Wall clock time and date at job start Sun Mar 7 2021 03:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86296 * 109.47263 * 2 1 4 4 C 1.50699 * 109.46852 * 239.99625 * 2 1 3 5 5 C 1.38228 * 120.00664 * 300.00457 * 4 2 1 6 6 C 1.38239 * 120.00417 * 180.02562 * 5 4 2 7 7 C 1.38237 * 119.99707 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99753 * 179.97438 * 7 6 5 9 9 C 1.50703 * 109.47042 * 90.00324 * 8 7 6 10 10 O 1.21282 * 119.99871 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00217 * 180.02562 * 9 8 7 12 12 C 1.46496 * 120.00354 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.47021 * 324.99874 * 12 11 9 14 14 C 1.53002 * 109.47313 * 84.99862 * 12 11 9 15 15 C 1.53001 * 109.46963 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46886 * 299.99499 * 15 14 12 17 17 H 1.09002 * 109.47398 * 300.00496 * 16 15 14 18 18 C 1.50703 * 109.46912 * 180.02562 * 16 15 14 19 19 N 1.30643 * 119.25206 * 265.00165 * 18 16 15 20 20 C 1.33522 * 121.50177 * 179.97438 * 19 18 16 21 21 C 1.36192 * 119.91237 * 359.97438 * 20 19 18 22 22 C 1.41028 * 118.59569 * 359.97438 * 21 20 19 23 23 O 1.21978 * 120.71019 * 179.97438 * 22 21 20 24 24 N 1.34745 * 119.25401 * 84.73016 * 18 16 15 25 25 C 1.53002 * 109.47233 * 60.00670 * 16 15 14 26 26 C 1.52997 * 109.47194 * 204.99986 * 12 11 9 27 27 C 1.38238 * 120.00038 * 0.25704 * 7 6 5 28 28 C 1.38235 * 119.99904 * 359.46917 * 27 7 6 29 29 H 0.96705 * 114.00018 * 60.00004 * 1 2 3 30 30 H 1.08997 * 109.46936 * 120.00372 * 2 1 3 31 31 H 1.48503 * 109.99897 * 60.00026 * 3 2 1 32 32 H 1.48500 * 109.99811 * 181.31989 * 3 2 1 33 33 H 1.08002 * 120.00025 * 359.97438 * 5 4 2 34 34 H 1.07998 * 119.99763 * 179.97438 * 6 5 4 35 35 H 1.09005 * 109.47361 * 330.00169 * 8 7 6 36 36 H 1.08999 * 109.47190 * 210.00204 * 8 7 6 37 37 H 0.97007 * 119.99952 * 359.97438 * 11 9 8 38 38 H 1.09000 * 109.46497 * 300.00287 * 14 12 11 39 39 H 1.09002 * 109.47067 * 60.00040 * 14 12 11 40 40 H 1.09001 * 109.46652 * 179.97438 * 15 14 12 41 41 H 1.08992 * 109.47514 * 59.99933 * 15 14 12 42 42 H 1.08001 * 120.04137 * 179.97438 * 20 19 18 43 43 H 1.08001 * 120.70745 * 179.97438 * 21 20 19 44 44 H 0.97003 * 120.04132 * 0.02562 * 24 18 16 45 45 H 1.09002 * 109.47075 * 59.99068 * 25 16 15 46 46 H 1.08996 * 109.47407 * 180.02562 * 25 16 15 47 47 H 1.09001 * 109.47375 * 59.99949 * 26 12 11 48 48 H 1.09002 * 109.47497 * 299.99590 * 26 12 11 49 49 H 1.07993 * 119.99722 * 179.71908 * 27 7 6 50 50 H 1.07996 * 120.00007 * 180.27373 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 6 1.9313 -0.7105 -1.2304 5 6 1.5973 -2.0339 -1.4493 6 6 2.0585 -2.6857 -2.5777 7 6 2.8533 -2.0139 -3.4876 8 6 3.3566 -2.7247 -4.7175 9 6 2.3643 -2.5523 -5.8386 10 8 1.3484 -1.9155 -5.6566 11 7 2.6055 -3.1067 -7.0431 12 6 1.6412 -2.9388 -8.1331 13 1 0.6301 -2.9325 -7.7260 14 6 1.9097 -1.6152 -8.8521 15 6 0.9022 -1.4395 -9.9901 16 6 1.0454 -2.5964 -10.9811 17 1 2.0564 -2.6028 -11.3885 18 6 0.0535 -2.4230 -12.1023 19 7 -1.1010 -3.0306 -12.0330 20 6 -2.0131 -2.9081 -13.0003 21 6 -1.7480 -2.1350 -14.0898 22 6 -0.5022 -1.4782 -14.1643 23 8 -0.2243 -0.7767 -15.1227 24 7 0.3752 -1.6405 -13.1510 25 6 0.7769 -3.9200 -10.2622 26 6 1.7849 -4.0957 -9.1239 27 6 3.1913 -0.6918 -3.2664 28 6 2.7254 -0.0384 -2.1408 29 1 -0.3933 0.4417 -0.7651 30 1 1.7923 -0.5139 0.8899 31 1 1.5615 2.4678 1.2085 32 1 3.5346 1.7701 -0.0321 33 1 0.9767 -2.5589 -0.7382 34 1 1.7979 -3.7198 -2.7484 35 1 3.4781 -3.7858 -4.4997 36 1 4.3167 -2.3023 -5.0139 37 1 3.4179 -3.6164 -7.1885 38 1 1.8073 -0.7910 -8.1461 39 1 2.9208 -1.6214 -9.2592 40 1 1.0932 -0.4963 -10.5020 41 1 -0.1087 -1.4331 -9.5827 42 1 -2.9599 -3.4213 -12.9189 43 1 -2.4763 -2.0272 -14.8799 44 1 1.2371 -1.1963 -13.1791 45 1 -0.2340 -3.9136 -9.8546 46 1 0.8794 -4.7442 -10.9680 47 1 1.5936 -5.0386 -8.6117 48 1 2.7960 -4.1020 -9.5311 49 1 3.8159 -0.1684 -3.9749 50 1 2.9858 0.9957 -1.9702 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12335836.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:55 Heat of formation + Delta-G solvation = -49.083467 kcal Electronic energy + Delta-G solvation = -32323.079447 eV Core-core repulsion = 27895.244783 eV Total energy + Delta-G solvation = -4427.834663 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.173 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -42.88848 -41.24397 -40.38049 -39.49006 -38.46260 -37.60754 -35.80883 -35.07377 -34.02072 -32.50439 -31.91243 -31.76065 -30.52767 -29.19935 -26.14734 -25.59186 -25.09399 -23.79224 -23.68512 -22.87072 -21.93583 -21.30526 -20.70216 -19.76148 -19.15266 -18.45222 -17.97302 -17.76773 -17.48662 -17.05798 -16.93926 -16.49632 -16.29088 -16.01176 -15.91430 -15.64035 -15.59525 -15.30378 -15.10199 -14.78112 -14.69294 -14.50693 -14.39421 -14.08744 -14.02462 -13.96649 -13.42174 -13.26930 -13.16651 -12.98713 -12.74167 -12.44877 -12.30616 -12.24920 -12.08685 -12.01832 -11.95732 -11.68506 -11.56679 -11.36990 -11.27081 -11.07849 -10.84503 -10.44472 -9.95849 -9.85503 -9.66235 -9.57407 -5.01131 -0.44789 0.26716 0.47550 0.68565 1.30498 1.56848 1.60133 1.74490 1.92366 2.24396 2.50953 2.77565 2.84889 3.43058 3.50376 3.59124 3.65824 3.68359 3.74778 3.82742 3.93959 4.01613 4.07145 4.10583 4.18757 4.24250 4.31677 4.39258 4.40653 4.44281 4.47951 4.50263 4.51675 4.55959 4.66406 4.71712 4.74910 4.87147 4.89456 5.03321 5.07488 5.11053 5.11955 5.20805 5.26577 5.35876 5.36124 5.40365 5.47783 5.50764 5.55757 5.61834 5.65595 6.04379 6.67359 6.67753 6.71592 6.71794 7.39236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.077 4.077 3 Si 0.774 3.226 4 C -0.129 4.129 5 C -0.109 4.109 6 C -0.116 4.116 7 C -0.070 4.070 8 C -0.100 4.100 9 C 0.513 3.487 10 O -0.577 6.577 11 N -0.716 5.716 12 C 0.143 3.857 13 H 0.061 0.939 14 C -0.119 4.119 15 C -0.104 4.104 16 C -0.039 4.039 17 H 0.132 0.868 18 C 0.409 3.591 19 N -0.545 5.545 20 C 0.173 3.827 21 C -0.319 4.319 22 C 0.509 3.491 23 O -0.593 6.593 24 N -0.615 5.615 25 C -0.093 4.093 26 C -0.117 4.117 27 C -0.110 4.110 28 C -0.124 4.124 29 H 0.393 0.607 30 H 0.105 0.895 31 H -0.299 1.299 32 H -0.281 1.281 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.418 0.582 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.197 0.803 43 H 0.158 0.842 44 H 0.429 0.571 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.095 0.905 49 H 0.142 0.858 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.239 -4.598 -0.308 7.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.186 4.186 3 Si 0.680 3.320 4 C -0.129 4.129 5 C -0.127 4.127 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.139 4.139 9 C 0.301 3.699 10 O -0.456 6.456 11 N -0.368 5.368 12 C 0.038 3.962 13 H 0.079 0.921 14 C -0.157 4.157 15 C -0.144 4.144 16 C -0.059 4.059 17 H 0.150 0.850 18 C 0.145 3.855 19 N -0.268 5.268 20 C 0.033 3.967 21 C -0.343 4.343 22 C 0.310 3.690 23 O -0.476 6.476 24 N -0.252 5.252 25 C -0.132 4.132 26 C -0.155 4.155 27 C -0.128 4.128 28 C -0.142 4.142 29 H 0.243 0.757 30 H 0.122 0.878 31 H -0.227 1.227 32 H -0.208 1.208 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.150 0.850 37 H 0.255 0.745 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.214 0.786 43 H 0.176 0.824 44 H 0.269 0.731 45 H 0.090 0.910 46 H 0.098 0.902 47 H 0.097 0.903 48 H 0.114 0.886 49 H 0.160 0.840 50 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.756 -4.014 0.718 7.054 hybrid contribution 0.371 0.042 -0.568 0.680 sum 6.127 -3.972 0.150 7.303 Atomic orbital electron populations 1.86447 1.17533 1.82221 1.50381 1.25217 0.85112 1.11054 0.97263 0.93607 0.78010 0.75689 0.84738 1.20394 0.99780 0.95379 0.97394 1.21070 0.99336 0.94344 0.97940 1.21237 0.97334 1.00660 0.94209 1.19607 0.97548 0.94477 0.95446 1.20768 0.99129 1.04198 0.89811 1.20918 0.86890 0.78087 0.84038 1.90749 1.29737 1.41908 1.83180 1.45967 1.25284 1.55096 1.10434 1.20975 0.92898 0.95510 0.86776 0.92084 1.21813 1.00201 0.97185 0.96525 1.21497 1.00470 0.96902 0.95490 1.20680 0.96415 0.98487 0.90339 0.84991 1.23754 0.92890 0.82367 0.86517 1.68395 1.01724 1.26765 1.29958 1.23172 0.97904 0.89547 0.86055 1.23002 0.98591 1.07510 1.05234 1.17655 0.86497 0.82799 0.82070 1.90988 1.79532 1.43318 1.33754 1.44626 1.20818 1.41258 1.18523 1.21337 1.00311 0.94575 0.96955 1.21788 1.01243 0.97322 0.95150 1.21232 1.00046 0.94149 0.97331 1.21168 0.98284 0.99964 0.94768 0.75689 0.87766 1.22719 1.20791 0.86134 0.85102 0.85540 0.85020 0.74503 0.92967 0.89089 0.90520 0.92129 0.78579 0.82398 0.73061 0.90976 0.90164 0.90256 0.88648 0.83974 0.84274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.01 12.77 -148.98 -1.90 -3.91 16 2 C -0.08 -0.17 2.82 71.24 0.20 0.03 16 3 Si 0.77 -0.15 29.79 68.60 2.04 1.90 16 4 C -0.13 -0.39 5.39 -19.87 -0.11 -0.49 16 5 C -0.11 -0.45 9.61 22.27 0.21 -0.23 16 6 C -0.12 -0.24 9.70 22.27 0.22 -0.03 16 7 C -0.07 0.01 4.37 -19.87 -0.09 -0.07 16 8 C -0.10 0.72 5.83 29.10 0.17 0.89 16 9 C 0.51 -1.12 7.79 87.66 0.68 -0.44 16 10 O -0.58 -4.76 15.70 -3.03 -0.05 -4.81 16 11 N -0.72 6.17 5.08 -442.54 -2.25 3.92 16 12 C 0.14 -1.02 2.45 44.99 0.11 -0.91 16 13 H 0.06 -0.01 7.58 -2.39 -0.02 -0.03 16 14 C -0.12 0.92 5.49 30.60 0.17 1.09 16 15 C -0.10 0.82 5.19 30.59 0.16 0.98 16 16 C -0.04 0.40 2.48 -11.54 -0.03 0.37 16 17 H 0.13 -2.07 8.14 -2.39 -0.02 -2.09 16 18 C 0.41 -1.73 6.73 138.18 0.93 -0.80 16 19 N -0.55 0.80 9.12 -187.56 -1.71 -0.91 16 20 C 0.17 -0.28 11.20 83.96 0.94 0.66 16 21 C -0.32 -0.93 10.07 22.48 0.23 -0.71 16 22 C 0.51 3.56 7.75 84.89 0.66 4.22 16 23 O -0.59 -9.71 17.97 -5.24 -0.09 -9.81 16 24 N -0.61 1.07 5.25 -310.68 -1.63 -0.56 16 25 C -0.09 0.89 4.67 30.61 0.14 1.03 16 26 C -0.12 1.40 5.39 30.61 0.17 1.56 16 27 C -0.11 0.01 9.70 22.27 0.22 0.22 16 28 C -0.12 -0.12 8.67 22.27 0.19 0.08 16 29 H 0.39 -1.42 8.70 -74.05 -0.64 -2.07 16 30 H 0.10 0.33 7.96 -2.39 -0.02 0.31 16 31 H -0.30 -2.11 7.11 99.48 0.71 -1.40 16 32 H -0.28 -0.99 7.11 99.48 0.71 -0.28 16 33 H 0.12 0.47 8.06 -2.91 -0.02 0.45 16 34 H 0.13 -0.12 8.06 -2.91 -0.02 -0.15 16 35 H 0.13 -1.47 8.09 -2.38 -0.02 -1.49 16 36 H 0.13 -1.66 8.08 -2.39 -0.02 -1.68 16 37 H 0.42 -6.42 8.60 -92.70 -0.80 -7.22 16 38 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.09 -1.08 8.14 -2.39 -0.02 -1.10 16 40 H 0.08 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H 0.06 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.20 -1.53 8.06 -2.91 -0.02 -1.55 16 43 H 0.16 0.28 8.06 -2.91 -0.02 0.26 16 44 H 0.43 -2.82 8.78 -92.71 -0.81 -3.64 16 45 H 0.07 -0.39 7.76 -2.39 -0.02 -0.41 16 46 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 47 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 48 H 0.10 -1.53 8.14 -2.39 -0.02 -1.55 16 49 H 0.14 -0.65 8.06 -2.91 -0.02 -0.68 16 50 H 0.14 -0.41 4.88 -2.91 -0.01 -0.43 16 Total: 0.00 -32.59 411.06 -1.64 -34.23 By element: Atomic # 1 Polarization: -26.26 SS G_CDS: -1.22 Total: -27.48 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 5.17 Total: 7.44 kcal Atomic # 7 Polarization: 8.03 SS G_CDS: -5.59 Total: 2.45 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: -2.04 Total: -18.53 kcal Atomic # 14 Polarization: -0.15 SS G_CDS: 2.04 Total: 1.90 kcal Total: -32.59 -1.64 -34.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12335836.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.852 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds