 1.21277 * 119.99785 * 359.97438 * 16 15 13 18 18 C 1.50696 * 119.99669 * 180.02562 * 16 15 13 19 19 C 1.50709 * 109.47089 * 179.97438 * 18 16 15 20 20 C 1.38227 * 119.99720 * 89.99744 * 19 18 16 21 21 C 1.38239 * 120.00170 * 179.97438 * 20 19 18 22 22 C 1.38237 * 119.99584 * 359.97438 * 21 20 19 23 23 C 1.50699 * 119.99948 * 180.02562 * 22 21 20 24 24 O 1.42905 * 109.46972 * 64.99974 * 23 22 21 25 25 Si 1.86295 * 109.47097 * 184.99614 * 23 22 21 26 26 C 1.38236 * 120.00213 * 0.26890 * 22 21 20 27 27 C 1.38232 * 119.99742 * 269.98167 * 19 18 16 28 28 C 1.53779 * 87.08300 * 334.56403 * 13 12 10 29 29 H 1.09001 * 109.47073 * 300.00134 * 1 2 3 30 30 H 1.09000 * 109.47292 * 60.00071 * 1 2 3 31 31 H 1.09003 * 109.47070 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47232 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46996 * 299.99649 * 3 2 1 34 34 H 1.09001 * 109.47252 * 59.99976 * 3 2 1 35 35 H 1.08993 * 109.47006 * 299.99933 * 4 2 1 36 36 H 1.09000 * 109.46826 * 59.99890 * 4 2 1 37 37 H 1.08997 * 109.47020 * 180.02562 * 4 2 1 38 38 H 0.97004 * 119.99523 * 0.02562 * 8 6 5 39 39 H 1.08997 * 109.46956 * 60.00457 * 9 8 6 40 40 H 1.08999 * 109.47242 * 299.99653 * 9 8 6 41 41 H 1.09003 * 113.61402 * 25.42901 * 12 10 9 42 42 H 1.08994 * 113.61605 * 254.52553 * 12 10 9 43 43 H 0.96998 * 119.99504 * 287.50121 * 15 13 12 44 44 H 1.08999 * 109.47373 * 60.00454 * 18 16 15 45 45 H 1.08995 * 109.47399 * 300.00138 * 18 16 15 46 46 H 1.08000 * 120.00305 * 359.97438 * 20 19 18 47 47 H 1.07994 * 120.00273 * 179.97438 * 21 20 19 48 48 H 1.09000 * 109.47247 * 304.99910 * 23 22 21 49 49 H 0.96696 * 114.00036 * 179.97438 * 24 23 22 50 50 H 1.48504 * 110.00018 * 178.68145 * 25 23 22 51 51 H 1.48496 * 110.00262 * 300.00047 * 25 23 22 52 52 H 1.07991 * 120.00435 * 179.72655 * 26 22 21 53 53 H 1.08002 * 120.00539 * 359.97438 * 27 19 18 54 54 H 1.09002 * 113.60835 * 139.98116 * 28 13 12 55 55 H 1.08994 * 113.61813 * 270.79771 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9509 -2.5094 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6739 -4.0667 2.5833 10 6 2.2742 -4.6147 3.8797 11 1 3.3150 -4.3236 4.0203 12 6 1.3927 -4.3739 5.1166 13 6 1.7825 -5.7900 5.5725 14 1 0.9588 -6.3494 6.0161 15 7 3.0005 -5.8303 6.3855 16 6 2.9194 -6.0688 7.7095 17 8 1.8380 -6.2495 8.2280 18 6 4.1724 -6.1097 8.5458 19 6 3.8093 -6.3907 9.9813 20 6 3.7413 -7.6949 10.4343 21 6 3.4088 -7.9527 11.7511 22 6 3.1449 -6.9062 12.6149 23 6 2.7829 -7.1872 14.0506 24 8 3.8963 -7.7901 14.7132 25 14 2.3427 -5.5907 14.9038 26 6 3.2079 -5.6022 12.1605 27 6 3.5447 -5.3442 10.8448 28 6 2.0208 -6.1170 4.0889 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2491 36 1 1.6766 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 2.6276 -2.2367 3.0829 39 1 2.0397 -4.6499 1.7382 40 1 0.5870 -4.1355 2.6291 41 1 0.3334 -4.2663 4.8837 42 1 1.7652 -3.5864 5.7716 43 1 3.8653 -5.6854 5.9708 44 1 4.6833 -5.1490 8.4821 45 1 4.8303 -6.8963 8.1764 46 1 3.9479 -8.5124 9.7596 47 1 3.3553 -8.9716 12.1050 48 1 1.9296 -7.8646 14.0843 49 1 3.7345 -7.9986 15.6435 50 1 1.9531 -5.8580 16.3117 51 1 3.4979 -4.6585 14.8647 52 1 2.9974 -4.7848 12.8342 53 1 3.5984 -4.3252 10.4909 54 1 2.9005 -6.7366 3.9143 55 1 1.1336 -6.4873 3.5754 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_12335836.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:57:57 Heat of formation + Delta-G solvation = -101.073970 kcal Electronic energy + Delta-G solvation = -33460.056934 eV Core-core repulsion = 28850.314696 eV Total energy + Delta-G solvation = -4609.742238 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 377.208 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.84706 -41.38619 -40.52433 -39.44856 -38.28117 -37.74484 -35.92184 -34.95623 -34.29730 -33.78620 -31.93244 -30.04468 -28.76544 -28.37716 -28.30561 -26.67228 -25.81261 -24.16196 -23.81221 -22.86344 -22.34434 -21.33231 -21.20818 -20.21254 -19.11801 -18.58377 -18.16486 -17.65674 -17.59894 -17.31544 -16.93453 -16.90323 -16.45995 -16.17898 -15.95507 -15.76203 -15.70824 -15.33879 -15.22945 -14.86232 -14.78909 -14.57425 -14.47185 -14.34405 -13.99844 -13.91892 -13.52239 -13.47000 -13.35988 -13.23044 -13.03909 -12.98496 -12.92142 -12.87312 -12.80387 -12.45761 -12.34714 -12.24936 -12.00005 -11.92274 -11.73040 -11.60297 -11.40309 -11.26908 -11.10162 -10.94788 -10.51353 -10.21054 -10.00063 -9.86458 -9.60054 -4.94754 0.24432 0.46563 1.18241 1.27222 1.55781 1.66911 1.75932 1.89290 2.16669 2.75535 3.12899 3.39939 3.48766 3.61500 3.66009 3.73841 3.77545 3.78939 3.85439 3.86736 3.92136 3.93893 4.05989 4.07904 4.27830 4.31160 4.46498 4.48929 4.49855 4.56588 4.60363 4.62686 4.63713 4.73101 4.74882 4.75608 4.81421 4.82834 4.86613 4.86977 4.90523 5.01861 5.03938 5.08920 5.09583 5.12714 5.21175 5.26214 5.28377 5.37348 5.38680 5.55158 5.59285 5.59342 5.67248 6.02331 6.39894 6.56051 6.60348 7.32441 7.34361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.640 3.360 7 O -0.597 6.597 8 N -0.698 5.698 9 C 0.147 3.853 10 C -0.107 4.107 11 H 0.120 0.880 12 C -0.145 4.145 13 C 0.114 3.886 14 H 0.079 0.921 15 N -0.701 5.701 16 C 0.516 3.484 17 O -0.577 6.577 18 C -0.097 4.097 19 C -0.072 4.072 20 C -0.116 4.116 21 C -0.109 4.109 22 C -0.091 4.091 23 C -0.087 4.087 24 O -0.557 6.557 25 Si 0.759 3.241 26 C -0.127 4.127 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.098 0.902 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.086 0.914 37 H 0.063 0.937 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.418 0.582 44 H 0.133 0.867 45 H 0.130 0.870 46 H 0.135 0.865 47 H 0.125 0.875 48 H 0.089 0.911 49 H 0.394 0.606 50 H -0.283 1.283 51 H -0.295 1.295 52 H 0.136 0.864 53 H 0.143 0.857 54 H 0.093 0.907 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.279 2.210 -2.028 4.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.393 3.607 7 O -0.488 6.488 8 N -0.358 5.358 9 C 0.025 3.975 10 C -0.126 4.126 11 H 0.138 0.862 12 C -0.184 4.184 13 C 0.008 3.992 14 H 0.097 0.903 15 N -0.353 5.353 16 C 0.304 3.696 17 O -0.455 6.455 18 C -0.137 4.137 19 C -0.073 4.073 20 C -0.134 4.134 21 C -0.127 4.127 22 C -0.091 4.091 23 C -0.196 4.196 24 O -0.367 6.367 25 Si 0.664 3.336 26 C -0.145 4.145 27 C -0.128 4.128 28 C -0.163 4.163 29 H 0.080 0.920 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.116 0.884 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.082 0.918 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.256 0.744 44 H 0.151 0.849 45 H 0.148 0.852 46 H 0.153 0.847 47 H 0.143 0.857 48 H 0.107 0.893 49 H 0.244 0.756 50 H -0.210 1.210 51 H -0.222 1.222 52 H 0.153 0.847 53 H 0.161 0.839 54 H 0.111 0.889 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 2.605 2.488 -2.062 4.150 hybrid contribution 0.820 -0.802 0.914 1.467 sum 3.425 1.685 -1.148 3.986 Atomic orbital electron populations 1.22477 0.94169 1.03649 1.03475 1.22335 0.94373 0.92603 0.81574 1.21892 1.02496 0.90885 1.04213 1.22471 1.01679 1.02226 0.97331 1.86307 1.71556 1.23376 1.47224 1.18411 0.78833 0.80787 0.82635 1.90911 1.42331 1.71054 1.44494 1.44735 1.55181 1.12922 1.22961 1.21430 0.99683 0.78131 0.98232 1.22821 1.00976 0.96642 0.92140 0.86217 1.23508 1.00580 0.97227 0.97052 1.21766 0.88262 0.97658 0.91532 0.90260 1.45560 1.10149 1.72382 1.07240 1.20963 0.91068 0.74944 0.82639 1.90748 1.31699 1.50278 1.72821 1.20751 0.95497 1.07584 0.89833 1.19601 0.99193 0.93272 0.95203 1.21253 0.99486 0.96911 0.95719 1.21117 0.98813 0.99169 0.93614 1.19483 1.01448 0.93936 0.94270 1.25017 0.91664 1.08981 0.93900 1.86542 1.39019 1.81860 1.29303 0.94027 0.84956 0.75822 0.78749 1.21149 1.00614 0.95701 0.97025 1.21213 0.98679 0.99909 0.92985 1.23261 1.04285 0.95272 0.93482 0.91999 0.89502 0.91836 0.91094 0.88378 0.91214 0.91812 0.89529 0.91840 0.74645 0.91285 0.91885 0.89456 0.90950 0.74429 0.84929 0.85249 0.84722 0.85748 0.89331 0.75598 1.21028 1.22233 0.84670 0.83934 0.88869 0.88090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.58 8.37 71.98 0.60 0.03 16 2 C 0.13 0.33 1.13 -10.80 -0.01 0.32 16 3 C -0.14 0.34 8.85 71.98 0.64 0.98 16 4 C -0.18 -0.51 8.37 71.98 0.60 0.10 16 5 O -0.37 -1.79 9.94 -55.47 -0.55 -2.35 16 6 C 0.64 3.76 8.06 129.79 1.05 4.81 16 7 O -0.60 -6.94 11.88 19.79 0.24 -6.70 16 8 N -0.70 1.01 5.56 -590.85 -3.28 -2.27 16 9 C 0.15 -0.55 5.51 86.38 0.48 -0.08 16 10 C -0.11 0.98 3.63 -10.26 -0.04 0.94 16 11 H 0.12 -1.53 8.14 -2.39 -0.02 -1.55 16 12 C -0.14 0.81 7.43 31.12 0.23 1.04 16 13 C 0.11 -0.49 4.32 45.52 0.20 -0.30 16 14 H 0.08 0.14 7.46 -2.38 -0.02 0.12 16 15 N -0.70 4.56 5.26 -440.04 -2.32 2.25 16 16 C 0.52 -0.16 7.82 87.65 0.69 0.52 16 17 O -0.58 -5.98 15.63 -3.02 -0.05 -6.02 16 18 C -0.10 0.54 5.83 29.10 0.17 0.71 16 19 C -0.07 -0.14 4.37 -19.87 -0.09 -0.23 16 20 C -0.12 -0.44 9.70 22.27 0.22 -0.23 16 21 C -0.11 -0.66 9.69 22.27 0.22 -0.45 16 22 C -0.09 -0.54 5.38 -19.87 -0.11 -0.65 16 23 C -0.09 -0.24 2.79 71.24 0.20 -0.04 16 24 O -0.56 -2.62 12.81 -148.98 -1.91 -4.52 16 25 Si 0.76 0.48 29.84 68.60 2.05 2.53 16 26 C -0.13 -0.56 8.67 22.27 0.19 -0.36 16 27 C -0.11 -0.29 9.70 22.27 0.22 -0.08 16 28 C -0.12 1.07 7.39 31.12 0.23 1.30 16 29 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.09 -0.02 8.14 -2.39 -0.02 -0.04 16 31 H 0.06 0.54 5.88 -2.39 -0.01 0.53 16 32 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 33 H 0.10 -0.55 8.14 -2.38 -0.02 -0.57 16 34 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 35 H 0.06 0.52 5.88 -2.39 -0.01 0.51 16 36 H 0.09 -0.05 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 38 H 0.42 -2.55 8.58 -92.71 -0.80 -3.35 16 39 H 0.07 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.06 -0.06 7.84 -2.39 -0.02 -0.08 16 41 H 0.09 -0.33 7.90 -2.39 -0.02 -0.35 16 42 H 0.07 -0.35 8.14 -2.39 -0.02 -0.36 16 43 H 0.42 -5.56 8.70 -92.71 -0.81 -6.36 16 44 H 0.13 -1.46 8.08 -2.39 -0.02 -1.48 16 45 H 0.13 -1.34 8.09 -2.39 -0.02 -1.36 16 46 H 0.13 0.01 8.06 -2.91 -0.02 -0.01 16 47 H 0.12 0.57 8.06 -2.91 -0.02 0.55 16 48 H 0.09 -0.04 7.96 -2.39 -0.02 -0.06 16 49 H 0.39 -1.42 8.74 -74.06 -0.65 -2.07 16 50 H -0.28 -1.15 7.11 99.48 0.71 -0.44 16 51 H -0.29 -2.09 7.05 99.48 0.70 -1.38 16 52 H 0.14 0.15 4.87 -2.92 -0.01 0.14 16 53 H 0.14 -0.29 8.06 -2.91 -0.02 -0.32 16 54 H 0.09 -1.00 8.14 -2.39 -0.02 -1.02 16 55 H 0.10 -0.81 8.10 -2.39 -0.02 -0.83 16 Total: 0.00 -27.52 443.95 -1.45 -28.97 By element: Atomic # 1 Polarization: -18.92 SS G_CDS: -1.30 Total: -20.22 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 5.67 Total: 8.34 kcal Atomic # 7 Polarization: 5.57 SS G_CDS: -5.60 Total: -0.03 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -2.27 Total: -19.59 kcal Atomic # 14 Polarization: 0.48 SS G_CDS: 2.05 Total: 2.53 kcal Total: -27.52 -1.45 -28.97 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_12335836.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.103 kcal (2) G-P(sol) polarization free energy of solvation -27.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds