Wall clock time and date at job start Sun Mar 7 2021 03:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.35536 * 125.67797 * 2 1 4 4 C 1.35450 * 108.87409 * 180.26167 * 3 2 1 5 5 C 1.50703 * 126.06681 * 179.73998 * 4 3 2 6 6 O 1.42901 * 109.46730 * 120.02824 * 5 4 3 7 7 Si 1.86301 * 109.47359 * 0.02855 * 5 4 3 8 8 C 1.39834 * 107.86508 * 359.76715 * 4 3 2 9 9 C 1.37645 * 125.68371 * 179.86086 * 2 1 3 10 10 C 1.46680 * 126.23027 * 0.02562 * 9 2 1 11 11 O 1.21702 * 120.00151 * 4.41009 * 10 9 2 12 12 N 1.34777 * 120.00446 * 184.40892 * 10 9 2 13 13 C 1.46493 * 120.00245 * 174.41435 * 12 10 9 14 14 H 1.09000 * 109.47295 * 35.00020 * 13 12 10 15 15 C 1.53000 * 109.47076 * 155.00067 * 13 12 10 16 16 C 1.53006 * 109.47090 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46867 * 299.99750 * 16 15 13 18 18 H 1.09000 * 109.47240 * 300.00227 * 17 16 15 19 19 C 1.50697 * 109.47141 * 180.02562 * 17 16 15 20 20 N 1.30643 * 119.25396 * 264.72944 * 19 17 16 21 21 C 1.33517 * 121.50418 * 179.75837 * 20 19 17 22 22 C 1.36202 * 119.91114 * 0.50636 * 21 20 19 23 23 C 1.41016 * 118.59173 * 359.75791 * 22 21 20 24 24 O 1.21982 * 120.70789 * 180.02562 * 23 22 21 25 25 N 1.34750 * 119.25794 * 84.99602 * 19 17 16 26 26 C 1.53000 * 109.47062 * 60.00232 * 17 16 15 27 27 C 1.52998 * 109.46867 * 299.99657 * 26 17 16 28 28 H 1.09000 * 109.47205 * 270.87671 * 1 2 3 29 29 H 1.09000 * 109.47338 * 30.87827 * 1 2 3 30 30 H 1.09004 * 109.47096 * 150.87710 * 1 2 3 31 31 H 1.08008 * 125.56163 * 359.97438 * 3 2 1 32 32 H 1.08993 * 109.47334 * 240.02230 * 5 4 3 33 33 H 0.96700 * 113.99999 * 180.02562 * 6 5 4 34 34 H 1.48503 * 109.99663 * 298.68050 * 7 5 4 35 35 H 1.48501 * 109.99902 * 59.99327 * 7 5 4 36 36 H 1.07996 * 126.45895 * 180.02562 * 8 4 3 37 37 H 0.97001 * 119.99222 * 354.41227 * 12 10 9 38 38 H 1.09000 * 109.47566 * 60.00083 * 15 13 12 39 39 H 1.08998 * 109.47286 * 299.99438 * 15 13 12 40 40 H 1.08998 * 109.47165 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.47376 * 59.99894 * 16 15 13 42 42 H 1.08002 * 120.04667 * 180.26171 * 21 20 19 43 43 H 1.07999 * 120.70349 * 179.77425 * 22 21 20 44 44 H 0.97001 * 120.03688 * 0.02562 * 25 19 17 45 45 H 1.08990 * 109.47089 * 59.99940 * 26 17 16 46 46 H 1.08997 * 109.46837 * 180.02562 * 26 17 16 47 47 H 1.08998 * 109.46942 * 180.02562 * 27 26 17 48 48 H 1.09000 * 109.47466 * 300.00024 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2554 1.1010 0.0000 4 6 3.5521 0.7094 -0.0059 5 6 4.7536 1.6191 -0.0134 6 8 5.5461 1.3709 1.1495 7 14 4.1885 3.3943 -0.0127 8 6 3.5780 -0.6887 -0.0043 9 6 2.2679 -1.1180 0.0027 10 6 1.8125 -2.5123 0.0056 11 8 0.6247 -2.7648 -0.0754 12 7 2.7094 -3.5141 0.0978 13 6 2.2500 -4.8994 0.2240 14 1 1.3372 -5.0338 -0.3564 15 6 3.3320 -5.8453 -0.3009 16 6 2.8519 -7.2922 -0.1697 17 6 2.5710 -7.6048 1.3014 18 1 3.4837 -7.4708 1.8821 19 6 2.0987 -9.0300 1.4308 20 7 0.8163 -9.2777 1.4573 21 6 0.3484 -10.5235 1.5658 22 6 1.2161 -11.5689 1.6620 23 6 2.6004 -11.3013 1.6388 24 8 3.4117 -12.2084 1.7218 25 7 3.0087 -10.0197 1.5220 26 6 1.4891 -6.6589 1.8263 27 6 1.9692 -5.2121 1.6951 28 1 -0.3633 0.0157 1.0275 29 1 -0.3634 0.8820 -0.5274 30 1 -0.3633 -0.8978 -0.5002 31 1 1.9081 2.1237 -0.0004 32 1 5.3487 1.4275 -0.9062 33 1 6.3379 1.9227 1.2110 34 1 3.3898 3.6735 -1.2331 35 1 3.3759 3.6682 1.1997 36 1 4.4583 -1.3143 -0.0074 37 1 3.6592 -3.3177 0.0806 38 1 4.2448 -5.7110 0.2794 39 1 3.5317 -5.6229 -1.3491 40 1 3.6225 -7.9660 -0.5441 41 1 1.9392 -7.4262 -0.7503 42 1 -0.7167 -10.7017 1.5812 43 1 0.8516 -12.5814 1.7539 44 1 3.9560 -9.8114 1.5044 45 1 0.5764 -6.7930 1.2458 46 1 1.2893 -6.8814 2.8745 47 1 1.1986 -4.5383 2.0695 48 1 2.8819 -5.0781 2.2757 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_10803934.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:31 Heat of formation + Delta-G solvation = -14.140444 kcal Electronic energy + Delta-G solvation = -31540.269032 eV Core-core repulsion = 27176.749841 eV Total energy + Delta-G solvation = -4363.519191 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.86914 -42.57240 -40.80179 -39.41598 -38.36114 -37.65862 -35.92109 -35.22490 -34.01871 -32.69133 -32.03552 -31.22260 -29.83505 -28.38474 -26.10579 -25.62984 -25.30736 -24.09336 -23.73273 -22.44817 -21.32570 -20.96043 -20.34260 -19.75066 -19.10358 -18.67172 -18.28036 -17.83085 -17.32254 -17.18489 -16.91304 -16.67039 -16.08824 -15.78952 -15.64829 -15.55448 -15.33491 -15.28308 -15.07879 -14.96471 -14.51713 -14.36506 -14.11670 -14.09601 -14.06127 -13.68387 -13.56664 -13.37022 -13.22178 -13.18811 -12.62151 -12.53316 -12.44256 -12.32934 -12.10303 -11.93968 -11.73073 -11.53611 -11.20732 -11.10190 -10.97777 -10.29829 -10.16973 -9.68196 -9.56588 -9.27891 -5.01867 -0.47280 0.41197 0.78665 1.28534 1.43902 1.53166 1.57155 1.67279 1.98496 2.23019 2.35438 2.54669 2.67429 3.26015 3.41162 3.43589 3.50834 3.59515 3.68782 3.79340 3.80938 3.87268 3.92764 3.98287 4.06879 4.11785 4.19292 4.23852 4.24754 4.26057 4.33912 4.42399 4.51213 4.55928 4.58288 4.61695 4.73742 4.74306 4.78584 4.87855 4.92794 5.03599 5.09120 5.14997 5.26386 5.38169 5.42650 5.43994 5.62458 5.87309 6.06199 6.41703 6.69783 6.70072 6.79606 7.14265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.403 5.403 3 C 0.019 3.981 4 C -0.162 4.162 5 C -0.033 4.033 6 O -0.548 6.548 7 Si 0.682 3.318 8 C -0.109 4.109 9 C -0.053 4.053 10 C 0.595 3.405 11 O -0.544 6.544 12 N -0.716 5.716 13 C 0.145 3.855 14 H 0.096 0.904 15 C -0.124 4.124 16 C -0.107 4.107 17 C -0.047 4.047 18 H 0.102 0.898 19 C 0.403 3.597 20 N -0.532 5.532 21 C 0.156 3.844 22 C -0.293 4.293 23 C 0.520 3.480 24 O -0.537 6.537 25 N -0.627 5.627 26 C -0.096 4.096 27 C -0.131 4.131 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.164 0.836 32 H 0.071 0.929 33 H 0.380 0.620 34 H -0.257 1.257 35 H -0.253 1.253 36 H 0.147 0.853 37 H 0.403 0.597 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.170 0.830 43 H 0.157 0.843 44 H 0.417 0.583 45 H 0.089 0.911 46 H 0.073 0.927 47 H 0.074 0.926 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.147 6.356 -1.471 7.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.075 5.075 3 C -0.117 4.117 4 C -0.169 4.169 5 C -0.145 4.145 6 O -0.353 6.353 7 Si 0.583 3.417 8 C -0.135 4.135 9 C -0.167 4.167 10 C 0.383 3.617 11 O -0.423 6.423 12 N -0.367 5.367 13 C 0.041 3.959 14 H 0.114 0.886 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.067 4.067 18 H 0.120 0.880 19 C 0.138 3.862 20 N -0.255 5.255 21 C 0.018 3.982 22 C -0.318 4.318 23 C 0.318 3.682 24 O -0.415 6.415 25 N -0.265 5.265 26 C -0.134 4.134 27 C -0.170 4.170 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.181 0.819 32 H 0.089 0.911 33 H 0.227 0.773 34 H -0.182 1.182 35 H -0.178 1.178 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.094 0.906 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.188 0.812 43 H 0.175 0.825 44 H 0.256 0.744 45 H 0.107 0.893 46 H 0.092 0.908 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.365 6.046 -1.381 6.213 hybrid contribution 1.197 -0.979 0.011 1.547 sum 1.561 5.067 -1.370 5.476 Atomic orbital electron populations 1.22400 0.75422 1.05806 1.04318 1.43756 1.07039 1.04579 1.52108 1.21656 0.90299 0.91442 1.08351 1.18701 0.92025 0.94008 1.12125 1.23924 0.92692 1.07455 0.90382 1.86499 1.40153 1.65846 1.42834 0.95299 0.87138 0.78844 0.80418 1.21152 0.94325 0.94329 1.03672 1.20043 0.90219 0.87651 1.18759 1.16909 0.85608 0.83401 0.75796 1.90800 1.16191 1.84717 1.50625 1.45668 1.09817 1.06111 1.75107 1.21061 0.98668 0.79240 0.96893 0.88640 1.21784 0.98308 0.93551 1.02592 1.21541 1.02955 0.96523 0.93613 1.20563 1.00769 0.86182 0.99179 0.88020 1.23201 0.85598 0.91426 0.86000 1.68306 1.10587 1.23155 1.23475 1.22769 1.01345 0.86707 0.87376 1.22977 0.91777 1.03020 1.13993 1.17352 0.91110 0.81240 0.78480 1.91029 1.56313 1.42656 1.51522 1.44771 1.12553 1.08748 1.60475 1.21379 0.97835 0.91808 1.02394 1.21984 1.02308 0.96680 0.96030 0.90243 0.89734 0.87225 0.81890 0.91147 0.77334 1.18196 1.17785 0.83483 0.76142 0.90637 0.90201 0.90746 0.90049 0.81245 0.82523 0.74376 0.89286 0.90818 0.90702 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.02 10.65 59.84 0.64 0.66 16 2 N -0.40 -0.95 3.16 -120.24 -0.38 -1.33 16 3 C 0.02 0.04 9.94 -16.91 -0.17 -0.13 16 4 C -0.16 -0.32 5.47 -105.02 -0.57 -0.90 16 5 C -0.03 0.02 3.01 36.01 0.11 0.12 16 6 O -0.55 0.14 12.86 -35.23 -0.45 -0.31 16 7 Si 0.68 -1.08 30.59 -169.99 -5.20 -6.28 16 8 C -0.11 -0.16 10.29 -39.12 -0.40 -0.56 16 9 C -0.05 -0.13 6.89 -81.98 -0.56 -0.69 16 10 C 0.59 1.30 7.74 -12.85 -0.10 1.20 16 11 O -0.54 -2.65 14.26 5.19 0.07 -2.57 16 12 N -0.72 0.86 5.06 -55.11 -0.28 0.58 16 13 C 0.15 -0.30 2.50 -67.93 -0.17 -0.47 16 14 H 0.10 0.00 7.50 -51.93 -0.39 -0.39 16 15 C -0.12 0.55 5.39 -26.73 -0.14 0.40 16 16 C -0.11 0.45 5.19 -26.73 -0.14 0.31 16 17 C -0.05 0.18 2.48 -91.77 -0.23 -0.05 16 18 H 0.10 -0.57 8.14 -51.93 -0.42 -0.99 16 19 C 0.40 -0.56 6.73 -155.56 -1.05 -1.60 16 20 N -0.53 -0.01 9.11 -10.63 -0.10 -0.11 16 21 C 0.16 -0.04 11.20 -17.55 -0.20 -0.24 16 22 C -0.29 -0.38 10.07 -39.26 -0.40 -0.77 16 23 C 0.52 1.62 7.75 -15.10 -0.12 1.50 16 24 O -0.54 -3.92 17.97 4.93 0.09 -3.83 16 25 N -0.63 0.39 5.25 -12.27 -0.06 0.33 16 26 C -0.10 0.24 4.67 -26.73 -0.12 0.11 16 27 C -0.13 0.28 5.50 -26.73 -0.15 0.13 16 28 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 29 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 30 H 0.11 0.17 6.19 -51.93 -0.32 -0.15 16 31 H 0.16 0.08 6.19 -52.48 -0.32 -0.24 16 32 H 0.07 -0.14 7.96 -51.93 -0.41 -0.55 16 33 H 0.38 -2.00 8.74 45.56 0.40 -1.60 16 34 H -0.26 -0.20 7.11 56.52 0.40 0.20 16 35 H -0.25 -0.43 7.11 56.52 0.40 -0.03 16 36 H 0.15 -0.14 7.45 -52.49 -0.39 -0.53 16 37 H 0.40 -1.35 7.50 -40.82 -0.31 -1.65 16 38 H 0.07 -0.42 8.14 -51.93 -0.42 -0.84 16 39 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 40 H 0.07 -0.36 8.14 -51.93 -0.42 -0.79 16 41 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 42 H 0.17 -0.50 8.06 -52.49 -0.42 -0.92 16 43 H 0.16 0.06 8.06 -52.49 -0.42 -0.36 16 44 H 0.42 -1.23 8.78 -40.82 -0.36 -1.59 16 45 H 0.09 -0.10 7.76 -51.93 -0.40 -0.50 16 46 H 0.07 -0.15 8.14 -51.93 -0.42 -0.57 16 47 H 0.07 0.01 8.14 -51.93 -0.42 -0.41 16 48 H 0.07 -0.20 8.14 -51.93 -0.42 -0.62 16 LS Contribution 393.54 15.07 5.93 5.93 Total: 0.00 -12.62 393.54 -10.93 -23.55 By element: Atomic # 1 Polarization: -8.21 SS G_CDS: -6.78 Total: -14.99 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -3.77 Total: -0.98 kcal Atomic # 7 Polarization: 0.30 SS G_CDS: -0.82 Total: -0.52 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.29 Total: -6.71 kcal Atomic # 14 Polarization: -1.08 SS G_CDS: -5.20 Total: -6.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -12.62 -10.93 -23.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_10803934.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.411 kcal (2) G-P(sol) polarization free energy of solvation -12.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds