Wall clock time and date at job start Sun Mar 7 2021 03:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86306 * 109.47024 * 2 1 4 4 C 1.50694 * 109.46877 * 119.99937 * 2 1 3 5 5 C 1.36451 * 120.29431 * 120.00302 * 4 2 1 6 6 C 1.40094 * 119.25472 * 179.97438 * 5 4 2 7 7 C 1.40853 * 132.86598 * 180.02562 * 6 5 4 8 8 C 1.46561 * 126.58215 * 359.97438 * 7 6 5 9 9 O 1.21721 * 120.00145 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00281 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00270 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 34.99540 * 11 10 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 C 1.50693 * 109.47531 * 180.02562 * 15 14 13 18 18 N 1.30637 * 119.25164 * 335.00955 * 17 15 14 19 19 C 1.33528 * 121.50691 * 179.97438 * 18 17 15 20 20 C 1.36201 * 119.90787 * 359.97438 * 19 18 17 21 21 C 1.41028 * 118.59130 * 0.02562 * 20 19 18 22 22 O 1.21981 * 120.70686 * 180.02562 * 21 20 19 23 23 N 1.34748 * 119.25781 * 154.72570 * 17 15 14 24 24 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 25 25 C 1.52999 * 109.46944 * 275.00142 * 11 10 8 26 26 C 1.40557 * 106.84082 * 180.24654 * 7 6 5 27 27 N 1.30737 * 108.73932 * 359.59141 * 26 7 6 28 28 N 1.36580 * 120.22928 * 0.02620 * 6 5 4 29 29 C 1.36238 * 120.08104 * 359.96118 * 28 6 5 30 30 C 1.35191 * 120.70763 * 0.02562 * 29 28 6 31 31 H 0.96696 * 113.99548 * 300.00189 * 1 2 3 32 32 H 1.09005 * 109.47170 * 240.00206 * 2 1 3 33 33 H 1.48495 * 109.99663 * 299.99705 * 3 2 1 34 34 H 1.48491 * 109.99846 * 61.31911 * 3 2 1 35 35 H 1.07997 * 120.37272 * 0.03849 * 5 4 2 36 36 H 0.97000 * 120.00239 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 40 40 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 41 41 H 1.07997 * 120.04697 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.70501 * 179.97438 * 20 19 18 43 43 H 0.97004 * 120.03597 * 0.02585 * 23 17 15 44 44 H 1.09002 * 109.47153 * 60.00231 * 24 15 14 45 45 H 1.09001 * 109.47289 * 180.02562 * 24 15 14 46 46 H 1.09000 * 109.47486 * 59.99569 * 25 11 10 47 47 H 1.09002 * 109.46716 * 299.99651 * 25 11 10 48 48 H 1.07998 * 125.62732 * 179.76726 * 26 7 6 49 49 H 1.08006 * 119.64575 * 180.02562 * 29 28 6 50 50 H 1.07993 * 119.84138 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.7162 -1.8203 1.1123 6 6 3.1715 -2.4633 2.2706 7 6 3.9760 -3.6000 2.4823 8 6 4.5765 -4.4496 1.4500 9 8 4.3962 -4.1969 0.2731 10 7 5.3283 -5.5107 1.8039 11 6 5.9290 -6.3597 0.7721 12 1 6.2160 -5.7458 -0.0817 13 6 7.1682 -7.0540 1.3405 14 6 7.7958 -7.9401 0.2627 15 6 6.7813 -8.9940 -0.1856 16 1 6.4942 -9.6081 0.6679 17 6 7.3997 -9.8672 -1.2468 18 7 8.3770 -9.3940 -1.9731 19 6 8.9578 -10.1284 -2.9251 20 6 8.5323 -11.4017 -3.1550 21 6 7.4772 -11.9126 -2.3710 22 8 7.0661 -13.0479 -2.5437 23 7 6.9359 -11.1202 -1.4212 24 6 5.5421 -8.2997 -0.7541 25 6 4.9142 -7.4135 0.3243 26 6 4.0872 -3.7668 3.8735 27 7 3.4185 -2.8122 4.4658 28 7 2.8313 -1.9825 3.5029 29 6 2.0474 -0.8734 3.6106 30 6 1.5968 -0.2366 2.5064 31 1 -0.3932 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 1.5615 2.4678 -1.2085 34 1 1.5879 2.4585 1.2242 35 1 2.9842 -2.1982 0.1367 36 1 5.4723 -5.7120 2.7418 37 1 6.8812 -7.6678 2.1944 38 1 7.8911 -6.3031 1.6595 39 1 8.0829 -7.3259 -0.5908 40 1 8.6784 -8.4350 0.6678 41 1 9.7643 -9.7137 -3.5115 42 1 8.9926 -12.0069 -3.9220 43 1 6.2116 -11.4514 -0.8673 44 1 5.8292 -7.6855 -1.6076 45 1 4.8192 -9.0505 -1.0731 46 1 4.0313 -6.9189 -0.0807 47 1 4.6272 -8.0273 1.1781 48 1 4.6369 -4.5521 4.3710 49 1 1.7830 -0.4990 4.5886 50 1 0.9759 0.6411 2.6081 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_11618758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:39 Heat of formation + Delta-G solvation = 39.755640 kcal Electronic energy + Delta-G solvation = -35844.265077 eV Core-core repulsion = 31032.978663 eV Total energy + Delta-G solvation = -4811.286413 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.163 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.33470 -42.83333 -40.85748 -39.61716 -39.24666 -38.29983 -37.36997 -35.80048 -35.04471 -34.25654 -32.54923 -32.14650 -31.97314 -30.80534 -29.67826 -27.34491 -25.92723 -25.39429 -24.93981 -23.89306 -23.78243 -23.15192 -22.41511 -21.35964 -20.83965 -19.72886 -19.18525 -18.97161 -18.68671 -18.06850 -17.81623 -17.58259 -17.03917 -17.01520 -16.91566 -16.56698 -16.10272 -15.93603 -15.77998 -15.56548 -15.54654 -15.39140 -15.16651 -14.92367 -14.75274 -14.42174 -14.28067 -14.05414 -13.98820 -13.87075 -13.58698 -13.50962 -13.31819 -13.26030 -12.59589 -12.54119 -12.42896 -12.29758 -12.11878 -12.02249 -11.94868 -11.74797 -11.58344 -11.42572 -11.17571 -11.08595 -10.94231 -10.75329 -10.40208 -10.02736 -9.53976 -8.80065 -5.08270 -0.59315 -0.44430 -0.19531 0.81115 0.95504 1.04239 1.08927 1.45466 1.58724 1.78163 2.03000 2.20068 2.57293 2.58148 2.70811 3.01709 3.11118 3.23994 3.29293 3.38844 3.47633 3.56076 3.59444 3.63591 3.80740 3.82213 3.94979 4.01528 4.02568 4.09365 4.18299 4.20687 4.23166 4.26225 4.31941 4.33296 4.46965 4.50390 4.54642 4.64304 4.68058 4.83792 4.89148 4.91600 4.98454 5.03410 5.06469 5.12123 5.16953 5.22077 5.28747 5.43539 5.45644 5.55466 5.59966 6.18706 6.27516 6.59447 6.72267 6.82096 7.38362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.521 6.521 2 C -0.075 4.075 3 Si 0.696 3.304 4 C -0.066 4.066 5 C -0.090 4.090 6 C 0.170 3.830 7 C -0.316 4.316 8 C 0.603 3.397 9 O -0.547 6.547 10 N -0.727 5.727 11 C 0.147 3.853 12 H 0.094 0.906 13 C -0.128 4.128 14 C -0.095 4.095 15 C -0.046 4.046 16 H 0.101 0.899 17 C 0.404 3.596 18 N -0.533 5.533 19 C 0.157 3.843 20 C -0.294 4.294 21 C 0.520 3.480 22 O -0.538 6.538 23 N -0.627 5.627 24 C -0.108 4.108 25 C -0.127 4.127 26 C 0.120 3.880 27 N -0.313 5.313 28 N -0.267 5.267 29 C 0.123 3.877 30 C -0.162 4.162 31 H 0.375 0.625 32 H 0.127 0.873 33 H -0.247 1.247 34 H -0.253 1.253 35 H 0.165 0.835 36 H 0.398 0.602 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.170 0.830 42 H 0.157 0.843 43 H 0.417 0.583 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.068 0.932 48 H 0.199 0.801 49 H 0.177 0.823 50 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.670 5.317 4.856 7.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.327 6.327 2 C -0.184 4.184 3 Si 0.594 3.406 4 C -0.072 4.072 5 C -0.109 4.109 6 C 0.049 3.951 7 C -0.330 4.330 8 C 0.392 3.608 9 O -0.426 6.426 10 N -0.377 5.377 11 C 0.043 3.957 12 H 0.112 0.888 13 C -0.166 4.166 14 C -0.134 4.134 15 C -0.067 4.067 16 H 0.119 0.881 17 C 0.138 3.862 18 N -0.256 5.256 19 C 0.018 3.982 20 C -0.318 4.318 21 C 0.318 3.682 22 O -0.416 6.416 23 N -0.266 5.266 24 C -0.147 4.147 25 C -0.166 4.166 26 C -0.061 4.061 27 N -0.134 5.134 28 N -0.031 5.031 29 C -0.003 4.003 30 C -0.183 4.183 31 H 0.223 0.777 32 H 0.144 0.856 33 H -0.171 1.171 34 H -0.177 1.177 35 H 0.183 0.817 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.093 0.907 41 H 0.188 0.812 42 H 0.174 0.826 43 H 0.256 0.744 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.095 0.905 47 H 0.087 0.913 48 H 0.215 0.785 49 H 0.194 0.806 50 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.408 6.453 4.437 7.957 hybrid contribution -1.272 -1.753 0.460 2.215 sum 0.136 4.700 4.897 6.789 Atomic orbital electron populations 1.86710 1.16866 1.80015 1.49158 1.25080 0.84311 1.11345 0.97693 0.94412 0.91661 0.73245 0.81288 1.20416 0.96163 0.95048 0.95528 1.20700 0.97965 0.94101 0.98179 1.19303 0.95520 0.94157 0.86156 1.19631 1.16160 1.03691 0.93567 1.16811 0.77428 0.79319 0.87277 1.90790 1.61207 1.72085 1.18474 1.45754 1.53016 1.28989 1.09969 1.20992 0.92004 0.91179 0.91559 0.88787 1.21859 0.96757 0.99352 0.98681 1.21365 0.96520 0.96064 0.99410 1.20567 0.96598 0.95824 0.93686 0.88133 1.23223 0.88228 0.82097 0.92604 1.68300 1.11261 1.35689 1.10346 1.22765 0.94958 0.90013 0.90435 1.22972 1.02643 0.99313 1.06906 1.17360 0.84442 0.85808 0.80584 1.91028 1.63917 1.17675 1.68939 1.44775 1.34388 1.13797 1.33592 1.21575 0.94714 0.99158 0.99303 1.21926 0.99122 0.97028 0.98507 1.24070 0.94334 0.95703 0.92009 1.77642 1.18645 1.06297 1.10775 1.46077 1.32133 1.19008 1.05875 1.21515 0.91902 0.85137 1.01741 1.20708 1.04329 1.02597 0.90715 0.77713 0.85557 1.17118 1.17693 0.81711 0.76838 0.91131 0.90313 0.89183 0.90667 0.81242 0.82551 0.74380 0.90125 0.91182 0.90453 0.91334 0.78487 0.80583 0.82615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.52 0.21 12.88 -35.23 -0.45 -0.24 16 2 C -0.08 0.13 2.84 36.00 0.10 0.24 16 3 Si 0.70 -1.80 31.97 -169.99 -5.43 -7.23 16 4 C -0.07 0.08 4.53 -104.55 -0.47 -0.39 16 5 C -0.09 -0.06 9.35 -39.53 -0.37 -0.43 16 6 C 0.17 0.31 6.76 -84.07 -0.57 -0.26 16 7 C -0.32 -0.39 6.17 -104.68 -0.65 -1.03 16 8 C 0.60 0.85 7.75 -12.90 -0.10 0.75 16 9 O -0.55 -2.48 15.37 5.17 0.08 -2.40 16 10 N -0.73 1.50 5.07 -55.15 -0.28 1.22 16 11 C 0.15 -0.36 2.45 -67.93 -0.17 -0.53 16 12 H 0.09 -0.03 7.58 -51.93 -0.39 -0.42 16 13 C -0.13 0.57 5.39 -26.73 -0.14 0.43 16 14 C -0.10 0.36 4.67 -26.73 -0.12 0.23 16 15 C -0.05 0.18 2.48 -91.78 -0.23 -0.05 16 16 H 0.10 -0.57 8.14 -51.93 -0.42 -1.00 16 17 C 0.40 -0.58 6.73 -155.57 -1.05 -1.63 16 18 N -0.53 0.14 9.11 -10.64 -0.10 0.05 16 19 C 0.16 -0.07 11.20 -17.55 -0.20 -0.27 16 20 C -0.29 -0.37 10.07 -39.26 -0.40 -0.76 16 21 C 0.52 1.66 7.75 -15.09 -0.12 1.54 16 22 O -0.54 -3.99 17.97 4.94 0.09 -3.90 16 23 N -0.63 0.31 5.25 -12.27 -0.06 0.24 16 24 C -0.11 0.35 5.19 -26.70 -0.14 0.21 16 25 C -0.13 0.34 5.50 -26.70 -0.15 0.19 16 26 C 0.12 -0.05 11.44 -17.14 -0.20 -0.24 16 27 N -0.31 -0.55 12.57 30.75 0.39 -0.16 16 28 N -0.27 -0.33 3.86 -10.54 -0.04 -0.37 16 29 C 0.12 -0.19 11.17 -16.68 -0.19 -0.37 16 30 C -0.16 0.42 8.38 -39.95 -0.33 0.08 16 31 H 0.38 -1.50 8.08 45.56 0.37 -1.13 16 32 H 0.13 -0.27 7.71 -51.93 -0.40 -0.67 16 33 H -0.25 -0.17 7.11 56.52 0.40 0.23 16 34 H -0.25 0.38 7.05 56.52 0.40 0.78 16 35 H 0.17 0.15 7.01 -52.49 -0.37 -0.22 16 36 H 0.40 -1.88 7.52 -40.82 -0.31 -2.19 16 37 H 0.07 -0.39 8.14 -51.93 -0.42 -0.81 16 38 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 39 H 0.09 -0.22 7.76 -51.93 -0.40 -0.63 16 40 H 0.07 -0.27 8.14 -51.93 -0.42 -0.69 16 41 H 0.17 -0.54 8.06 -52.49 -0.42 -0.97 16 42 H 0.16 0.06 8.06 -52.49 -0.42 -0.37 16 43 H 0.42 -1.11 8.78 -40.82 -0.36 -1.47 16 44 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 45 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 46 H 0.08 -0.02 8.14 -51.93 -0.42 -0.44 16 47 H 0.07 -0.25 8.14 -51.93 -0.42 -0.67 16 48 H 0.20 -0.94 7.46 -52.49 -0.39 -1.33 16 49 H 0.18 -0.74 8.06 -52.48 -0.42 -1.16 16 50 H 0.16 -0.82 7.26 -52.49 -0.38 -1.20 16 LS Contribution 416.49 15.07 6.28 6.28 Total: 0.00 -13.69 416.49 -11.50 -25.19 By element: Atomic # 1 Polarization: -9.87 SS G_CDS: -6.49 Total: -16.36 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -5.48 Total: -2.31 kcal Atomic # 7 Polarization: 1.07 SS G_CDS: -0.09 Total: 0.97 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.29 Total: -6.54 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: -5.43 Total: -7.23 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -13.69 -11.50 -25.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_11618758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.946 kcal (2) G-P(sol) polarization free energy of solvation -13.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds