Wall clock time and date at job start Sat Mar 6 2021 20:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47209 * 2 1 4 4 C 1.53007 * 109.46943 * 239.99619 * 2 1 3 5 5 O 1.45201 * 109.47349 * 120.00076 * 2 1 3 6 6 C 1.34633 * 117.00278 * 59.99519 * 5 2 1 7 7 O 1.21515 * 119.99912 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00625 * 180.02562 * 6 5 2 9 9 C 1.46495 * 120.00515 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47231 * 179.97438 * 9 8 6 11 11 H 1.08998 * 112.85020 * 316.19641 * 10 9 8 12 12 C 1.53778 * 113.68574 * 87.46578 * 10 9 8 13 13 C 1.53784 * 87.07731 * 139.99431 * 12 10 9 14 14 H 1.09000 * 113.68807 * 220.00491 * 13 12 10 15 15 N 1.46499 * 113.61633 * 89.11577 * 13 12 10 16 16 C 1.34784 * 119.99971 * 107.50076 * 15 13 12 17 17 O 1.21650 * 119.99709 * 359.72688 * 16 15 13 18 18 C 1.47041 * 119.99639 * 179.97438 * 16 15 13 19 19 C 1.36225 * 123.48815 * 180.02562 * 18 16 15 20 20 Cl 1.73600 * 124.60665 * 359.97438 * 19 18 16 21 21 S 1.70448 * 110.78850 * 179.97438 * 19 18 16 22 22 C 1.75492 * 92.46524 * 359.97438 * 21 19 18 23 23 C 1.50706 * 124.68455 * 180.02562 * 22 21 19 24 24 O 1.42900 * 109.47236 * 120.02452 * 23 22 21 25 25 Si 1.86299 * 109.46909 * 0.02562 * 23 22 21 26 26 C 1.32691 * 110.63231 * 359.73624 * 22 21 19 27 27 C 1.53776 * 87.08228 * 334.56321 * 13 12 10 28 28 H 1.09003 * 109.46591 * 300.00117 * 1 2 3 29 29 H 1.08992 * 109.46822 * 59.99786 * 1 2 3 30 30 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47225 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.46619 * 299.99780 * 3 2 1 33 33 H 1.08995 * 109.47675 * 60.00121 * 3 2 1 34 34 H 1.08996 * 109.47160 * 299.99881 * 4 2 1 35 35 H 1.08996 * 109.46669 * 60.00154 * 4 2 1 36 36 H 1.09000 * 109.46806 * 180.02562 * 4 2 1 37 37 H 0.97006 * 119.99118 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.47000 * 59.99914 * 9 8 6 39 39 H 1.09002 * 109.47204 * 299.99870 * 9 8 6 40 40 H 1.08996 * 113.61870 * 25.44330 * 12 10 9 41 41 H 1.09003 * 113.61168 * 254.53702 * 12 10 9 42 42 H 0.96999 * 119.99984 * 287.49924 * 15 13 12 43 43 H 1.09008 * 109.46741 * 240.02145 * 23 22 21 44 44 H 0.96699 * 113.99800 * 180.02562 * 24 23 22 45 45 H 1.48498 * 109.99747 * 60.00960 * 25 23 22 46 46 H 1.48503 * 109.99439 * 181.32156 * 25 23 22 47 47 H 1.07999 * 123.45395 * 180.26645 * 26 22 21 48 48 H 1.09001 * 113.61142 * 139.97784 * 27 13 12 49 49 H 1.08999 * 113.61755 * 270.80042 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2493 5 8 2.0141 -0.6845 1.1855 6 6 1.6523 -1.9723 1.3384 7 8 0.9516 -2.5097 0.5037 8 7 2.0673 -2.6654 2.4172 9 6 1.6741 -4.0668 2.5832 10 6 2.2742 -4.6148 3.8796 11 1 3.3149 -4.3231 4.0207 12 6 1.3939 -4.3750 5.1175 13 6 1.7848 -5.7911 5.5723 14 1 0.9619 -6.3512 6.0165 15 7 3.0037 -5.8313 6.3840 16 6 2.9241 -6.0705 7.7081 17 8 1.8396 -6.2480 8.2299 18 6 4.1476 -6.1113 8.5226 19 6 4.1498 -6.3473 9.8643 20 17 2.7274 -6.6335 10.8174 21 16 5.7390 -6.3233 10.4801 22 6 6.4269 -5.9888 8.9006 23 6 7.8987 -5.8185 8.6248 24 8 8.3244 -6.8062 7.6839 25 14 8.8550 -6.0190 10.2111 26 6 5.4728 -5.9126 7.9817 27 6 2.0218 -6.1173 4.0884 28 1 -0.3632 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6767 -1.7490 -1.2492 35 1 1.6766 -0.2075 -2.1392 36 1 3.1300 -0.7218 -1.2490 37 1 2.6270 -2.2365 3.0833 38 1 2.0412 -4.6497 1.7385 39 1 0.5872 -4.1364 2.6277 40 1 0.3343 -4.2678 4.8857 41 1 1.7668 -3.5876 5.7725 42 1 3.8680 -5.6858 5.9686 43 1 8.0790 -4.8247 8.2149 44 1 9.2637 -6.7566 7.4595 45 1 8.6177 -7.3701 10.7797 46 1 10.3050 -5.8218 9.9582 47 1 5.6664 -5.7185 6.9371 48 1 2.9016 -6.7363 3.9125 49 1 1.1342 -6.4878 3.5755 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_13431040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:00:26 Heat of formation + Delta-G solvation = -90.616722 kcal Electronic energy + Delta-G solvation = -32814.738190 eV Core-core repulsion = 28090.339485 eV Total energy + Delta-G solvation = -4724.398705 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.110 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.85644 -41.43047 -39.97054 -38.76229 -38.28333 -37.94496 -37.08401 -35.93768 -34.96894 -34.01267 -31.79158 -29.18090 -28.37656 -28.30637 -26.91222 -26.69660 -26.03188 -23.97350 -22.83440 -22.15116 -21.25259 -20.79393 -20.24612 -19.32932 -19.09219 -18.54134 -17.84383 -17.65925 -17.31692 -17.14084 -16.51190 -16.34089 -16.22807 -15.98557 -15.72221 -15.63250 -15.35001 -15.08061 -14.93706 -14.53639 -14.49649 -14.42834 -14.30291 -14.01027 -13.87511 -13.44176 -13.36005 -13.21836 -13.05197 -12.95093 -12.92014 -12.86838 -12.58099 -12.46654 -12.45094 -12.34831 -12.10530 -12.04484 -11.96656 -11.63296 -11.40305 -11.29362 -11.10530 -10.96487 -10.60268 -10.22680 -10.13569 -9.83727 -9.64961 -5.06512 -0.62882 -0.20181 0.47720 0.72501 1.03645 1.18056 1.19249 1.52933 1.75969 1.89358 2.11264 2.16138 3.12440 3.19679 3.45393 3.54598 3.59600 3.73885 3.76008 3.78928 3.83438 3.87345 3.93919 3.94381 4.25762 4.36229 4.46698 4.48685 4.55482 4.60428 4.61915 4.73087 4.75667 4.78008 4.80281 4.82519 4.85917 4.87042 4.88148 4.98156 5.00943 5.07371 5.11318 5.17992 5.26291 5.26516 5.36585 5.57982 5.61337 6.39817 6.45317 6.56863 7.14581 7.34315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.127 3.873 3 C -0.138 4.138 4 C -0.180 4.180 5 O -0.370 6.370 6 C 0.640 3.360 7 O -0.597 6.597 8 N -0.698 5.698 9 C 0.148 3.852 10 C -0.107 4.107 11 H 0.119 0.881 12 C -0.143 4.143 13 C 0.113 3.887 14 H 0.084 0.916 15 N -0.690 5.690 16 C 0.574 3.426 17 O -0.559 6.559 18 C -0.166 4.166 19 C -0.140 4.140 20 Cl 0.004 6.996 21 S 0.261 5.739 22 C -0.190 4.190 23 C -0.030 4.030 24 O -0.549 6.549 25 Si 0.695 3.305 26 C -0.069 4.069 27 C -0.124 4.124 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.086 0.914 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.071 0.929 42 H 0.415 0.585 43 H 0.125 0.875 44 H 0.402 0.598 45 H -0.279 1.279 46 H -0.249 1.249 47 H 0.183 0.817 48 H 0.091 0.909 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.314 4.643 -0.816 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.091 3.909 3 C -0.195 4.195 4 C -0.237 4.237 5 O -0.285 6.285 6 C 0.394 3.606 7 O -0.488 6.488 8 N -0.358 5.358 9 C 0.026 3.974 10 C -0.126 4.126 11 H 0.137 0.863 12 C -0.182 4.182 13 C 0.008 3.992 14 H 0.103 0.897 15 N -0.343 5.343 16 C 0.360 3.640 17 O -0.438 6.438 18 C -0.186 4.186 19 C -0.287 4.287 20 Cl 0.033 6.967 21 S 0.526 5.474 22 C -0.307 4.307 23 C -0.142 4.142 24 O -0.360 6.360 25 Si 0.597 3.403 26 C -0.097 4.097 27 C -0.162 4.162 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.253 0.747 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.253 0.747 43 H 0.143 0.857 44 H 0.254 0.746 45 H -0.205 1.205 46 H -0.173 1.173 47 H 0.200 0.800 48 H 0.110 0.890 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.688 3.474 1.079 8.506 hybrid contribution -0.021 -0.280 -1.973 1.993 sum 7.668 3.194 -0.894 8.354 Atomic orbital electron populations 1.22476 0.94185 1.03644 1.03464 1.22343 0.94366 0.92616 0.81582 1.21889 1.02507 0.90866 1.04206 1.22470 1.01681 1.02222 0.97310 1.86305 1.71544 1.23368 1.47239 1.18401 0.78826 0.80789 0.82616 1.90911 1.42353 1.71040 1.44470 1.44734 1.55231 1.12911 1.22949 1.21415 0.99754 0.78134 0.98087 1.22819 1.00960 0.96559 0.92258 0.86339 1.23513 1.00822 0.96897 0.96975 1.21845 0.87665 0.98143 0.91556 0.89743 1.45349 1.10497 1.71826 1.06582 1.17642 0.87550 0.76240 0.82584 1.90860 1.29902 1.50420 1.72614 1.20317 0.95278 1.10893 0.92072 1.25788 0.97251 1.08960 0.96714 1.98423 1.35503 1.93727 1.69074 1.83273 0.90514 1.65529 1.08085 1.23803 0.99383 1.10874 0.96660 1.24061 0.91691 0.95949 1.02504 1.86548 1.32432 1.55757 1.61290 0.94682 0.81797 0.84703 0.79106 1.21125 0.87449 0.99412 1.01741 1.23274 1.04454 0.95357 0.93125 0.92023 0.89498 0.91843 0.91068 0.88375 0.91231 0.91815 0.89533 0.91825 0.74651 0.91194 0.91730 0.89013 0.91013 0.74728 0.85733 0.74596 1.20513 1.17343 0.80013 0.88997 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.62 8.37 71.98 0.60 -0.01 16 2 C 0.13 0.35 1.13 -10.79 -0.01 0.34 16 3 C -0.14 0.33 8.85 71.98 0.64 0.96 16 4 C -0.18 -0.52 8.37 71.98 0.60 0.08 16 5 O -0.37 -1.87 9.94 -55.42 -0.55 -2.42 16 6 C 0.64 3.94 8.06 129.79 1.05 4.98 16 7 O -0.60 -7.08 11.88 19.79 0.24 -6.84 16 8 N -0.70 0.72 5.56 -590.85 -3.28 -2.56 16 9 C 0.15 -0.48 5.51 86.38 0.48 -0.01 16 10 C -0.11 0.87 3.63 -10.27 -0.04 0.83 16 11 H 0.12 -1.37 8.14 -2.39 -0.02 -1.39 16 12 C -0.14 0.63 7.43 31.12 0.23 0.86 16 13 C 0.11 -0.27 4.32 45.52 0.20 -0.07 16 14 H 0.08 0.26 7.47 -2.39 -0.02 0.24 16 15 N -0.69 1.61 5.24 -443.66 -2.33 -0.71 16 16 C 0.57 3.12 7.79 86.55 0.67 3.80 16 17 O -0.56 -7.60 14.51 -4.19 -0.06 -7.66 16 18 C -0.17 -0.49 5.98 -19.84 -0.12 -0.61 16 19 C -0.14 -0.67 6.87 67.35 0.46 -0.21 16 20 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 21 S 0.26 -0.18 20.17 -56.49 -1.14 -1.32 16 22 C -0.19 0.61 5.72 24.52 0.14 0.75 16 23 C -0.03 0.22 2.94 71.24 0.21 0.43 16 24 O -0.55 2.94 12.82 -148.98 -1.91 1.03 16 25 Si 0.70 -4.17 30.90 68.60 2.12 -2.05 16 26 C -0.07 0.22 9.71 22.70 0.22 0.44 16 27 C -0.12 0.90 7.39 31.12 0.23 1.13 16 28 H 0.06 0.17 8.14 -2.39 -0.02 0.16 16 29 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 30 H 0.06 0.56 5.88 -2.39 -0.01 0.54 16 31 H 0.07 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 33 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.06 0.53 5.88 -2.39 -0.01 0.51 16 35 H 0.09 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.42 -2.35 8.58 -92.70 -0.80 -3.15 16 38 H 0.07 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.06 -0.05 7.85 -2.39 -0.02 -0.06 16 40 H 0.09 -0.29 7.90 -2.39 -0.02 -0.31 16 41 H 0.07 -0.23 8.14 -2.39 -0.02 -0.24 16 42 H 0.41 -3.59 7.24 -92.71 -0.67 -4.26 16 43 H 0.13 -1.65 7.96 -2.38 -0.02 -1.67 16 44 H 0.40 -5.31 8.74 -74.06 -0.65 -5.96 16 45 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 46 H -0.25 0.81 7.11 99.48 0.71 1.52 16 47 H 0.18 -1.71 7.10 -2.91 -0.02 -1.73 16 48 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 49 H 0.11 -0.78 8.10 -2.39 -0.02 -0.80 16 Total: 0.00 -24.75 426.78 -2.49 -27.23 By element: Atomic # 1 Polarization: -17.28 SS G_CDS: -1.06 Total: -18.34 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 5.56 Total: 13.69 kcal Atomic # 7 Polarization: 2.34 SS G_CDS: -5.61 Total: -3.27 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: -2.29 Total: -15.89 kcal Atomic # 14 Polarization: -4.17 SS G_CDS: 2.12 Total: -2.05 kcal Atomic # 16 Polarization: -0.18 SS G_CDS: -1.14 Total: -1.32 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -24.75 -2.49 -27.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_13431040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.383 kcal (2) G-P(sol) polarization free energy of solvation -24.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds