Wall clock time and date at job start Sat Mar 6 2021 20:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36768 * 125.80074 * 2 1 4 4 C 1.47267 * 126.94079 * 0.24775 * 3 2 1 5 5 O 1.21625 * 120.00071 * 359.70391 * 4 3 2 6 6 N 1.34778 * 119.99847 * 179.70852 * 4 3 2 7 7 C 1.46501 * 119.99747 * 179.97438 * 6 4 3 8 8 H 1.09000 * 112.84941 * 334.66410 * 7 6 4 9 9 C 1.53784 * 113.61477 * 105.86163 * 7 6 4 10 10 C 1.54057 * 86.98033 * 89.16010 * 9 7 6 11 11 H 1.09000 * 113.61215 * 270.87981 * 10 9 7 12 12 C 1.53000 * 113.68948 * 139.99130 * 10 9 7 13 13 N 1.46507 * 109.47327 * 87.46794 * 12 10 9 14 14 C 1.34769 * 119.99984 * 179.97438 * 13 12 10 15 15 O 1.21511 * 120.00602 * 359.97438 * 14 13 12 16 16 O 1.34644 * 119.99764 * 180.02562 * 14 13 12 17 17 C 1.45203 * 116.99726 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.47194 * 60.00164 * 17 16 14 19 19 C 1.53001 * 109.47008 * 179.97438 * 17 16 14 20 20 C 1.52990 * 109.47375 * 299.99655 * 17 16 14 21 21 C 1.53772 * 87.08000 * 25.43445 * 10 9 7 22 22 C 1.46686 * 106.11610 * 179.97438 * 3 2 1 23 23 C 1.34480 * 106.32997 * 0.02562 * 22 3 2 24 24 C 1.50707 * 125.56790 * 180.02562 * 23 22 3 25 25 O 1.42895 * 109.46975 * 64.99861 * 24 23 22 26 26 Si 1.86301 * 109.46863 * 185.00191 * 24 23 22 27 27 N 1.34652 * 125.80105 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47596 * 89.99970 * 1 2 3 29 29 H 1.09001 * 109.47164 * 209.99816 * 1 2 3 30 30 H 1.09000 * 109.47367 * 329.99456 * 1 2 3 31 31 H 0.96992 * 120.00381 * 0.02562 * 6 4 3 32 32 H 1.08994 * 113.61666 * 203.65939 * 9 7 6 33 33 H 1.09004 * 113.61293 * 334.56941 * 9 7 6 34 34 H 1.09008 * 109.47204 * 207.46176 * 12 10 9 35 35 H 1.08995 * 109.47745 * 327.46479 * 12 10 9 36 36 H 0.96998 * 119.99845 * 359.97438 * 13 12 10 37 37 H 1.09004 * 109.47027 * 59.99366 * 18 17 16 38 38 H 1.08997 * 109.46854 * 179.97438 * 18 17 16 39 39 H 1.08995 * 109.46727 * 299.99995 * 18 17 16 40 40 H 1.09001 * 109.46723 * 60.00081 * 19 17 16 41 41 H 1.08997 * 109.47317 * 179.97438 * 19 17 16 42 42 H 1.09004 * 109.47228 * 300.00644 * 19 17 16 43 43 H 1.09008 * 109.46904 * 60.00469 * 20 17 16 44 44 H 1.09007 * 109.47264 * 179.97438 * 20 17 16 45 45 H 1.08998 * 109.47548 * 300.00092 * 20 17 16 46 46 H 1.09003 * 113.61379 * 220.02579 * 21 10 9 47 47 H 1.09003 * 113.69497 * 89.12665 * 21 10 9 48 48 H 1.07996 * 126.83134 * 179.97438 * 22 3 2 49 49 H 1.08995 * 109.46804 * 304.99775 * 24 23 22 50 50 H 0.96704 * 113.99803 * 179.97438 * 25 24 23 51 51 H 1.48507 * 109.99981 * 299.99609 * 26 24 23 52 52 H 1.48491 * 110.00271 * 61.31868 * 26 24 23 53 53 H 0.96997 * 124.85749 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3071 1.1093 0.0000 4 6 1.8701 2.5156 0.0051 5 8 0.6839 2.7839 0.0045 6 7 2.7849 3.5054 0.0103 7 6 2.3502 4.9045 0.0148 8 1 1.3584 5.0409 -0.4162 9 6 2.5330 5.6019 1.3731 10 6 3.9456 5.9867 0.8937 11 1 4.7051 5.2416 1.1307 12 6 4.3625 7.4056 1.2856 13 7 4.9732 7.3851 2.6172 14 6 5.4199 8.5294 3.1714 15 8 5.3166 9.5783 2.5666 16 8 5.9815 8.5104 4.3950 17 6 6.4406 9.7800 4.9294 18 6 5.2589 10.7464 5.0344 19 6 7.0442 9.5605 6.3180 20 6 7.5017 10.3712 3.9992 21 6 3.4027 5.8783 -0.5409 22 6 3.6882 0.6152 0.0006 23 6 3.6095 -0.7273 0.0004 24 6 4.7820 -1.6742 0.0014 25 8 5.5091 -1.5306 1.2231 26 14 4.1659 -3.4256 -0.1526 27 7 2.2947 -1.0921 0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 3.7310 3.2915 0.0104 32 1 1.8728 6.4572 1.5171 33 1 2.5296 4.9159 2.2202 34 1 5.0832 7.7857 0.5614 35 1 3.4849 8.0519 1.2983 36 1 5.0560 6.5478 3.0999 37 1 4.5029 10.3251 5.6971 38 1 5.6035 11.6993 5.4360 39 1 4.8285 10.9027 4.0453 40 1 7.8859 8.8720 6.2435 41 1 7.3893 10.5135 6.7190 42 1 6.2879 9.1395 6.9806 43 1 7.0712 10.5277 3.0100 44 1 7.8460 11.3245 4.4001 45 1 8.3435 9.6828 3.9244 46 1 4.1010 5.4152 -1.2382 47 1 2.9796 6.8083 -0.9206 48 1 4.5889 1.2110 0.0004 49 1 5.4357 -1.4437 -0.8398 50 1 6.2791 -2.1114 1.2931 51 1 3.2733 -3.7522 0.9885 52 1 3.4352 -3.5962 -1.4340 53 1 1.9734 -2.0073 0.0005 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13437852_9865296.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 20:02:52 Heat of formation + Delta-G solvation = -83.979169 kcal Electronic energy + Delta-G solvation = -32961.792501 eV Core-core repulsion = 28415.591778 eV Total energy + Delta-G solvation = -4546.200723 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.203 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.60677 -41.84043 -41.04616 -39.38212 -38.26659 -37.65017 -35.93424 -34.97720 -34.13320 -32.98908 -32.14406 -29.24701 -28.85656 -28.37945 -28.31131 -26.69857 -25.79901 -24.42339 -23.36857 -22.79393 -21.60308 -21.20247 -20.83963 -20.17913 -19.12360 -18.53247 -18.19781 -17.72598 -17.32560 -17.26128 -17.00358 -16.37059 -16.32147 -15.88641 -15.79023 -15.71477 -15.40272 -15.34173 -15.06830 -14.74808 -14.67001 -14.50492 -14.46553 -14.22573 -13.95515 -13.74157 -13.57841 -13.43854 -13.36632 -13.21786 -12.97601 -12.92796 -12.90790 -12.87227 -12.50750 -12.46366 -12.35368 -12.14056 -11.99107 -11.64303 -11.40871 -11.28576 -11.11031 -11.01347 -10.36505 -10.23774 -10.17453 -9.89552 -9.26637 -5.12234 0.56764 1.09111 1.17523 1.18732 1.55443 1.74976 1.79420 1.81845 2.30052 2.42945 3.11813 3.40377 3.45435 3.60136 3.67334 3.73386 3.75770 3.78490 3.83892 3.86438 3.93444 4.01408 4.07370 4.25120 4.39540 4.45186 4.47867 4.55299 4.56966 4.59994 4.61581 4.65661 4.72769 4.75175 4.78816 4.81497 4.84979 4.85844 4.86418 4.91211 4.99883 5.06467 5.10724 5.11814 5.21235 5.25901 5.27581 5.36485 5.57905 5.59046 5.65251 5.74521 6.18558 6.38397 6.59636 6.90075 7.28887 7.32990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.109 3.891 3 C -0.260 4.260 4 C 0.592 3.408 5 O -0.584 6.584 6 N -0.696 5.696 7 C 0.114 3.886 8 H 0.084 0.916 9 C -0.145 4.145 10 C -0.108 4.108 11 H 0.114 0.886 12 C 0.149 3.851 13 N -0.699 5.699 14 C 0.641 3.359 15 O -0.596 6.596 16 O -0.371 6.371 17 C 0.127 3.873 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.179 4.179 21 C -0.121 4.121 22 C -0.129 4.129 23 C 0.001 3.999 24 C -0.046 4.046 25 O -0.562 6.562 26 Si 0.771 3.229 27 N -0.551 5.551 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.413 0.587 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.416 0.584 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.108 0.892 48 H 0.169 0.831 49 H 0.111 0.889 50 H 0.407 0.593 51 H -0.294 1.294 52 H -0.284 1.284 53 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -6.397 -0.402 9.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.010 4.010 3 C -0.270 4.270 4 C 0.382 3.618 5 O -0.466 6.466 6 N -0.347 5.347 7 C 0.008 3.992 8 H 0.102 0.898 9 C -0.184 4.184 10 C -0.126 4.126 11 H 0.132 0.868 12 C 0.027 3.973 13 N -0.359 5.359 14 C 0.394 3.606 15 O -0.487 6.487 16 O -0.285 6.285 17 C 0.090 3.910 18 C -0.237 4.237 19 C -0.195 4.195 20 C -0.237 4.237 21 C -0.160 4.160 22 C -0.152 4.152 23 C -0.107 4.107 24 C -0.157 4.157 25 O -0.372 6.372 26 Si 0.676 3.324 27 N -0.151 5.151 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.250 0.750 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.252 0.748 37 H 0.079 0.921 38 H 0.106 0.894 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.082 0.918 46 H 0.110 0.890 47 H 0.126 0.874 48 H 0.186 0.814 49 H 0.128 0.872 50 H 0.259 0.741 51 H -0.221 1.221 52 H -0.210 1.210 53 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 4.876 -5.859 -0.611 7.647 hybrid contribution -0.091 -0.236 0.167 0.303 sum 4.785 -6.095 -0.445 7.762 Atomic orbital electron populations 1.20617 0.86056 1.04525 1.04132 1.20650 0.94446 0.85607 1.00294 1.20232 0.94139 0.91787 1.20853 1.17486 0.85053 0.84695 0.74586 1.90729 1.18159 1.84859 1.52882 1.45303 1.09919 1.04650 1.74780 1.21821 0.99351 0.80214 0.97768 0.89796 1.23572 0.96922 1.00634 0.97293 1.22846 0.97087 0.95454 0.97260 0.86797 1.21419 0.97535 0.97472 0.80880 1.44760 1.63113 1.08037 1.20021 1.18382 0.77155 0.84662 0.80373 1.90906 1.62228 1.31087 1.64466 1.86312 1.72450 1.38606 1.31179 1.22353 0.94293 0.79665 0.94662 1.22477 0.97920 1.00043 1.03306 1.21892 1.01377 1.04304 0.91897 1.22468 0.98136 1.02257 1.00794 1.23254 0.97358 0.99706 0.95651 1.22029 0.95569 0.92740 1.04905 1.19840 0.83866 0.95256 1.11722 1.24113 0.93175 1.07124 0.91243 1.86457 1.46314 1.67772 1.36657 0.93563 0.85314 0.77147 0.76367 1.41861 1.05952 1.08434 1.58822 0.89574 0.89813 0.89463 0.75046 0.88886 0.91610 0.91034 0.91598 0.74768 0.92079 0.89421 0.91818 0.91114 0.88282 0.91298 0.91789 0.89457 0.91849 0.88986 0.87406 0.81365 0.87151 0.74122 1.22112 1.21034 0.74578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 9.88 71.24 0.70 0.34 16 2 C 0.11 0.66 7.17 41.78 0.30 0.96 16 3 C -0.26 -1.78 6.29 -19.04 -0.12 -1.90 16 4 C 0.59 5.03 7.81 86.62 0.68 5.71 16 5 O -0.58 -8.96 14.43 -4.11 -0.06 -9.02 16 6 N -0.70 -0.78 5.26 -443.44 -2.33 -3.12 16 7 C 0.11 0.00 4.30 45.52 0.20 0.20 16 8 H 0.08 0.41 7.50 -2.39 -0.02 0.39 16 9 C -0.15 0.24 7.45 31.22 0.23 0.48 16 10 C -0.11 0.61 3.64 -10.18 -0.04 0.57 16 11 H 0.11 -0.93 8.14 -2.39 -0.02 -0.95 16 12 C 0.15 -0.24 5.52 86.38 0.48 0.24 16 13 N -0.70 -0.59 5.56 -590.84 -3.29 -3.87 16 14 C 0.64 4.83 8.06 129.79 1.05 5.88 16 15 O -0.60 -7.69 11.88 19.81 0.24 -7.45 16 16 O -0.37 -2.39 9.94 -55.53 -0.55 -2.94 16 17 C 0.13 0.48 1.13 -10.79 -0.01 0.47 16 18 C -0.18 -0.77 8.37 71.98 0.60 -0.16 16 19 C -0.14 0.19 8.85 71.98 0.64 0.82 16 20 C -0.18 -0.67 8.37 71.98 0.60 -0.07 16 21 C -0.12 0.67 7.38 31.12 0.23 0.90 16 22 C -0.13 -0.33 10.45 23.62 0.25 -0.09 16 23 C 0.00 0.00 6.13 40.98 0.25 0.25 16 24 C -0.05 0.21 2.97 71.24 0.21 0.43 16 25 O -0.56 2.39 12.86 -148.98 -1.92 0.47 16 26 Si 0.77 -4.87 30.96 68.60 2.12 -2.75 16 27 N -0.55 -1.71 5.41 -171.07 -0.93 -2.64 16 28 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 -0.05 8.14 -2.39 -0.02 -0.07 16 30 H 0.09 0.70 6.46 -2.39 -0.02 0.68 16 31 H 0.41 -1.69 7.83 -92.71 -0.73 -2.41 16 32 H 0.09 -0.11 7.91 -2.39 -0.02 -0.13 16 33 H 0.07 0.03 8.14 -2.39 -0.02 0.02 16 34 H 0.07 -0.04 8.14 -2.38 -0.02 -0.06 16 35 H 0.07 0.04 7.85 -2.39 -0.02 0.02 16 36 H 0.42 -1.34 8.58 -92.71 -0.80 -2.14 16 37 H 0.06 0.23 8.14 -2.38 -0.02 0.21 16 38 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 39 H 0.06 0.61 5.88 -2.39 -0.01 0.60 16 40 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.10 -0.47 8.14 -2.39 -0.02 -0.49 16 42 H 0.07 -0.09 8.14 -2.38 -0.02 -0.11 16 43 H 0.06 0.58 5.88 -2.38 -0.01 0.57 16 44 H 0.09 0.02 8.14 -2.38 -0.02 0.00 16 45 H 0.06 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 47 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 48 H 0.17 -0.47 7.70 -2.91 -0.02 -0.49 16 49 H 0.11 -1.04 7.96 -2.39 -0.02 -1.06 16 50 H 0.41 -6.04 8.74 -74.05 -0.65 -6.69 16 51 H -0.29 -0.25 7.11 99.48 0.71 0.45 16 52 H -0.28 0.28 7.11 99.48 0.71 0.99 16 53 H 0.41 -0.04 6.72 -92.71 -0.62 -0.66 16 Total: 0.00 -26.52 427.24 -2.26 -28.78 By element: Atomic # 1 Polarization: -10.69 SS G_CDS: -1.79 Total: -12.48 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 6.24 Total: 15.02 kcal Atomic # 7 Polarization: -3.09 SS G_CDS: -6.54 Total: -9.63 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -2.29 Total: -18.94 kcal Atomic # 14 Polarization: -4.87 SS G_CDS: 2.12 Total: -2.75 kcal Total: -26.52 -2.26 -28.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13437852_9865296.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.203 kcal (2) G-P(sol) polarization free energy of solvation -26.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds