Wall clock time and date at job start Sun Mar 7 2021 03:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47263 * 2 1 4 4 C 1.50699 * 109.46852 * 239.99625 * 2 1 3 5 5 C 1.38228 * 120.00664 * 300.00457 * 4 2 1 6 6 C 1.38239 * 120.00417 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99753 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47042 * 90.00324 * 8 7 6 10 10 O 1.21282 * 119.99871 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00217 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00354 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99874 * 12 11 9 14 14 C 1.53002 * 109.47313 * 84.99862 * 12 11 9 15 15 C 1.53001 * 109.46963 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46886 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 18 18 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 19 19 N 1.30643 * 119.25206 * 265.00165 * 18 16 15 20 20 C 1.33522 * 121.50177 * 179.97438 * 19 18 16 21 21 C 1.36192 * 119.91237 * 359.97438 * 20 19 18 22 22 C 1.41028 * 118.59569 * 359.97438 * 21 20 19 23 23 O 1.21978 * 120.71019 * 179.97438 * 22 21 20 24 24 N 1.34745 * 119.25401 * 84.73016 * 18 16 15 25 25 C 1.53002 * 109.47233 * 60.00670 * 16 15 14 26 26 C 1.52997 * 109.47194 * 204.99986 * 12 11 9 27 27 C 1.38238 * 120.00038 * 0.25704 * 7 6 5 28 28 C 1.38235 * 119.99904 * 359.46917 * 27 7 6 29 29 H 0.96705 * 114.00018 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.46936 * 120.00372 * 2 1 3 31 31 H 1.48503 * 109.99897 * 60.00026 * 3 2 1 32 32 H 1.48500 * 109.99811 * 181.31989 * 3 2 1 33 33 H 1.08002 * 120.00025 * 359.97438 * 5 4 2 34 34 H 1.07998 * 119.99763 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47361 * 330.00169 * 8 7 6 36 36 H 1.08999 * 109.47190 * 210.00204 * 8 7 6 37 37 H 0.97007 * 119.99952 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.46497 * 300.00287 * 14 12 11 39 39 H 1.09002 * 109.47067 * 60.00040 * 14 12 11 40 40 H 1.09001 * 109.46652 * 179.97438 * 15 14 12 41 41 H 1.08992 * 109.47514 * 59.99933 * 15 14 12 42 42 H 1.08001 * 120.04137 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.70745 * 179.97438 * 21 20 19 44 44 H 0.97003 * 120.04132 * 0.02562 * 24 18 16 45 45 H 1.09002 * 109.47075 * 59.99068 * 25 16 15 46 46 H 1.08996 * 109.47407 * 180.02562 * 25 16 15 47 47 H 1.09001 * 109.47375 * 59.99949 * 26 12 11 48 48 H 1.09002 * 109.47497 * 299.99590 * 26 12 11 49 49 H 1.07993 * 119.99722 * 179.71908 * 27 7 6 50 50 H 1.07996 * 120.00007 * 180.27373 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5973 -2.0339 -1.4493 6 6 2.0585 -2.6857 -2.5777 7 6 2.8533 -2.0139 -3.4876 8 6 3.3566 -2.7247 -4.7175 9 6 2.3643 -2.5523 -5.8386 10 8 1.3484 -1.9155 -5.6566 11 7 2.6055 -3.1067 -7.0431 12 6 1.6412 -2.9388 -8.1331 13 1 0.6301 -2.9325 -7.7260 14 6 1.9097 -1.6152 -8.8521 15 6 0.9022 -1.4395 -9.9901 16 6 1.0454 -2.5964 -10.9811 17 1 2.0564 -2.6028 -11.3885 18 6 0.0535 -2.4230 -12.1023 19 7 -1.1010 -3.0306 -12.0330 20 6 -2.0131 -2.9081 -13.0003 21 6 -1.7480 -2.1350 -14.0898 22 6 -0.5022 -1.4782 -14.1643 23 8 -0.2243 -0.7767 -15.1227 24 7 0.3752 -1.6405 -13.1510 25 6 0.7769 -3.9200 -10.2622 26 6 1.7849 -4.0957 -9.1239 27 6 3.1913 -0.6918 -3.2664 28 6 2.7254 -0.0384 -2.1408 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5139 0.8899 31 1 1.5615 2.4678 1.2085 32 1 3.5346 1.7701 -0.0321 33 1 0.9767 -2.5589 -0.7382 34 1 1.7979 -3.7198 -2.7484 35 1 3.4781 -3.7858 -4.4997 36 1 4.3167 -2.3023 -5.0139 37 1 3.4179 -3.6164 -7.1885 38 1 1.8073 -0.7910 -8.1461 39 1 2.9208 -1.6214 -9.2592 40 1 1.0932 -0.4963 -10.5020 41 1 -0.1087 -1.4331 -9.5827 42 1 -2.9599 -3.4213 -12.9189 43 1 -2.4763 -2.0272 -14.8799 44 1 1.2371 -1.1963 -13.1791 45 1 -0.2340 -3.9136 -9.8546 46 1 0.8794 -4.7442 -10.9680 47 1 1.5936 -5.0386 -8.6117 48 1 2.7960 -4.1020 -9.5311 49 1 3.8159 -0.1684 -3.9749 50 1 2.9858 0.9957 -1.9702 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:56 Heat of formation + Delta-G solvation = -46.344883 kcal Electronic energy + Delta-G solvation = -32322.960693 eV Core-core repulsion = 27895.244783 eV Total energy + Delta-G solvation = -4427.715909 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.87530 -41.34510 -40.45446 -39.50552 -38.41253 -37.57029 -35.87398 -35.12341 -34.07403 -32.54696 -32.05221 -31.91943 -30.61403 -29.31733 -26.19758 -25.59462 -25.13422 -23.95958 -23.79338 -22.98660 -22.00042 -21.46889 -20.90821 -19.76650 -19.12509 -18.43849 -18.11918 -17.82289 -17.58351 -17.01678 -16.96981 -16.56812 -16.29087 -16.07392 -15.95220 -15.68121 -15.59705 -15.45053 -15.29145 -14.86809 -14.69289 -14.53550 -14.42011 -14.18929 -14.06347 -13.95776 -13.62433 -13.42934 -13.27830 -13.12237 -12.82985 -12.64773 -12.49688 -12.37012 -12.20620 -12.06665 -11.92125 -11.80576 -11.65820 -11.50780 -11.21610 -11.12793 -10.88046 -10.39903 -10.13444 -9.84407 -9.58577 -9.57569 -5.00329 -0.48187 0.26118 0.48725 0.77492 1.32750 1.54645 1.62518 1.64444 1.98410 2.04758 2.53687 2.65523 2.79870 3.23502 3.39405 3.47935 3.49348 3.57676 3.59259 3.73841 3.76176 3.85634 3.88370 3.95885 3.99698 4.03400 4.10363 4.15586 4.22130 4.22708 4.25594 4.35347 4.42097 4.47707 4.50105 4.54284 4.57097 4.70246 4.77940 4.81836 4.84983 4.90976 4.97154 5.01269 5.07598 5.08920 5.20137 5.37940 5.39716 5.41919 5.43373 5.56915 5.59763 6.01943 6.41470 6.61495 6.68411 6.78614 7.20010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.541 6.541 2 C -0.068 4.068 3 Si 0.688 3.312 4 C -0.119 4.119 5 C -0.091 4.091 6 C -0.104 4.104 7 C -0.063 4.063 8 C -0.104 4.104 9 C 0.515 3.485 10 O -0.524 6.524 11 N -0.731 5.731 12 C 0.143 3.857 13 H 0.093 0.907 14 C -0.126 4.126 15 C -0.109 4.109 16 C -0.046 4.046 17 H 0.101 0.899 18 C 0.403 3.597 19 N -0.533 5.533 20 C 0.156 3.844 21 C -0.293 4.293 22 C 0.520 3.480 23 O -0.537 6.537 24 N -0.627 5.627 25 C -0.096 4.096 26 C -0.128 4.128 27 C -0.100 4.100 28 C -0.116 4.116 29 H 0.380 0.620 30 H 0.113 0.887 31 H -0.255 1.255 32 H -0.258 1.258 33 H 0.126 0.874 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.104 0.896 37 H 0.401 0.599 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.171 0.829 43 H 0.157 0.843 44 H 0.417 0.583 45 H 0.089 0.911 46 H 0.075 0.925 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.124 0.876 50 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -3.476 0.195 5.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.346 6.346 2 C -0.179 4.179 3 Si 0.590 3.410 4 C -0.119 4.119 5 C -0.109 4.109 6 C -0.122 4.122 7 C -0.064 4.064 8 C -0.144 4.144 9 C 0.301 3.699 10 O -0.399 6.399 11 N -0.383 5.383 12 C 0.039 3.961 13 H 0.111 0.889 14 C -0.165 4.165 15 C -0.148 4.148 16 C -0.066 4.066 17 H 0.119 0.881 18 C 0.138 3.862 19 N -0.256 5.256 20 C 0.018 3.982 21 C -0.317 4.317 22 C 0.318 3.682 23 O -0.415 6.415 24 N -0.266 5.266 25 C -0.134 4.134 26 C -0.166 4.166 27 C -0.118 4.118 28 C -0.133 4.133 29 H 0.227 0.773 30 H 0.130 0.870 31 H -0.180 1.180 32 H -0.183 1.183 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.235 0.765 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.188 0.812 43 H 0.175 0.825 44 H 0.256 0.744 45 H 0.108 0.892 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.089 0.911 49 H 0.142 0.858 50 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.838 -2.839 1.224 4.928 hybrid contribution 0.980 -0.238 -0.834 1.309 sum 4.818 -3.077 0.390 5.730 Atomic orbital electron populations 1.86492 1.17075 1.81745 1.49300 1.25045 0.85298 1.10048 0.97523 0.94627 0.80882 0.78362 0.87109 1.20327 0.99238 0.95324 0.97028 1.20955 0.98695 0.93843 0.97376 1.21015 0.97034 0.99992 0.94116 1.19261 0.98172 0.94246 0.94714 1.20701 0.98908 1.02932 0.91879 1.20560 0.87365 0.78858 0.83100 1.90762 1.27506 1.39385 1.82262 1.46091 1.24915 1.55966 1.11332 1.21022 0.94262 0.94401 0.86441 0.88942 1.21899 0.99092 0.98343 0.97156 1.21563 1.01509 0.96305 0.95406 1.20556 0.95670 0.98913 0.91487 0.88125 1.23205 0.92778 0.83618 0.86623 1.68298 1.01195 1.26226 1.29884 1.22762 0.97198 0.91002 0.87238 1.22977 0.98765 1.06017 1.03990 1.17361 0.85564 0.83142 0.82123 1.91029 1.78307 1.40641 1.31509 1.44770 1.20818 1.41730 1.19237 1.21377 1.00864 0.94514 0.96659 1.21862 1.00263 0.98339 0.96134 1.20895 0.99929 0.93838 0.97139 1.20942 0.98453 0.99203 0.94711 0.77275 0.86990 1.18020 1.18340 0.85633 0.86013 0.87760 0.87754 0.76537 0.90532 0.91311 0.91100 0.90152 0.81226 0.82515 0.74385 0.89207 0.90620 0.90397 0.91115 0.85848 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.66 12.77 -35.23 -0.45 -1.11 16 2 C -0.07 -0.04 2.82 36.01 0.10 0.06 16 3 Si 0.69 -0.27 29.79 -169.99 -5.06 -5.33 16 4 C -0.12 -0.12 5.39 -104.62 -0.56 -0.69 16 5 C -0.09 -0.13 9.61 -39.58 -0.38 -0.51 16 6 C -0.10 -0.08 9.70 -39.58 -0.38 -0.46 16 7 C -0.06 -0.01 4.37 -104.62 -0.46 -0.46 16 8 C -0.10 0.29 5.83 -29.03 -0.17 0.12 16 9 C 0.52 -0.39 7.79 -10.99 -0.09 -0.48 16 10 O -0.52 -1.93 15.70 5.56 0.09 -1.85 16 11 N -0.73 2.59 5.08 -53.81 -0.27 2.32 16 12 C 0.14 -0.45 2.45 -67.93 -0.17 -0.62 16 13 H 0.09 -0.06 7.58 -51.93 -0.39 -0.45 16 14 C -0.13 0.43 5.49 -26.73 -0.15 0.28 16 15 C -0.11 0.40 5.19 -26.73 -0.14 0.26 16 16 C -0.05 0.20 2.48 -91.77 -0.23 -0.03 16 17 H 0.10 -0.62 8.14 -51.93 -0.42 -1.04 16 18 C 0.40 -0.70 6.73 -155.57 -1.05 -1.75 16 19 N -0.53 0.26 9.12 -10.63 -0.10 0.16 16 20 C 0.16 -0.10 11.20 -17.55 -0.20 -0.30 16 21 C -0.29 -0.30 10.07 -39.26 -0.40 -0.69 16 22 C 0.52 1.51 7.75 -15.09 -0.12 1.39 16 23 O -0.54 -3.82 17.97 4.94 0.09 -3.74 16 24 N -0.63 0.51 5.25 -12.27 -0.06 0.45 16 25 C -0.10 0.39 4.67 -26.70 -0.12 0.26 16 26 C -0.13 0.63 5.39 -26.71 -0.14 0.48 16 27 C -0.10 -0.02 9.70 -39.58 -0.38 -0.40 16 28 C -0.12 -0.05 8.67 -39.58 -0.34 -0.39 16 29 H 0.38 -0.87 8.70 45.56 0.40 -0.47 16 30 H 0.11 0.09 7.96 -51.93 -0.41 -0.32 16 31 H -0.26 -0.71 7.11 56.52 0.40 -0.31 16 32 H -0.26 -0.43 7.11 56.52 0.40 -0.03 16 33 H 0.13 0.12 8.06 -52.49 -0.42 -0.31 16 34 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 35 H 0.10 -0.48 8.09 -51.93 -0.42 -0.90 16 36 H 0.10 -0.50 8.08 -51.93 -0.42 -0.92 16 37 H 0.40 -2.50 8.60 -40.82 -0.35 -2.85 16 38 H 0.08 -0.09 8.14 -51.93 -0.42 -0.51 16 39 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 40 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.08 -0.18 8.14 -51.93 -0.42 -0.60 16 42 H 0.17 -0.57 8.06 -52.49 -0.42 -0.99 16 43 H 0.16 0.02 8.06 -52.49 -0.42 -0.40 16 44 H 0.42 -1.27 8.78 -40.82 -0.36 -1.63 16 45 H 0.09 -0.24 7.76 -51.93 -0.40 -0.64 16 46 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 47 H 0.08 -0.36 8.14 -51.93 -0.42 -0.79 16 48 H 0.07 -0.42 8.14 -51.93 -0.42 -0.85 16 49 H 0.12 -0.20 8.06 -52.49 -0.42 -0.62 16 50 H 0.13 -0.17 4.88 -52.49 -0.26 -0.42 16 LS Contribution 411.06 15.07 6.19 6.19 Total: 0.00 -12.27 411.06 -12.26 -24.53 By element: Atomic # 1 Polarization: -10.39 SS G_CDS: -7.31 Total: -17.71 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: -5.37 Total: -3.92 kcal Atomic # 7 Polarization: 3.36 SS G_CDS: -0.43 Total: 2.92 kcal Atomic # 8 Polarization: -6.42 SS G_CDS: -0.27 Total: -6.69 kcal Atomic # 14 Polarization: -0.27 SS G_CDS: -5.06 Total: -5.33 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -12.27 -12.26 -24.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -12.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds