Wall clock time and date at job start Sat Mar 6 2021 19:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34659 * 124.85460 * 2 1 4 4 C 1.36765 * 108.39683 * 180.13720 * 3 2 1 5 5 C 1.47270 * 126.93880 * 179.87615 * 4 3 2 6 6 O 1.21622 * 119.99759 * 179.68449 * 5 4 3 7 7 N 1.34776 * 119.99831 * 359.68284 * 5 4 3 8 8 C 1.46505 * 119.99597 * 180.02562 * 7 5 4 9 9 H 1.09000 * 112.85296 * 23.80222 * 8 7 5 10 10 C 1.53781 * 113.61334 * 154.99978 * 8 7 5 11 11 C 1.53786 * 87.17350 * 89.07333 * 10 8 7 12 12 H 1.09000 * 113.60973 * 270.92699 * 11 10 8 13 13 C 1.52990 * 113.61464 * 140.02626 * 11 10 8 14 14 N 1.46497 * 109.47171 * 174.99989 * 13 11 10 15 15 C 1.34777 * 120.00242 * 179.97438 * 14 13 11 16 16 O 1.21506 * 120.00094 * 0.02562 * 15 14 13 17 17 O 1.34638 * 119.99881 * 179.97438 * 15 14 13 18 18 C 1.45202 * 116.99756 * 180.02562 * 17 15 14 19 19 C 1.53002 * 109.47538 * 60.00033 * 18 17 15 20 20 C 1.53001 * 109.47398 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47062 * 300.00065 * 18 17 15 22 22 C 1.53781 * 113.61146 * 252.49455 * 8 7 5 23 23 C 1.46683 * 106.11950 * 359.61011 * 4 3 2 24 24 C 1.34492 * 106.32884 * 0.24060 * 23 4 3 25 25 C 1.50706 * 125.56709 * 179.97438 * 24 23 4 26 26 O 1.42901 * 109.46438 * 210.02575 * 25 24 23 27 27 Si 1.86295 * 109.47094 * 330.02455 * 25 24 23 28 28 H 1.09001 * 109.46904 * 270.30779 * 1 2 3 29 29 H 1.08996 * 109.47262 * 30.30536 * 1 2 3 30 30 H 1.09004 * 109.47183 * 150.30647 * 1 2 3 31 31 H 1.08005 * 125.79697 * 0.02976 * 3 2 1 32 32 H 0.96995 * 120.00232 * 359.97438 * 7 5 4 33 33 H 1.09002 * 113.61445 * 203.66333 * 10 8 7 34 34 H 1.09002 * 113.61408 * 334.48063 * 10 8 7 35 35 H 1.09007 * 109.47036 * 294.99322 * 13 11 10 36 36 H 1.08994 * 109.47734 * 54.99728 * 13 11 10 37 37 H 0.97003 * 120.00176 * 359.97438 * 14 13 11 38 38 H 1.09006 * 109.46725 * 59.99586 * 19 18 17 39 39 H 1.08996 * 109.47691 * 179.97438 * 19 18 17 40 40 H 1.08995 * 109.46964 * 300.00232 * 19 18 17 41 41 H 1.09009 * 109.46882 * 59.99690 * 20 18 17 42 42 H 1.08995 * 109.47264 * 179.97438 * 20 18 17 43 43 H 1.09000 * 109.47118 * 300.00542 * 20 18 17 44 44 H 1.09001 * 109.46675 * 60.00212 * 21 18 17 45 45 H 1.09001 * 109.47067 * 179.97438 * 21 18 17 46 46 H 1.08996 * 109.46939 * 300.00013 * 21 18 17 47 47 H 1.09005 * 113.61471 * 25.43638 * 22 8 7 48 48 H 1.08996 * 113.61178 * 156.24980 * 22 8 7 49 49 H 1.08002 * 126.83759 * 180.25951 * 23 4 3 50 50 H 1.08992 * 109.46840 * 90.02649 * 25 24 23 51 51 H 0.96695 * 114.00635 * 60.00395 * 26 25 24 52 52 H 1.48500 * 109.99961 * 180.02562 * 27 25 24 53 53 H 1.48505 * 109.99983 * 301.31810 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2346 1.1050 0.0000 4 6 3.5462 0.7176 -0.0031 5 6 4.7284 1.5957 -0.0068 6 8 5.8446 1.1127 -0.0035 7 7 4.5734 2.9345 -0.0138 8 6 5.7495 3.8080 -0.0180 9 1 6.6374 3.3205 -0.4206 10 6 5.4828 5.1974 -0.6208 11 6 5.0849 5.6508 0.7938 12 1 4.0285 5.5037 1.0184 13 6 5.5796 7.0542 1.1494 14 7 5.0526 7.4400 2.4607 15 6 5.3594 8.6442 2.9825 16 8 6.0726 9.4101 2.3651 17 8 4.8746 8.9990 4.1874 18 6 5.2457 10.3109 4.6870 19 6 4.7550 11.3849 3.7140 20 6 4.6059 10.5341 6.0588 21 6 6.7681 10.3960 4.8150 22 6 5.9909 4.5225 1.3222 23 6 3.5375 -0.7492 0.0045 24 6 2.2447 -1.1198 0.0060 25 6 1.7397 -2.5397 0.0127 26 8 0.4812 -2.6007 -0.6615 27 14 2.9654 -3.6387 -0.8594 28 1 -0.3633 0.0055 1.0277 29 1 -0.3633 0.8872 -0.5185 30 1 -0.3634 -0.8927 -0.5091 31 1 1.8767 2.1241 0.0005 32 1 3.6832 3.3196 -0.0168 33 1 6.3790 5.6879 -1.0006 34 1 4.6575 5.2133 -1.3327 35 1 6.6692 7.0583 1.1802 36 1 5.2347 7.7627 0.3964 37 1 4.4829 6.8289 2.9535 38 1 3.6704 11.3242 3.6228 39 1 5.0332 12.3697 4.0892 40 1 5.2112 11.2257 2.7370 41 1 4.9559 9.7690 6.7518 42 1 4.8849 11.5187 6.4339 43 1 3.5214 10.4733 5.9680 44 1 7.2242 10.2369 3.8379 45 1 7.0467 11.3809 5.1896 46 1 7.1177 9.6309 5.5082 47 1 5.5750 3.9939 2.1800 48 1 7.0263 4.8272 1.4742 49 1 4.3981 -1.4018 0.0084 50 1 1.6174 -2.8769 1.0419 51 1 0.5150 -2.3143 -1.5844 52 1 2.4787 -5.0417 -0.8603 53 1 3.1650 -3.1701 -2.2544 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_13287730.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:59:43 Heat of formation + Delta-G solvation = -71.196673 kcal Electronic energy + Delta-G solvation = -32776.694081 eV Core-core repulsion = 28231.047649 eV Total energy + Delta-G solvation = -4545.646432 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.45914 -41.82877 -41.02412 -39.34866 -38.25299 -37.93745 -35.91418 -34.95628 -34.13887 -33.59458 -31.36988 -29.08072 -28.37527 -28.30681 -27.49145 -26.65734 -26.32031 -24.50302 -23.50812 -22.80883 -21.24550 -21.05948 -20.69778 -20.16603 -19.10220 -19.03104 -17.70668 -17.42805 -17.31280 -17.16997 -16.78885 -16.70394 -16.33774 -15.98605 -15.74076 -15.72197 -15.57171 -15.37242 -15.28830 -14.90660 -14.72829 -14.52737 -14.45186 -14.11458 -13.86439 -13.45145 -13.43259 -13.36097 -13.22112 -13.21384 -13.03258 -12.92286 -12.88507 -12.85840 -12.45673 -12.36614 -12.34358 -12.00115 -11.95231 -11.60091 -11.40131 -11.25683 -11.09909 -11.00636 -10.89501 -10.20652 -10.05088 -9.54524 -9.19786 -4.89444 0.75328 1.03590 1.18538 1.45327 1.63053 1.76269 1.81155 2.06337 2.27654 2.56724 3.13228 3.16199 3.48725 3.57055 3.62206 3.73940 3.78692 3.79043 3.87539 3.91529 3.93939 3.98030 4.27211 4.32212 4.44892 4.46443 4.49604 4.52132 4.57559 4.60431 4.63200 4.74292 4.75672 4.79514 4.82260 4.83602 4.86899 4.87101 4.90355 4.97820 5.02211 5.02541 5.09601 5.13189 5.22214 5.26333 5.28564 5.37604 5.59363 5.63937 5.71052 5.97587 6.24296 6.32502 6.40187 6.67377 7.34586 7.37815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.046 3.954 2 N -0.426 5.426 3 C 0.072 3.928 4 C -0.262 4.262 5 C 0.590 3.410 6 O -0.593 6.593 7 N -0.698 5.698 8 C 0.114 3.886 9 H 0.080 0.920 10 C -0.123 4.123 11 C -0.106 4.106 12 H 0.119 0.881 13 C 0.148 3.852 14 N -0.698 5.698 15 C 0.640 3.360 16 O -0.596 6.596 17 O -0.370 6.370 18 C 0.127 3.873 19 C -0.179 4.179 20 C -0.138 4.138 21 C -0.180 4.180 22 C -0.145 4.145 23 C -0.155 4.155 24 C -0.025 4.025 25 C -0.042 4.042 26 O -0.539 6.539 27 Si 0.772 3.228 28 H 0.079 0.921 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.208 0.792 32 H 0.413 0.587 33 H 0.104 0.896 34 H 0.093 0.907 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.417 0.583 38 H 0.063 0.937 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.098 0.902 43 H 0.070 0.930 44 H 0.063 0.937 45 H 0.086 0.914 46 H 0.061 0.939 47 H 0.069 0.931 48 H 0.090 0.910 49 H 0.154 0.846 50 H 0.132 0.868 51 H 0.388 0.612 52 H -0.288 1.288 53 H -0.295 1.295 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.214 1.677 1.360 7.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 N -0.100 5.100 3 C -0.066 4.066 4 C -0.272 4.272 5 C 0.381 3.619 6 O -0.474 6.474 7 N -0.349 5.349 8 C 0.008 3.992 9 H 0.099 0.901 10 C -0.161 4.161 11 C -0.125 4.125 12 H 0.137 0.863 13 C 0.026 3.974 14 N -0.358 5.358 15 C 0.394 3.606 16 O -0.488 6.488 17 O -0.285 6.285 18 C 0.091 3.909 19 C -0.237 4.237 20 C -0.195 4.195 21 C -0.238 4.238 22 C -0.184 4.184 23 C -0.179 4.179 24 C -0.134 4.134 25 C -0.152 4.152 26 O -0.347 6.347 27 Si 0.676 3.324 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.128 0.872 31 H 0.225 0.775 32 H 0.250 0.750 33 H 0.122 0.878 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.253 0.747 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.116 0.884 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.088 0.912 48 H 0.108 0.892 49 H 0.171 0.829 50 H 0.150 0.850 51 H 0.238 0.762 52 H -0.215 1.215 53 H -0.221 1.221 Dipole moment (debyes) X Y Z Total from point charges -6.528 0.982 1.021 6.680 hybrid contribution -1.019 0.393 -0.516 1.208 sum -7.546 1.375 0.506 7.687 Atomic orbital electron populations 1.22733 0.74681 1.07038 1.04927 1.43724 1.08005 1.04637 1.53645 1.22420 0.89025 0.93225 1.01889 1.20315 0.92190 0.93931 1.20754 1.17671 0.87756 0.82160 0.74348 1.90757 1.27770 1.76141 1.52750 1.45317 1.09819 1.04563 1.75209 1.21790 0.89232 0.90455 0.97752 0.90145 1.23262 1.03875 0.93123 0.95842 1.22850 1.01099 0.91319 0.97224 0.86332 1.21419 0.98590 0.95792 0.81597 1.44742 1.54350 1.14987 1.21741 1.18401 0.78785 0.83186 0.80267 1.90908 1.42088 1.52756 1.63010 1.86307 1.70285 1.38770 1.33115 1.22345 0.95544 0.78013 0.95038 1.22467 1.01692 0.99044 1.00451 1.21890 1.01568 1.03797 0.92205 1.22477 0.94357 1.03706 1.03224 1.23567 1.00798 0.96634 0.97420 1.21818 0.95550 0.93642 1.06896 1.20796 0.90466 0.89791 1.12321 1.24714 0.92398 0.94124 1.03999 1.86536 1.29612 1.88792 1.29746 0.93324 0.84561 0.74637 0.79910 0.90279 0.87668 0.87201 0.77526 0.74952 0.87801 0.88876 0.91792 0.91130 0.74680 0.91841 0.89531 0.91793 0.91262 0.88362 0.91090 0.91831 0.89493 0.92032 0.91243 0.89192 0.82876 0.84996 0.76221 1.21521 1.22147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.42 10.71 127.77 1.37 0.95 16 2 N -0.43 1.55 3.09 -533.23 -1.65 -0.09 16 3 C 0.07 -0.31 10.83 83.91 0.91 0.60 16 4 C -0.26 -0.77 6.29 -19.04 -0.12 -0.89 16 5 C 0.59 3.70 7.81 86.62 0.68 4.38 16 6 O -0.59 -9.50 16.57 -4.10 -0.07 -9.57 16 7 N -0.70 1.55 5.25 -443.44 -2.33 -0.78 16 8 C 0.11 -0.20 4.32 45.52 0.20 -0.01 16 9 H 0.08 0.33 7.46 -2.39 -0.02 0.32 16 10 C -0.12 0.90 7.38 31.12 0.23 1.13 16 11 C -0.11 0.84 3.64 -10.18 -0.04 0.81 16 12 H 0.12 -1.38 8.14 -2.39 -0.02 -1.40 16 13 C 0.15 -0.47 5.52 86.38 0.48 0.01 16 14 N -0.70 0.62 5.56 -590.88 -3.29 -2.66 16 15 C 0.64 4.01 8.06 129.79 1.05 5.06 16 16 O -0.60 -7.12 11.88 19.82 0.24 -6.88 16 17 O -0.37 -1.93 9.94 -55.47 -0.55 -2.48 16 18 C 0.13 0.37 1.13 -10.79 -0.01 0.35 16 19 C -0.18 -0.53 8.37 71.98 0.60 0.07 16 20 C -0.14 0.30 8.85 71.98 0.64 0.94 16 21 C -0.18 -0.63 8.37 71.98 0.60 -0.03 16 22 C -0.15 0.54 7.44 31.21 0.23 0.77 16 23 C -0.16 -0.56 9.49 23.62 0.22 -0.33 16 24 C -0.02 0.01 6.14 40.99 0.25 0.26 16 25 C -0.04 0.11 2.98 71.24 0.21 0.32 16 26 O -0.54 1.62 9.95 -148.98 -1.48 0.14 16 27 Si 0.77 -0.92 31.12 68.60 2.13 1.22 16 28 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 29 H 0.10 -1.42 8.13 -2.39 -0.02 -1.44 16 30 H 0.11 -0.94 4.94 -2.39 -0.01 -0.95 16 31 H 0.21 -2.75 7.45 -2.91 -0.02 -2.77 16 32 H 0.41 -3.91 7.64 -92.71 -0.71 -4.62 16 33 H 0.10 -0.75 8.10 -2.39 -0.02 -0.77 16 34 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.06 -0.03 7.85 -2.38 -0.02 -0.05 16 36 H 0.07 -0.14 8.14 -2.39 -0.02 -0.16 16 37 H 0.42 -2.26 8.58 -92.71 -0.80 -3.06 16 38 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 39 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.06 0.53 5.88 -2.39 -0.01 0.52 16 41 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 42 H 0.10 -0.53 8.14 -2.39 -0.02 -0.55 16 43 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 44 H 0.06 0.57 5.88 -2.39 -0.01 0.55 16 45 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 46 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 47 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 48 H 0.09 -0.22 7.91 -2.39 -0.02 -0.24 16 49 H 0.15 0.47 6.89 -2.91 -0.02 0.45 16 50 H 0.13 -0.58 7.96 -2.39 -0.02 -0.60 16 51 H 0.39 -3.00 8.38 -74.06 -0.62 -3.62 16 52 H -0.29 -1.34 7.11 99.48 0.71 -0.63 16 53 H -0.29 -1.51 7.11 99.48 0.71 -0.80 16 Total: 0.00 -27.93 425.68 -0.63 -28.57 By element: Atomic # 1 Polarization: -20.70 SS G_CDS: -1.14 Total: -21.84 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 7.50 Total: 14.38 kcal Atomic # 7 Polarization: 3.72 SS G_CDS: -7.26 Total: -3.54 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: -1.87 Total: -18.79 kcal Atomic # 14 Polarization: -0.92 SS G_CDS: 2.13 Total: 1.22 kcal Total: -27.93 -0.63 -28.57 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_13287730.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.629 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds