Wall clock time and date at job start Sun Mar 7 2021 03:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86301 * 109.47306 * 2 1 4 4 C 1.50703 * 109.46839 * 119.99615 * 2 1 3 5 5 C 1.35454 * 126.07047 * 245.02130 * 4 2 1 6 6 N 1.35534 * 108.87307 * 179.75013 * 5 4 2 7 7 C 1.37652 * 108.64146 * 0.37501 * 6 5 4 8 8 C 1.46680 * 126.23118 * 179.88732 * 7 6 5 9 9 O 1.21689 * 120.00162 * 179.69498 * 8 7 6 10 10 N 1.34773 * 119.99626 * 359.69574 * 8 7 6 11 11 C 1.46506 * 119.99759 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47152 * 35.00409 * 11 10 8 13 13 C 1.53001 * 109.46915 * 155.00125 * 11 10 8 14 14 C 1.52999 * 109.47020 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47135 * 299.99780 * 14 13 11 16 16 H 1.08997 * 109.47357 * 300.00314 * 15 14 13 17 17 C 1.50694 * 109.47536 * 179.97438 * 15 14 13 18 18 N 1.30641 * 119.25334 * 335.00247 * 17 15 14 19 19 C 1.33524 * 121.50686 * 179.97438 * 18 17 15 20 20 C 1.36202 * 119.90626 * 0.25495 * 19 18 17 21 21 C 1.41015 * 118.59699 * 359.48912 * 20 19 18 22 22 O 1.21983 * 120.71216 * 180.28813 * 21 20 19 23 23 N 1.34750 * 119.25536 * 154.97832 * 17 15 14 24 24 C 1.53003 * 109.47192 * 59.99880 * 15 14 13 25 25 C 1.52999 * 109.47178 * 300.00093 * 24 15 14 26 26 C 1.37867 * 107.53383 * 359.63079 * 7 6 5 27 27 H 0.96700 * 113.99914 * 300.00355 * 1 2 3 28 28 H 1.08996 * 109.47211 * 239.99499 * 2 1 3 29 29 H 1.48504 * 109.99762 * 299.99564 * 3 2 1 30 30 H 1.48492 * 110.00091 * 61.31430 * 3 2 1 31 31 H 1.07995 * 125.55801 * 359.94525 * 5 4 2 32 32 H 0.96991 * 125.67456 * 180.26965 * 6 5 4 33 33 H 0.97001 * 120.00324 * 359.97438 * 10 8 7 34 34 H 1.09002 * 109.47402 * 60.00046 * 13 11 10 35 35 H 1.09001 * 109.47210 * 299.99502 * 13 11 10 36 36 H 1.09000 * 109.47388 * 179.97438 * 14 13 11 37 37 H 1.09002 * 109.47150 * 59.99703 * 14 13 11 38 38 H 1.08002 * 120.04250 * 179.97438 * 19 18 17 39 39 H 1.07999 * 120.69931 * 179.74867 * 20 19 18 40 40 H 0.96998 * 120.04253 * 0.02562 * 23 17 15 41 41 H 1.09002 * 109.47039 * 60.00110 * 24 15 14 42 42 H 1.08995 * 109.47393 * 180.02562 * 24 15 14 43 43 H 1.09002 * 109.47653 * 300.00107 * 25 24 15 44 44 H 1.08998 * 109.47165 * 179.97438 * 25 24 15 45 45 H 1.08011 * 126.45438 * 180.25764 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.6330 -0.1497 2.2445 6 7 2.9002 -1.1016 3.1716 7 6 2.3680 -2.2961 2.7418 8 6 2.4354 -3.5795 3.4487 9 8 1.9180 -4.5688 2.9645 10 7 3.0702 -3.6630 4.6346 11 6 3.1370 -4.9448 5.3411 12 1 3.2215 -5.7549 4.6167 13 6 4.3578 -4.9558 6.2633 14 6 4.4279 -6.2946 7.0005 15 6 3.1584 -6.4856 7.8328 16 1 3.0736 -5.6758 8.5574 17 6 3.2271 -7.8045 8.5585 18 7 3.9695 -8.7630 8.0719 19 6 4.0636 -9.9490 8.6781 20 6 3.3713 -10.1806 9.8280 21 6 2.5743 -9.1443 10.3565 22 8 1.9423 -9.3081 11.3869 23 7 2.5217 -7.9683 9.6949 24 6 1.9375 -6.4745 6.9106 25 6 1.8674 -5.1357 6.1734 26 6 1.7553 -2.0652 1.5285 27 1 -0.3933 0.4417 0.7650 28 1 1.7923 -0.5139 -0.8899 29 1 1.5616 2.4678 -1.2086 30 1 1.5879 2.4586 1.2241 31 1 2.9283 0.8873 2.3057 32 1 3.3867 -0.9642 3.9993 33 1 3.4829 -2.8745 5.0205 34 1 4.2733 -4.1457 6.9876 35 1 5.2623 -4.8202 5.6703 36 1 5.2979 -6.3027 7.6572 37 1 4.5126 -7.1045 6.2759 38 1 4.6842 -10.7249 8.2548 39 1 3.4349 -11.1364 10.3268 40 1 1.9772 -7.2424 10.0374 41 1 2.0222 -7.2844 6.1860 42 1 1.0331 -6.6101 7.5035 43 1 1.7828 -4.3258 6.8979 44 1 0.9979 -5.1280 5.5161 45 1 1.2365 -2.7935 0.9227 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_10543058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:27 Heat of formation + Delta-G solvation = -28.156800 kcal Electronic energy + Delta-G solvation = -29182.618861 eV Core-core repulsion = 24974.029495 eV Total energy + Delta-G solvation = -4208.589366 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 345.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.90727 -42.44760 -40.76529 -39.49586 -38.45621 -37.78404 -35.90586 -35.20646 -32.89435 -32.32350 -31.80934 -30.93876 -29.84836 -26.65929 -25.83972 -25.40484 -24.04828 -23.72347 -22.40699 -21.34990 -20.98472 -20.62576 -19.88764 -19.73610 -19.12549 -17.85348 -17.67492 -17.26125 -17.09410 -16.91057 -16.46557 -15.99912 -15.94828 -15.66295 -15.61727 -15.31159 -15.18497 -14.87248 -14.55189 -14.49838 -14.36521 -14.07500 -13.97910 -13.84182 -13.47502 -13.39231 -13.17235 -12.54489 -12.43797 -12.36168 -12.13802 -12.04526 -11.79289 -11.61906 -11.42249 -11.36695 -11.18932 -11.08802 -10.46424 -10.20665 -9.93605 -9.67695 -9.26343 -4.82230 -0.46320 0.40022 0.67080 1.41174 1.55104 1.57792 1.69079 1.96043 2.11129 2.18511 2.30153 2.49408 2.77382 3.40704 3.55768 3.58196 3.63022 3.70688 3.84510 3.96164 4.02133 4.14962 4.16363 4.19954 4.28378 4.34609 4.37768 4.40535 4.49059 4.50654 4.63378 4.75284 4.82230 4.87677 4.91378 5.01299 5.05359 5.06940 5.15436 5.21484 5.30007 5.34392 5.37981 5.46455 5.53754 5.62085 5.76373 6.40592 6.56759 6.64973 6.65888 6.70166 7.12448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.062 4.062 3 Si 0.789 3.211 4 C -0.225 4.225 5 C 0.059 3.941 6 N -0.513 5.513 7 C -0.067 4.067 8 C 0.588 3.412 9 O -0.576 6.576 10 N -0.709 5.709 11 C 0.143 3.857 12 H 0.066 0.934 13 C -0.116 4.116 14 C -0.093 4.093 15 C -0.039 4.039 16 H 0.134 0.866 17 C 0.409 3.591 18 N -0.544 5.544 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.104 4.104 25 C -0.121 4.121 26 C -0.108 4.108 27 H 0.384 0.616 28 H 0.107 0.893 29 H -0.315 1.315 30 H -0.266 1.266 31 H 0.213 0.787 32 H 0.438 0.562 33 H 0.413 0.587 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.198 0.802 39 H 0.158 0.842 40 H 0.429 0.571 41 H 0.062 0.938 42 H 0.076 0.924 43 H 0.092 0.908 44 H 0.048 0.952 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.341 8.794 1.689 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.367 6.367 2 C -0.170 4.170 3 Si 0.693 3.307 4 C -0.231 4.231 5 C -0.079 4.079 6 N -0.110 5.110 7 C -0.180 4.180 8 C 0.377 3.623 9 O -0.455 6.455 10 N -0.360 5.360 11 C 0.039 3.961 12 H 0.084 0.916 13 C -0.154 4.154 14 C -0.132 4.132 15 C -0.059 4.059 16 H 0.151 0.849 17 C 0.145 3.855 18 N -0.268 5.268 19 C 0.034 3.966 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.476 6.476 23 N -0.252 5.252 24 C -0.144 4.144 25 C -0.159 4.159 26 C -0.135 4.135 27 H 0.233 0.767 28 H 0.125 0.875 29 H -0.244 1.244 30 H -0.192 1.192 31 H 0.229 0.771 32 H 0.280 0.720 33 H 0.249 0.751 34 H 0.116 0.884 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.215 0.785 39 H 0.176 0.824 40 H 0.269 0.731 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.067 0.933 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 8.137 8.239 0.953 11.618 hybrid contribution -1.931 -0.392 1.576 2.523 sum 6.205 7.847 2.530 10.319 Atomic orbital electron populations 1.86573 1.19543 1.80548 1.49988 1.24763 0.82549 1.12277 0.97427 0.94261 0.89372 0.70375 0.76701 1.19865 1.08906 0.94334 1.00022 1.22351 1.00595 0.95903 0.89035 1.41832 1.43084 1.06307 1.19820 1.20153 1.11641 0.86846 0.99370 1.17236 0.77881 0.86343 0.80866 1.90858 1.48484 1.37875 1.68283 1.45762 1.56609 1.13398 1.20248 1.21094 0.96130 0.85155 0.93763 0.91569 1.21789 0.96460 0.98741 0.98397 1.21332 0.95341 0.97511 0.98968 1.20677 0.98487 0.88998 0.97750 0.84861 1.23731 0.83159 0.97022 0.81632 1.68392 1.23065 1.01815 1.33479 1.23180 0.91194 0.93338 0.88934 1.23003 1.06399 1.02057 1.02860 1.17661 0.83475 0.83408 0.84497 1.90990 1.48854 1.81760 1.26010 1.44631 1.40984 1.17060 1.22566 1.21495 0.96502 0.98260 0.98105 1.21830 0.97400 0.97722 0.98971 1.21223 1.00521 0.96562 0.95185 0.76697 0.87550 1.24417 1.19208 0.77051 0.72017 0.75062 0.88398 0.89898 0.89806 0.90838 0.78532 0.82393 0.73081 0.91965 0.90496 0.88970 0.93307 0.86075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.47 12.88 -148.98 -1.92 -4.39 16 2 C -0.06 0.02 3.02 71.24 0.22 0.23 16 3 Si 0.79 -4.10 30.60 68.60 2.10 -2.00 16 4 C -0.22 0.20 5.43 -20.12 -0.11 0.09 16 5 C 0.06 -0.48 10.45 83.48 0.87 0.39 16 6 N -0.51 4.64 5.99 -183.62 -1.10 3.54 16 7 C -0.07 -0.02 7.06 40.35 0.28 0.26 16 8 C 0.59 1.67 7.75 86.45 0.67 2.34 16 9 O -0.58 -7.58 16.54 -4.31 -0.07 -7.65 16 10 N -0.71 4.66 5.07 -446.49 -2.27 2.40 16 11 C 0.14 -0.89 2.45 44.99 0.11 -0.78 16 12 H 0.07 0.03 7.58 -2.39 -0.02 0.01 16 13 C -0.12 1.44 5.39 30.59 0.16 1.60 16 14 C -0.09 0.93 4.67 30.59 0.14 1.08 16 15 C -0.04 0.40 2.48 -11.54 -0.03 0.37 16 16 H 0.13 -2.14 8.14 -2.39 -0.02 -2.16 16 17 C 0.41 -1.76 6.73 138.18 0.93 -0.83 16 18 N -0.54 0.87 9.11 -187.55 -1.71 -0.84 16 19 C 0.17 -0.28 11.20 83.96 0.94 0.66 16 20 C -0.32 -0.95 10.07 22.48 0.23 -0.72 16 21 C 0.51 3.60 7.75 84.88 0.66 4.26 16 22 O -0.59 -9.81 17.97 -5.26 -0.09 -9.91 16 23 N -0.61 1.04 5.25 -310.69 -1.63 -0.59 16 24 C -0.10 0.77 5.18 30.60 0.16 0.93 16 25 C -0.12 0.80 5.50 30.60 0.17 0.97 16 26 C -0.11 -0.53 10.59 22.57 0.24 -0.29 16 27 H 0.38 -0.81 8.70 -74.06 -0.64 -1.46 16 28 H 0.11 0.05 7.96 -2.39 -0.02 0.03 16 29 H -0.32 -1.42 7.11 99.48 0.71 -0.71 16 30 H -0.27 1.10 7.11 99.48 0.71 1.81 16 31 H 0.21 -3.32 6.21 -2.91 -0.02 -3.33 16 32 H 0.44 -7.62 8.19 -92.71 -0.76 -8.38 16 33 H 0.41 -5.95 7.73 -92.71 -0.72 -6.66 16 34 H 0.10 -1.67 8.14 -2.39 -0.02 -1.69 16 35 H 0.08 -1.01 8.14 -2.39 -0.02 -1.03 16 36 H 0.08 -0.89 8.14 -2.39 -0.02 -0.90 16 37 H 0.07 -0.43 7.76 -2.39 -0.02 -0.45 16 38 H 0.20 -1.54 8.06 -2.91 -0.02 -1.57 16 39 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 40 H 0.43 -2.78 8.78 -92.71 -0.81 -3.59 16 41 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 42 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.09 -1.02 8.14 -2.39 -0.02 -1.04 16 44 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 45 H 0.12 1.17 8.06 -2.90 -0.02 1.15 16 Total: 0.00 -36.60 375.57 -2.87 -39.47 By element: Atomic # 1 Polarization: -28.76 SS G_CDS: -1.82 Total: -30.58 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: 5.64 Total: 10.55 kcal Atomic # 7 Polarization: 11.22 SS G_CDS: -6.71 Total: 4.51 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -2.08 Total: -21.95 kcal Atomic # 14 Polarization: -4.10 SS G_CDS: 2.10 Total: -2.00 kcal Total: -36.60 -2.87 -39.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_10543058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.310 kcal (2) G-P(sol) polarization free energy of solvation -36.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds