Wall clock time and date at job start Sun Mar 7 2021 03:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35449 * 125.56608 * 2 1 4 4 C 1.50696 * 126.06726 * 359.97030 * 3 2 1 5 5 O 1.42900 * 109.47145 * 149.97743 * 4 3 2 6 6 Si 1.86298 * 109.47150 * 29.98352 * 4 3 2 7 7 C 1.39842 * 107.86386 * 179.71854 * 3 2 1 8 8 C 1.50700 * 126.45672 * 180.26124 * 7 3 2 9 9 C 1.37865 * 107.08284 * 0.41542 * 7 3 2 10 10 C 1.46676 * 126.23153 * 179.85289 * 9 7 3 11 11 O 1.21698 * 120.00309 * 359.70781 * 10 9 7 12 12 N 1.34780 * 120.00185 * 179.71699 * 10 9 7 13 13 C 1.46506 * 120.00088 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46872 * 324.99405 * 13 12 10 15 15 C 1.52997 * 109.47277 * 84.99368 * 13 12 10 16 16 C 1.52996 * 109.47165 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46972 * 300.00293 * 16 15 13 18 18 H 1.09000 * 109.46986 * 299.99742 * 17 16 15 19 19 C 1.50696 * 109.47306 * 180.02562 * 17 16 15 20 20 N 1.30644 * 119.24973 * 264.99800 * 19 17 16 21 21 C 1.33530 * 121.50456 * 179.97438 * 20 19 17 22 22 C 1.36202 * 119.90838 * 0.02562 * 21 20 19 23 23 C 1.41025 * 118.59378 * 359.97438 * 22 21 20 24 24 O 1.21978 * 120.70576 * 179.97438 * 23 22 21 25 25 N 1.34748 * 119.26036 * 84.72394 * 19 17 16 26 26 C 1.52997 * 109.47415 * 59.99860 * 17 16 15 27 27 C 1.52999 * 109.46691 * 204.99775 * 13 12 10 28 28 N 1.35533 * 125.56070 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47456 * 270.00396 * 1 2 3 30 30 H 1.09002 * 109.46741 * 30.00693 * 1 2 3 31 31 H 1.08997 * 109.47467 * 149.99700 * 1 2 3 32 32 H 1.09003 * 109.47721 * 269.98197 * 4 3 2 33 33 H 0.96704 * 114.00296 * 180.02562 * 5 4 3 34 34 H 1.48499 * 110.00293 * 59.99309 * 6 4 3 35 35 H 1.48500 * 110.00231 * 181.31940 * 6 4 3 36 36 H 1.08994 * 109.47055 * 270.20595 * 8 7 3 37 37 H 1.09009 * 109.46994 * 30.20670 * 8 7 3 38 38 H 1.08995 * 109.47175 * 150.20107 * 8 7 3 39 39 H 0.97000 * 119.99750 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.47140 * 60.00200 * 15 13 12 41 41 H 1.09001 * 109.47375 * 300.00183 * 15 13 12 42 42 H 1.08992 * 109.47534 * 180.02562 * 16 15 13 43 43 H 1.08996 * 109.47134 * 59.99508 * 16 15 13 44 44 H 1.07995 * 120.04322 * 180.02562 * 21 20 19 45 45 H 1.07998 * 120.70146 * 179.97438 * 22 21 20 46 46 H 0.97007 * 120.03495 * 0.02562 * 25 19 17 47 47 H 1.09001 * 109.46922 * 180.02562 * 26 17 16 48 48 H 1.09000 * 109.47140 * 59.99976 * 26 17 16 49 49 H 1.08993 * 109.47839 * 59.99891 * 27 13 12 50 50 H 1.09000 * 109.47160 * 299.99453 * 27 13 12 51 51 H 0.97002 * 125.67803 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1018 0.0000 4 6 1.8200 2.5320 -0.0006 5 8 2.7767 3.3518 0.6736 6 14 0.1801 2.6423 0.8764 7 6 3.6270 0.6766 0.0065 8 6 4.8486 1.5590 0.0144 9 6 3.6122 -0.7020 0.0009 10 6 4.7859 -1.5816 0.0015 11 8 5.9049 -1.1032 0.0022 12 7 4.6252 -2.9198 0.0013 13 6 5.7975 -3.7984 0.0025 14 1 6.5937 -3.3426 -0.5861 15 6 6.2796 -4.0036 1.4400 16 6 7.5043 -4.9207 1.4412 17 6 7.1295 -6.2727 0.8309 18 1 6.3335 -6.7289 1.4194 19 6 8.3356 -7.1762 0.8326 20 7 9.0818 -7.2469 -0.2374 21 6 10.1608 -8.0321 -0.2850 22 6 10.5031 -8.7824 0.7989 23 6 9.6977 -8.7063 1.9540 24 8 9.9683 -9.3619 2.9464 25 7 8.6232 -7.8887 1.9396 26 6 6.6475 -6.0675 -0.6066 27 6 5.4222 -5.1503 -0.6076 28 7 2.2952 -1.1026 0.0005 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3634 -0.8899 -0.5139 32 1 1.7062 2.8767 -1.0284 33 1 2.5355 4.2875 0.7118 34 1 0.3217 2.1750 2.2789 35 1 -0.3144 4.0424 0.8549 36 1 5.1465 1.7763 -1.0113 37 1 4.6203 2.4910 0.5317 38 1 5.6625 1.0481 0.5287 39 1 3.7333 -3.3011 0.0010 40 1 5.4834 -4.4594 2.0286 41 1 6.5469 -3.0404 1.8746 42 1 7.8474 -5.0673 2.4652 43 1 8.3002 -4.4646 0.8526 44 1 10.7613 -8.0721 -1.1818 45 1 11.3728 -9.4222 0.7743 46 1 8.0566 -7.8174 2.7238 47 1 6.3802 -7.0307 -1.0411 48 1 7.4436 -5.6113 -1.1951 49 1 5.0788 -5.0042 -1.6316 50 1 4.6260 -5.6061 -0.0190 51 1 1.9832 -2.0210 0.0006 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12297754.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:42 Heat of formation + Delta-G solvation = -34.480285 kcal Electronic energy + Delta-G solvation = -33778.380837 eV Core-core repulsion = 29258.442026 eV Total energy + Delta-G solvation = -4519.938811 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 373.183 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -42.91303 -42.60912 -40.77888 -39.49593 -38.45707 -37.80871 -35.91878 -35.22959 -33.66621 -33.32956 -32.40001 -31.81028 -30.25062 -29.26087 -27.42800 -26.43735 -25.68551 -25.18523 -23.75434 -23.02423 -22.01906 -21.16550 -20.48822 -20.07031 -19.78307 -19.29934 -19.02823 -18.40144 -17.82851 -17.30361 -17.08361 -16.69592 -16.48382 -16.01099 -15.87704 -15.64029 -15.48220 -15.21000 -15.04427 -14.92941 -14.79227 -14.45231 -14.33338 -14.13021 -14.07309 -14.00791 -13.92611 -13.64920 -13.44207 -13.23753 -13.17331 -12.97771 -12.62150 -12.53408 -12.36713 -12.32472 -12.14336 -12.04853 -11.79222 -11.62067 -11.40230 -11.34486 -11.10639 -11.01906 -10.55665 -10.17312 -9.68057 -9.44861 -8.91162 -4.76308 -0.46777 0.40060 0.66660 1.22903 1.54589 1.66905 1.73941 1.98148 2.10080 2.16909 2.31152 2.48982 2.76885 3.36559 3.40268 3.55856 3.62384 3.70174 3.86916 3.91497 3.96863 4.08745 4.14457 4.16018 4.27630 4.29121 4.34173 4.38673 4.48514 4.49170 4.50251 4.63272 4.63766 4.71010 4.81326 4.82431 4.86083 4.87317 4.92449 5.00507 5.05914 5.14251 5.15650 5.20299 5.25986 5.30528 5.34017 5.38405 5.41201 5.46049 5.54659 5.73698 5.88115 6.44984 6.61755 6.65444 6.69743 6.73752 7.16463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.082 3.918 3 C -0.201 4.201 4 C -0.053 4.053 5 O -0.557 6.557 6 Si 0.755 3.245 7 C -0.073 4.073 8 C -0.088 4.088 9 C -0.083 4.083 10 C 0.589 3.411 11 O -0.568 6.568 12 N -0.712 5.712 13 C 0.144 3.856 14 H 0.066 0.934 15 C -0.120 4.120 16 C -0.104 4.104 17 C -0.039 4.039 18 H 0.133 0.867 19 C 0.409 3.591 20 N -0.544 5.544 21 C 0.173 3.827 22 C -0.318 4.318 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.092 4.092 27 C -0.116 4.116 28 N -0.515 5.515 29 H 0.098 0.902 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.388 0.612 34 H -0.308 1.308 35 H -0.289 1.289 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.053 0.947 39 H 0.411 0.589 40 H 0.090 0.910 41 H 0.047 0.953 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.198 0.802 45 H 0.159 0.841 46 H 0.428 0.572 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.097 0.903 51 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.516 -1.546 -5.184 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.038 4.038 3 C -0.207 4.207 4 C -0.161 4.161 5 O -0.366 6.366 6 Si 0.661 3.339 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.195 4.195 10 C 0.378 3.622 11 O -0.447 6.447 12 N -0.363 5.363 13 C 0.040 3.960 14 H 0.084 0.916 15 C -0.159 4.159 16 C -0.143 4.143 17 C -0.059 4.059 18 H 0.151 0.849 19 C 0.145 3.855 20 N -0.267 5.267 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.310 3.690 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.131 4.131 27 C -0.154 4.154 28 N -0.114 5.114 29 H 0.117 0.883 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.100 0.900 33 H 0.238 0.762 34 H -0.236 1.236 35 H -0.217 1.217 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.247 0.753 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.095 0.905 43 H 0.081 0.919 44 H 0.215 0.785 45 H 0.176 0.824 46 H 0.269 0.731 47 H 0.102 0.898 48 H 0.092 0.908 49 H 0.100 0.900 50 H 0.115 0.885 51 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.595 -1.741 -4.730 12.643 hybrid contribution 1.235 0.244 1.439 1.912 sum -10.361 -1.497 -3.291 10.973 Atomic orbital electron populations 1.20696 0.84299 1.05825 1.05531 1.20579 0.95058 0.84730 1.03390 1.18763 0.92546 0.94002 1.15350 1.24355 1.02242 0.88393 1.01157 1.86519 1.47000 1.23516 1.79609 0.94583 0.78679 0.81279 0.79380 1.19953 0.95524 0.91655 1.01018 1.20337 0.94043 0.98846 1.01283 1.19958 0.84041 0.93599 1.21910 1.17160 0.86985 0.82362 0.75718 1.90823 1.25871 1.75930 1.52100 1.45763 1.10792 1.04479 1.75260 1.21071 0.87592 0.90669 0.96643 0.91581 1.21825 0.98080 0.99208 0.96790 1.21487 0.98389 0.92950 1.01463 1.20670 0.90995 0.92904 1.01336 0.84906 1.23715 0.94236 0.86737 0.80838 1.68396 1.08937 1.25177 1.24232 1.23182 0.89941 0.85382 0.98158 1.23006 1.06294 1.10658 0.94321 1.17661 0.81440 0.79904 0.90026 1.90988 1.72422 1.46954 1.37237 1.44630 1.26527 1.36775 1.17309 1.21337 0.97602 1.00809 0.93332 1.21795 0.98831 0.92244 1.02500 1.41601 1.03811 1.09198 1.56753 0.88337 0.86472 0.86053 0.90035 0.76172 1.23603 1.21717 0.92667 0.90173 0.92830 0.75293 0.89119 0.93412 0.90520 0.91947 0.78519 0.82359 0.73091 0.89771 0.90827 0.89978 0.88475 0.72277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 1.46 8.21 71.24 0.59 2.05 16 2 C 0.08 -0.33 6.84 41.34 0.28 -0.05 16 3 C -0.20 -0.71 5.42 -20.12 -0.11 -0.82 16 4 C -0.05 -0.05 3.03 71.23 0.22 0.17 16 5 O -0.56 -2.54 10.01 -148.98 -1.49 -4.03 16 6 Si 0.76 -2.10 26.76 68.60 1.84 -0.26 16 7 C -0.07 -0.65 6.15 -19.56 -0.12 -0.77 16 8 C -0.09 -1.05 9.51 71.24 0.68 -0.38 16 9 C -0.08 -0.35 7.06 40.35 0.28 -0.06 16 10 C 0.59 3.15 7.75 86.45 0.67 3.82 16 11 O -0.57 -8.18 14.47 -4.34 -0.06 -8.24 16 12 N -0.71 3.11 5.07 -446.49 -2.27 0.85 16 13 C 0.14 -0.69 2.45 44.99 0.11 -0.58 16 14 H 0.07 0.12 7.58 -2.39 -0.02 0.10 16 15 C -0.12 0.62 5.49 30.59 0.17 0.79 16 16 C -0.10 0.66 5.19 30.59 0.16 0.81 16 17 C -0.04 0.36 2.48 -11.54 -0.03 0.34 16 18 H 0.13 -2.00 8.14 -2.39 -0.02 -2.02 16 19 C 0.41 -1.49 6.73 138.18 0.93 -0.56 16 20 N -0.54 0.56 9.12 -187.55 -1.71 -1.15 16 21 C 0.17 -0.21 11.20 83.96 0.94 0.73 16 22 C -0.32 -1.07 10.07 22.48 0.23 -0.85 16 23 C 0.51 3.84 7.75 84.89 0.66 4.49 16 24 O -0.59 -10.05 17.97 -5.24 -0.09 -10.15 16 25 N -0.61 0.68 5.25 -310.69 -1.63 -0.95 16 26 C -0.09 0.84 4.67 30.61 0.14 0.98 16 27 C -0.12 1.29 5.40 30.61 0.17 1.45 16 28 N -0.51 2.64 5.99 -171.94 -1.03 1.61 16 29 H 0.10 -1.41 7.13 -2.39 -0.02 -1.42 16 30 H 0.12 -1.90 5.17 -2.39 -0.01 -1.91 16 31 H 0.12 -2.33 8.14 -2.39 -0.02 -2.35 16 32 H 0.08 -0.18 7.96 -2.39 -0.02 -0.20 16 33 H 0.39 -1.33 8.74 -74.05 -0.65 -1.98 16 34 H -0.31 -1.82 7.11 99.48 0.71 -1.11 16 35 H -0.29 -0.57 7.11 99.48 0.71 0.13 16 36 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.08 0.96 5.61 -2.38 -0.01 0.94 16 38 H 0.05 0.82 6.49 -2.39 -0.02 0.81 16 39 H 0.41 -4.89 7.73 -92.71 -0.72 -5.60 16 40 H 0.09 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.05 0.08 8.14 -2.39 -0.02 0.07 16 42 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 43 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 44 H 0.20 -1.46 8.06 -2.91 -0.02 -1.49 16 45 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 46 H 0.43 -2.50 8.78 -92.70 -0.81 -3.32 16 47 H 0.08 -0.82 8.14 -2.39 -0.02 -0.84 16 48 H 0.07 -0.37 7.76 -2.39 -0.02 -0.39 16 49 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 50 H 0.10 -1.53 8.14 -2.39 -0.02 -1.54 16 51 H 0.44 -6.05 8.19 -92.71 -0.76 -6.81 16 Total: 0.00 -38.86 402.92 -2.37 -41.23 By element: Atomic # 1 Polarization: -28.60 SS G_CDS: -1.88 Total: -30.48 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 5.96 Total: 11.58 kcal Atomic # 7 Polarization: 6.99 SS G_CDS: -6.64 Total: 0.35 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -1.65 Total: -22.42 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 1.84 Total: -0.26 kcal Total: -38.86 -2.37 -41.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12297754.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.752 kcal (2) G-P(sol) polarization free energy of solvation -38.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds