Wall clock time and date at job start Sat Mar 6 2021 19:59:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47204 * 2 1 4 4 C 1.53003 * 109.47445 * 240.00295 * 2 1 3 5 5 O 1.45204 * 109.47287 * 120.00115 * 2 1 3 6 6 C 1.34628 * 117.00008 * 60.00082 * 5 2 1 7 7 O 1.21517 * 120.00166 * 0.02562 * 6 5 2 8 8 N 1.34772 * 120.00211 * 180.02562 * 6 5 2 9 9 C 1.46506 * 120.00508 * 180.02562 * 8 6 5 10 10 C 1.52990 * 109.47424 * 180.02562 * 9 8 6 11 11 H 1.08998 * 112.84978 * 316.19412 * 10 9 8 12 12 C 1.54058 * 113.69810 * 87.46712 * 10 9 8 13 13 C 1.53785 * 86.98440 * 139.98906 * 12 10 9 14 14 H 1.09001 * 113.60848 * 219.98175 * 13 12 10 15 15 N 1.46502 * 113.61144 * 89.16297 * 13 12 10 16 16 C 1.34781 * 119.99585 * 105.86306 * 15 13 12 17 17 O 1.21507 * 120.00127 * 359.97438 * 16 15 13 18 18 C 1.48175 * 119.99485 * 179.97438 * 16 15 13 19 19 N 1.32716 * 119.72383 * 359.97438 * 18 16 15 20 20 C 1.31519 * 121.64074 * 179.97438 * 19 18 16 21 21 C 1.38553 * 120.90388 * 0.02562 * 20 19 18 22 22 C 1.50706 * 120.32466 * 179.97438 * 21 20 19 23 23 O 1.42898 * 109.47270 * 245.02309 * 22 21 20 24 24 Si 1.86299 * 109.46786 * 5.02213 * 22 21 20 25 25 C 1.38628 * 119.35502 * 359.97438 * 21 20 19 26 26 C 1.38586 * 118.48302 * 0.28010 * 25 21 20 27 27 C 1.53783 * 113.61446 * 185.00188 * 10 9 8 28 28 H 1.09004 * 109.47575 * 299.99711 * 1 2 3 29 29 H 1.09004 * 109.47139 * 59.99893 * 1 2 3 30 30 H 1.09006 * 109.46844 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47609 * 179.97438 * 3 2 1 32 32 H 1.08995 * 109.47232 * 300.00368 * 3 2 1 33 33 H 1.09004 * 109.46619 * 59.99704 * 3 2 1 34 34 H 1.08997 * 109.46970 * 300.00023 * 4 2 1 35 35 H 1.08995 * 109.46846 * 59.99720 * 4 2 1 36 36 H 1.08998 * 109.47052 * 179.97438 * 4 2 1 37 37 H 0.97002 * 120.00021 * 0.02562 * 8 6 5 38 38 H 1.09002 * 109.46982 * 59.99536 * 9 8 6 39 39 H 1.09008 * 109.46536 * 300.00176 * 9 8 6 40 40 H 1.09001 * 113.60744 * 25.48254 * 12 10 9 41 41 H 1.09001 * 113.69447 * 254.50628 * 12 10 9 42 42 H 0.96993 * 119.99734 * 285.85308 * 15 13 12 43 43 H 1.08004 * 119.54899 * 180.02562 * 20 19 18 44 44 H 1.08999 * 109.47132 * 125.01892 * 22 21 20 45 45 H 0.96699 * 113.99735 * 60.00399 * 23 22 21 46 46 H 1.48499 * 109.99955 * 58.68125 * 24 22 21 47 47 H 1.48504 * 109.99894 * 179.97438 * 24 22 21 48 48 H 1.08002 * 120.75504 * 179.97438 * 25 21 20 49 49 H 1.08001 * 120.46602 * 179.70217 * 26 25 21 50 50 H 1.08993 * 113.62042 * 105.38576 * 27 10 9 51 51 H 1.09006 * 113.61288 * 334.47556 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3383 7 8 0.9516 -2.5097 0.5035 8 7 2.0673 -2.6654 2.4171 9 6 1.6741 -4.0669 2.5831 10 6 2.2731 -4.6145 3.8800 11 1 3.3136 -4.3226 4.0220 12 6 1.3902 -4.3744 5.1195 13 6 1.7824 -5.7907 5.5726 14 1 0.9592 -6.3508 6.0161 15 7 3.0007 -5.8305 6.3853 16 6 2.9176 -6.0388 7.7143 17 8 1.8322 -6.1931 8.2384 18 6 4.1498 -6.0796 8.5362 19 7 5.3324 -5.9109 7.9580 20 6 6.4497 -5.9394 8.6512 21 6 6.4323 -6.1489 10.0207 22 6 7.7206 -6.1797 10.8021 23 8 7.9174 -7.4869 11.3448 24 14 9.1413 -5.7552 9.6742 25 6 5.2184 -6.3298 10.6651 26 6 4.0576 -6.3001 9.9086 27 6 2.0208 -6.1170 4.0888 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.6765 1.9563 0.8900 34 1 1.6767 -1.7488 -1.2493 35 1 1.6767 -0.2073 -2.1392 36 1 3.1300 -0.7207 -1.2494 37 1 2.6262 -2.2363 3.0837 38 1 2.0414 -4.6498 1.7383 39 1 0.5872 -4.1365 2.6274 40 1 0.3307 -4.2681 4.8867 41 1 1.7615 -3.5874 5.7759 42 1 3.8670 -5.7070 5.9669 43 1 7.3937 -5.7977 8.1460 44 1 7.6711 -5.4532 11.6132 45 1 7.9712 -8.1854 10.6783 46 1 8.9328 -4.4110 9.0785 47 1 10.4176 -5.7816 10.4329 48 1 5.1786 -6.4951 11.7317 49 1 3.0949 -6.4422 10.3771 50 1 2.9007 -6.7360 3.9139 51 1 1.1332 -6.4863 3.5750 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_13287726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:59:39 Heat of formation + Delta-G solvation = -85.679050 kcal Electronic energy + Delta-G solvation = -31979.065782 eV Core-core repulsion = 27460.102825 eV Total energy + Delta-G solvation = -4518.962957 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 364.188 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.00711 -41.79939 -40.93757 -39.53832 -38.29533 -37.85307 -35.96492 -35.02923 -34.39001 -33.46984 -32.93071 -29.24237 -28.38148 -28.31659 -27.71173 -26.71255 -25.06571 -24.60056 -23.65216 -22.84199 -22.10930 -21.23327 -20.27673 -19.34503 -19.12482 -18.57804 -17.71319 -17.70135 -17.32681 -16.96860 -16.66522 -16.45886 -16.32083 -16.29191 -15.92584 -15.73424 -15.72644 -15.37122 -15.01132 -14.93192 -14.53223 -14.42276 -14.33210 -14.29816 -13.88847 -13.56335 -13.45433 -13.37114 -13.22998 -12.96467 -12.92702 -12.87772 -12.54661 -12.46964 -12.35753 -12.19106 -12.03131 -11.68099 -11.48786 -11.41131 -11.30781 -11.11524 -11.06495 -10.70304 -10.56712 -10.36216 -10.21641 -10.06206 -5.00444 -0.61318 0.06886 1.17431 1.25103 1.51129 1.64604 1.75046 1.90270 1.98743 2.64926 2.92654 3.11482 3.42897 3.43291 3.52012 3.58721 3.64254 3.73093 3.75015 3.78149 3.78681 3.82984 3.93123 3.93949 4.12024 4.24886 4.40692 4.46819 4.54121 4.57689 4.59722 4.60837 4.69540 4.74935 4.77788 4.79930 4.82450 4.85304 4.86097 4.90446 4.98280 4.98982 5.05755 5.09939 5.16101 5.25056 5.25683 5.35428 5.37118 5.54580 5.59161 6.26099 6.38345 6.59973 6.71822 7.03460 7.33046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.641 3.359 7 O -0.596 6.596 8 N -0.699 5.699 9 C 0.149 3.851 10 C -0.110 4.110 11 H 0.113 0.887 12 C -0.144 4.144 13 C 0.108 3.892 14 H 0.090 0.910 15 N -0.681 5.681 16 C 0.571 3.429 17 O -0.566 6.566 18 C 0.064 3.936 19 N -0.457 5.457 20 C 0.103 3.897 21 C -0.143 4.143 22 C -0.070 4.070 23 O -0.551 6.551 24 Si 0.775 3.225 25 C -0.054 4.054 26 C -0.116 4.116 27 C -0.120 4.120 28 H 0.060 0.940 29 H 0.087 0.913 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.062 0.938 37 H 0.416 0.584 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.096 0.904 41 H 0.067 0.933 42 H 0.421 0.579 43 H 0.190 0.810 44 H 0.118 0.882 45 H 0.398 0.602 46 H -0.278 1.278 47 H -0.297 1.297 48 H 0.159 0.841 49 H 0.147 0.853 50 H 0.092 0.908 51 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.431 -0.295 -1.221 5.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.090 3.910 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.394 3.606 7 O -0.487 6.487 8 N -0.359 5.359 9 C 0.027 3.973 10 C -0.129 4.129 11 H 0.131 0.869 12 C -0.183 4.183 13 C 0.003 3.997 14 H 0.108 0.892 15 N -0.331 5.331 16 C 0.357 3.643 17 O -0.445 6.445 18 C -0.073 4.073 19 N -0.168 5.168 20 C -0.056 4.056 21 C -0.145 4.145 22 C -0.180 4.180 23 O -0.359 6.359 24 Si 0.680 3.320 25 C -0.080 4.080 26 C -0.137 4.137 27 C -0.159 4.159 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.252 0.748 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.115 0.885 41 H 0.086 0.914 42 H 0.259 0.741 43 H 0.206 0.794 44 H 0.135 0.865 45 H 0.248 0.752 46 H -0.205 1.205 47 H -0.225 1.225 48 H 0.177 0.823 49 H 0.165 0.835 50 H 0.111 0.889 51 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.916 0.401 -1.869 5.275 hybrid contribution -0.142 0.326 1.585 1.624 sum 4.774 0.727 -0.284 4.838 Atomic orbital electron populations 1.22475 0.94116 1.03682 1.03463 1.22349 0.94419 0.92594 0.81592 1.21891 1.02473 0.90918 1.04201 1.22468 1.01661 1.02252 0.97285 1.86307 1.71571 1.23407 1.47273 1.18385 0.78828 0.80776 0.82600 1.90909 1.42338 1.71021 1.44413 1.44760 1.55259 1.12975 1.22937 1.21422 0.99838 0.78076 0.97992 1.22866 1.00756 0.96865 0.92364 0.86860 1.23576 1.00989 0.96745 0.96972 1.21956 0.87593 0.98282 0.91849 0.89202 1.45441 1.10844 1.70598 1.06245 1.18080 0.87277 0.76121 0.82827 1.90796 1.29262 1.51438 1.72986 1.21060 0.91954 1.01797 0.92517 1.67500 0.97784 1.11250 1.40231 1.23019 0.96775 0.95289 0.90537 1.21771 0.97362 0.99681 0.95708 1.25177 0.99829 0.89331 1.03710 1.86515 1.95078 1.16013 1.38308 0.93818 0.73608 0.83272 0.81311 1.21734 0.90561 0.93831 1.01864 1.22273 1.01067 0.96909 0.93490 1.23260 1.04643 0.95175 0.92805 0.92055 0.89455 0.91781 0.91138 0.88304 0.91297 0.91753 0.89486 0.91874 0.74780 0.91044 0.91480 0.88547 0.91443 0.74094 0.79387 0.86454 0.75212 1.20500 1.22520 0.82344 0.83479 0.88923 0.87125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.66 8.37 71.98 0.60 -0.06 16 2 C 0.13 0.41 1.13 -10.79 -0.01 0.40 16 3 C -0.14 0.25 8.85 71.98 0.64 0.88 16 4 C -0.18 -0.59 8.37 71.98 0.60 0.01 16 5 O -0.37 -2.14 9.94 -55.37 -0.55 -2.69 16 6 C 0.64 4.31 8.06 129.79 1.05 5.36 16 7 O -0.60 -7.23 11.88 19.79 0.24 -7.00 16 8 N -0.70 0.11 5.56 -590.86 -3.29 -3.17 16 9 C 0.15 -0.41 5.52 86.37 0.48 0.06 16 10 C -0.11 0.77 3.64 -10.18 -0.04 0.73 16 11 H 0.11 -1.03 8.14 -2.39 -0.02 -1.05 16 12 C -0.14 0.53 7.45 31.22 0.23 0.77 16 13 C 0.11 -0.23 4.30 45.52 0.20 -0.03 16 14 H 0.09 0.18 7.50 -2.39 -0.02 0.16 16 15 N -0.68 0.53 5.25 -442.58 -2.33 -1.80 16 16 C 0.57 3.03 7.81 86.88 0.68 3.71 16 17 O -0.57 -6.98 15.94 -3.74 -0.06 -7.04 16 18 C 0.06 0.18 6.75 41.91 0.28 0.46 16 19 N -0.46 0.22 9.54 -184.92 -1.76 -1.55 16 20 C 0.10 -0.45 9.84 84.81 0.83 0.39 16 21 C -0.14 0.59 5.37 -19.69 -0.11 0.49 16 22 C -0.07 0.40 2.82 71.24 0.20 0.60 16 23 O -0.55 2.46 12.84 -148.98 -1.91 0.54 16 24 Si 0.77 -5.41 29.83 68.60 2.05 -3.37 16 25 C -0.05 0.12 9.83 22.45 0.22 0.34 16 26 C -0.12 -0.17 9.63 22.61 0.22 0.05 16 27 C -0.12 0.86 7.38 31.12 0.23 1.09 16 28 H 0.06 0.19 8.14 -2.38 -0.02 0.17 16 29 H 0.09 0.01 8.14 -2.39 -0.02 -0.01 16 30 H 0.06 0.57 5.88 -2.38 -0.01 0.56 16 31 H 0.07 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.10 -0.50 8.14 -2.39 -0.02 -0.52 16 33 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 34 H 0.06 0.55 5.88 -2.39 -0.01 0.54 16 35 H 0.09 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.06 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.42 -1.77 8.58 -92.71 -0.80 -2.57 16 38 H 0.07 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.07 -0.05 7.85 -2.38 -0.02 -0.07 16 40 H 0.10 -0.33 7.91 -2.39 -0.02 -0.34 16 41 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 42 H 0.42 -1.87 8.03 -92.71 -0.74 -2.62 16 43 H 0.19 -1.92 4.92 -2.91 -0.01 -1.94 16 44 H 0.12 -0.59 7.96 -2.39 -0.02 -0.60 16 45 H 0.40 -4.93 8.70 -74.06 -0.64 -5.57 16 46 H -0.28 0.70 7.11 99.48 0.71 1.40 16 47 H -0.30 -0.40 7.11 99.48 0.71 0.31 16 48 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 49 H 0.15 0.29 7.64 -2.91 -0.02 0.26 16 50 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 51 H 0.11 -0.90 8.10 -2.38 -0.02 -0.92 16 Total: 0.00 -23.25 416.70 -2.48 -25.73 By element: Atomic # 1 Polarization: -13.73 SS G_CDS: -1.17 Total: -14.90 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 6.30 Total: 15.23 kcal Atomic # 7 Polarization: 0.86 SS G_CDS: -7.37 Total: -6.52 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: -2.29 Total: -16.18 kcal Atomic # 14 Polarization: -5.41 SS G_CDS: 2.05 Total: -3.37 kcal Total: -23.25 -2.48 -25.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_13287726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.946 kcal (2) G-P(sol) polarization free energy of solvation -23.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds