Wall clock time and date at job start Sun Mar 7 2021 03:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86306 * 109.47024 * 2 1 4 4 C 1.50694 * 109.46877 * 119.99937 * 2 1 3 5 5 C 1.36451 * 120.29431 * 120.00302 * 4 2 1 6 6 C 1.40094 * 119.25472 * 179.97438 * 5 4 2 7 7 C 1.40853 * 132.86598 * 180.02562 * 6 5 4 8 8 C 1.46561 * 126.58215 * 359.97438 * 7 6 5 9 9 O 1.21721 * 120.00145 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00281 * 179.97438 * 8 7 6 11 11 C 1.46500 * 120.00270 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47129 * 34.99540 * 11 10 8 13 13 C 1.52997 * 109.47473 * 154.99797 * 11 10 8 14 14 C 1.53000 * 109.47060 * 180.02562 * 13 11 10 15 15 C 1.53002 * 109.47233 * 299.99657 * 14 13 11 16 16 H 1.09002 * 109.47075 * 300.00932 * 15 14 13 17 17 C 1.50693 * 109.47531 * 180.02562 * 15 14 13 18 18 N 1.30637 * 119.25164 * 335.00955 * 17 15 14 19 19 C 1.33528 * 121.50691 * 179.97438 * 18 17 15 20 20 C 1.36201 * 119.90787 * 359.97438 * 19 18 17 21 21 C 1.41028 * 118.59130 * 0.02562 * 20 19 18 22 22 O 1.21981 * 120.70686 * 180.02562 * 21 20 19 23 23 N 1.34748 * 119.25781 * 154.72570 * 17 15 14 24 24 C 1.52997 * 109.46817 * 60.00194 * 15 14 13 25 25 C 1.52999 * 109.46944 * 275.00142 * 11 10 8 26 26 C 1.40557 * 106.84082 * 180.24654 * 7 6 5 27 27 N 1.30737 * 108.73932 * 359.59141 * 26 7 6 28 28 N 1.36580 * 120.22928 * 0.02620 * 6 5 4 29 29 C 1.36238 * 120.08104 * 359.96118 * 28 6 5 30 30 C 1.35191 * 120.70763 * 0.02562 * 29 28 6 31 31 H 0.96696 * 113.99548 * 300.00189 * 1 2 3 32 32 H 1.09005 * 109.47170 * 240.00206 * 2 1 3 33 33 H 1.48495 * 109.99663 * 299.99705 * 3 2 1 34 34 H 1.48491 * 109.99846 * 61.31911 * 3 2 1 35 35 H 1.07997 * 120.37272 * 0.03849 * 5 4 2 36 36 H 0.97000 * 120.00239 * 359.97438 * 10 8 7 37 37 H 1.09002 * 109.47153 * 59.99757 * 13 11 10 38 38 H 1.09001 * 109.46832 * 299.99948 * 13 11 10 39 39 H 1.08992 * 109.47399 * 59.99823 * 14 13 11 40 40 H 1.09004 * 109.46724 * 180.02562 * 14 13 11 41 41 H 1.07997 * 120.04697 * 180.02562 * 19 18 17 42 42 H 1.08000 * 120.70501 * 179.97438 * 20 19 18 43 43 H 0.97004 * 120.03597 * 0.02585 * 23 17 15 44 44 H 1.09002 * 109.47153 * 60.00231 * 24 15 14 45 45 H 1.09001 * 109.47289 * 180.02562 * 24 15 14 46 46 H 1.09000 * 109.47486 * 59.99569 * 25 11 10 47 47 H 1.09002 * 109.46716 * 299.99651 * 25 11 10 48 48 H 1.07998 * 125.62732 * 179.76726 * 26 7 6 49 49 H 1.08006 * 119.64575 * 180.02562 * 29 28 6 50 50 H 1.07993 * 119.84138 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.7162 -1.8203 1.1123 6 6 3.1715 -2.4633 2.2706 7 6 3.9760 -3.6000 2.4823 8 6 4.5765 -4.4496 1.4500 9 8 4.3962 -4.1969 0.2731 10 7 5.3283 -5.5107 1.8039 11 6 5.9290 -6.3597 0.7721 12 1 6.2160 -5.7458 -0.0817 13 6 7.1682 -7.0540 1.3405 14 6 7.7958 -7.9401 0.2627 15 6 6.7813 -8.9940 -0.1856 16 1 6.4942 -9.6081 0.6679 17 6 7.3997 -9.8672 -1.2468 18 7 8.3770 -9.3940 -1.9731 19 6 8.9578 -10.1284 -2.9251 20 6 8.5323 -11.4017 -3.1550 21 6 7.4772 -11.9126 -2.3710 22 8 7.0661 -13.0479 -2.5437 23 7 6.9359 -11.1202 -1.4212 24 6 5.5421 -8.2997 -0.7541 25 6 4.9142 -7.4135 0.3243 26 6 4.0872 -3.7668 3.8735 27 7 3.4185 -2.8122 4.4658 28 7 2.8313 -1.9825 3.5029 29 6 2.0474 -0.8734 3.6106 30 6 1.5968 -0.2366 2.5064 31 1 -0.3932 0.4417 0.7650 32 1 1.7924 -0.5138 -0.8900 33 1 1.5615 2.4678 -1.2085 34 1 1.5879 2.4585 1.2242 35 1 2.9842 -2.1982 0.1367 36 1 5.4723 -5.7120 2.7418 37 1 6.8812 -7.6678 2.1944 38 1 7.8911 -6.3031 1.6595 39 1 8.0829 -7.3259 -0.5908 40 1 8.6784 -8.4350 0.6678 41 1 9.7643 -9.7137 -3.5115 42 1 8.9926 -12.0069 -3.9220 43 1 6.2116 -11.4514 -0.8673 44 1 5.8292 -7.6855 -1.6076 45 1 4.8192 -9.0505 -1.0731 46 1 4.0313 -6.9189 -0.0807 47 1 4.6272 -8.0273 1.1781 48 1 4.6369 -4.5521 4.3710 49 1 1.7830 -0.4990 4.5886 50 1 0.9759 0.6411 2.6081 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_11618758.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:37 Heat of formation + Delta-G solvation = 35.114070 kcal Electronic energy + Delta-G solvation = -35844.466350 eV Core-core repulsion = 31032.978663 eV Total energy + Delta-G solvation = -4811.487687 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.163 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -43.28507 -42.87435 -40.80816 -39.57497 -39.26393 -38.37834 -37.29973 -35.78949 -35.05919 -34.20731 -32.54670 -32.08932 -31.73996 -30.75947 -29.58142 -27.28598 -25.88879 -25.41264 -24.85736 -23.80264 -23.62585 -23.07119 -22.31961 -21.28508 -20.70751 -19.74906 -19.20467 -18.95258 -18.60352 -17.94638 -17.79468 -17.52417 -17.05826 -16.98620 -16.93791 -16.46423 -16.04358 -15.85476 -15.74414 -15.60100 -15.46112 -15.28439 -15.06630 -14.85075 -14.64183 -14.41632 -14.21765 -14.01667 -13.90481 -13.80872 -13.48289 -13.35770 -13.21388 -13.09869 -12.47507 -12.44173 -12.28762 -12.09624 -12.05661 -11.99925 -11.88641 -11.58599 -11.53367 -11.35343 -11.24734 -11.05964 -10.88356 -10.83448 -10.31065 -9.97573 -9.64939 -8.76335 -4.89045 -0.53986 -0.43465 -0.11587 0.69749 1.05069 1.08312 1.22000 1.58057 1.60125 1.90083 2.10656 2.29881 2.52226 2.55725 2.81125 3.11472 3.25646 3.38223 3.45017 3.55774 3.60999 3.70181 3.73725 3.77368 3.88984 4.00153 4.07136 4.19619 4.20716 4.24116 4.33712 4.37434 4.41757 4.43490 4.48925 4.53192 4.57824 4.59741 4.72428 4.79985 4.89467 4.90830 5.08251 5.12068 5.14300 5.18751 5.22723 5.28303 5.32821 5.37403 5.39244 5.49178 5.53078 5.67029 5.68873 6.32309 6.46241 6.68261 6.71370 6.73182 7.40422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.542 6.542 2 C -0.084 4.084 3 Si 0.768 3.232 4 C -0.053 4.053 5 C -0.114 4.114 6 C 0.150 3.850 7 C -0.338 4.338 8 C 0.599 3.401 9 O -0.589 6.589 10 N -0.711 5.711 11 C 0.147 3.853 12 H 0.066 0.934 13 C -0.117 4.117 14 C -0.092 4.092 15 C -0.040 4.040 16 H 0.132 0.868 17 C 0.409 3.591 18 N -0.544 5.544 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.594 6.594 23 N -0.615 5.615 24 C -0.103 4.103 25 C -0.120 4.120 26 C 0.131 3.869 27 N -0.341 5.341 28 N -0.275 5.275 29 C 0.117 3.883 30 C -0.158 4.158 31 H 0.390 0.610 32 H 0.123 0.877 33 H -0.294 1.294 34 H -0.254 1.254 35 H 0.152 0.848 36 H 0.413 0.587 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.198 0.802 42 H 0.158 0.842 43 H 0.428 0.572 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.236 0.764 49 H 0.204 0.796 50 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.994 6.172 7.288 9.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.351 6.351 2 C -0.191 4.191 3 Si 0.668 3.332 4 C -0.059 4.059 5 C -0.134 4.134 6 C 0.029 3.971 7 C -0.353 4.353 8 C 0.389 3.611 9 O -0.471 6.471 10 N -0.361 5.361 11 C 0.043 3.957 12 H 0.085 0.915 13 C -0.155 4.155 14 C -0.130 4.130 15 C -0.060 4.060 16 H 0.149 0.851 17 C 0.145 3.855 18 N -0.267 5.267 19 C 0.034 3.966 20 C -0.344 4.344 21 C 0.309 3.691 22 O -0.477 6.477 23 N -0.253 5.253 24 C -0.142 4.142 25 C -0.159 4.159 26 C -0.049 4.049 27 N -0.162 5.162 28 N -0.039 5.039 29 C -0.009 4.009 30 C -0.179 4.179 31 H 0.240 0.760 32 H 0.141 0.859 33 H -0.221 1.221 34 H -0.179 1.179 35 H 0.169 0.831 36 H 0.250 0.750 37 H 0.113 0.887 38 H 0.100 0.900 39 H 0.093 0.907 40 H 0.100 0.900 41 H 0.215 0.785 42 H 0.176 0.824 43 H 0.269 0.731 44 H 0.082 0.918 45 H 0.093 0.907 46 H 0.067 0.933 47 H 0.107 0.893 48 H 0.252 0.748 49 H 0.221 0.779 50 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 1.733 7.306 6.955 10.235 hybrid contribution -1.428 -1.860 -0.328 2.368 sum 0.305 5.446 6.627 8.583 Atomic orbital electron populations 1.86680 1.17433 1.80606 1.50350 1.25284 0.83970 1.12418 0.97475 0.93452 0.90668 0.70633 0.78439 1.20546 0.94817 0.94024 0.96471 1.20656 0.99766 0.95405 0.97578 1.19577 0.95992 0.94767 0.86739 1.19761 1.17077 1.04114 0.94337 1.16981 0.77516 0.79903 0.86742 1.90764 1.62932 1.73323 1.20113 1.45623 1.51686 1.27845 1.10991 1.21001 0.93022 0.90821 0.90899 0.91542 1.21789 0.95419 0.99358 0.98952 1.21327 0.96726 0.95862 0.99130 1.20681 0.95903 0.95710 0.93683 0.85066 1.23740 0.87628 0.81655 0.92446 1.68397 1.11827 1.35816 1.10649 1.23187 0.94640 0.89077 0.89700 1.23000 1.03215 1.00375 1.07791 1.17668 0.84800 0.85403 0.81183 1.90987 1.65886 1.19942 1.70884 1.44639 1.34165 1.13744 1.32712 1.21498 0.95145 0.98953 0.98648 1.21839 0.97938 0.96982 0.99131 1.24639 0.93362 0.95698 0.91233 1.77569 1.19808 1.07232 1.11577 1.46300 1.32501 1.19611 1.05471 1.22154 0.91047 0.84323 1.03358 1.21075 1.03999 1.03201 0.89611 0.75974 0.85916 1.22135 1.17869 0.83081 0.74967 0.88665 0.90012 0.90738 0.90006 0.78492 0.82399 0.73110 0.91849 0.90671 0.93273 0.89311 0.74753 0.77929 0.79443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.37 12.88 -148.98 -1.92 -1.55 16 2 C -0.08 0.25 2.84 71.23 0.20 0.45 16 3 Si 0.77 -4.08 31.97 68.60 2.19 -1.88 16 4 C -0.05 0.11 4.53 -19.82 -0.09 0.02 16 5 C -0.11 -0.37 9.35 22.30 0.21 -0.16 16 6 C 0.15 0.75 6.76 39.49 0.27 1.01 16 7 C -0.34 -1.17 6.17 -19.90 -0.12 -1.29 16 8 C 0.60 2.57 7.75 86.41 0.67 3.24 16 9 O -0.59 -7.06 15.37 -4.42 -0.07 -7.13 16 10 N -0.71 2.95 5.07 -446.60 -2.26 0.68 16 11 C 0.15 -0.70 2.45 44.99 0.11 -0.59 16 12 H 0.07 0.08 7.58 -2.39 -0.02 0.07 16 13 C -0.12 1.24 5.39 30.59 0.16 1.40 16 14 C -0.09 0.81 4.67 30.60 0.14 0.95 16 15 C -0.04 0.36 2.48 -11.54 -0.03 0.33 16 16 H 0.13 -1.90 8.14 -2.39 -0.02 -1.92 16 17 C 0.41 -1.42 6.73 138.18 0.93 -0.49 16 18 N -0.54 0.55 9.11 -187.56 -1.71 -1.16 16 19 C 0.17 -0.21 11.20 83.96 0.94 0.73 16 20 C -0.32 -1.10 10.07 22.48 0.23 -0.87 16 21 C 0.51 3.92 7.75 84.89 0.66 4.57 16 22 O -0.59 -10.18 17.97 -5.25 -0.09 -10.27 16 23 N -0.62 0.55 5.25 -310.70 -1.63 -1.08 16 24 C -0.10 0.66 5.19 30.61 0.16 0.82 16 25 C -0.12 0.63 5.50 30.61 0.17 0.80 16 26 C 0.13 -0.16 11.44 85.42 0.98 0.82 16 27 N -0.34 -1.10 12.57 -56.62 -0.71 -1.82 16 28 N -0.27 -0.73 3.86 -187.27 -0.72 -1.45 16 29 C 0.12 -0.45 11.17 83.31 0.93 0.48 16 30 C -0.16 0.97 8.38 22.03 0.18 1.16 16 31 H 0.39 -3.41 8.08 -74.06 -0.60 -4.00 16 32 H 0.12 -0.32 7.71 -2.38 -0.02 -0.34 16 33 H -0.29 -0.80 7.11 99.48 0.71 -0.09 16 34 H -0.25 1.23 7.05 99.48 0.70 1.93 16 35 H 0.15 0.79 7.01 -2.91 -0.02 0.77 16 36 H 0.41 -4.50 7.52 -92.71 -0.70 -5.20 16 37 H 0.09 -1.40 8.14 -2.39 -0.02 -1.42 16 38 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 39 H 0.07 -0.38 7.76 -2.39 -0.02 -0.39 16 40 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.20 -1.49 8.06 -2.91 -0.02 -1.51 16 42 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 43 H 0.43 -2.37 8.78 -92.70 -0.81 -3.19 16 44 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 45 H 0.07 -0.53 8.14 -2.39 -0.02 -0.55 16 46 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 47 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 48 H 0.24 -2.67 7.46 -2.91 -0.02 -2.69 16 49 H 0.20 -2.06 8.06 -2.91 -0.02 -2.08 16 50 H 0.19 -2.45 7.26 -2.91 -0.02 -2.47 16 Total: 0.00 -36.37 416.49 -1.27 -37.64 By element: Atomic # 1 Polarization: -24.29 SS G_CDS: -1.05 Total: -25.34 kcal Atomic # 6 Polarization: 6.67 SS G_CDS: 6.70 Total: 13.37 kcal Atomic # 7 Polarization: 2.21 SS G_CDS: -7.04 Total: -4.83 kcal Atomic # 8 Polarization: -16.88 SS G_CDS: -2.08 Total: -18.96 kcal Atomic # 14 Polarization: -4.08 SS G_CDS: 2.19 Total: -1.88 kcal Total: -36.37 -1.27 -37.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_11618758.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.755 kcal (2) G-P(sol) polarization free energy of solvation -36.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds