Wall clock time and date at job start Sun Mar 7 2021 03:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86299 * 109.46886 * 2 1 4 4 C 1.50704 * 109.46944 * 240.00357 * 2 1 3 5 5 C 1.34460 * 126.48090 * 104.97539 * 4 2 1 6 6 N 1.36565 * 109.97920 * 179.97438 * 5 4 2 7 7 C 1.37825 * 109.86343 * 359.97438 * 6 5 4 8 8 C 1.38647 * 133.37918 * 180.02562 * 7 6 5 9 9 C 1.39322 * 119.66627 * 179.97438 * 8 7 6 10 10 C 1.47577 * 119.83189 * 179.97438 * 9 8 7 11 11 O 1.21592 * 120.00194 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99796 * 180.02562 * 10 9 8 13 13 C 1.46504 * 119.99541 * 180.02562 * 12 10 9 14 14 H 1.08996 * 109.47440 * 35.00056 * 13 12 10 15 15 C 1.52999 * 109.46949 * 155.00129 * 13 12 10 16 16 C 1.52996 * 109.47437 * 179.97438 * 15 13 12 17 17 C 1.53008 * 109.47186 * 300.00158 * 16 15 13 18 18 H 1.08996 * 109.46957 * 299.99766 * 17 16 15 19 19 C 1.50701 * 109.47120 * 179.97438 * 17 16 15 20 20 N 1.30634 * 119.25482 * 335.02087 * 19 17 16 21 21 C 1.33526 * 121.50817 * 179.97438 * 20 19 17 22 22 C 1.36195 * 119.90299 * 0.02562 * 21 20 19 23 23 C 1.41025 * 118.59791 * 359.97438 * 22 21 20 24 24 O 1.21982 * 120.70775 * 180.02562 * 23 22 21 25 25 N 1.34746 * 119.25380 * 154.99993 * 19 17 16 26 26 C 1.52999 * 109.47062 * 59.99612 * 17 16 15 27 27 C 1.52998 * 109.47007 * 274.99729 * 13 12 10 28 28 C 1.40202 * 120.33608 * 0.26915 * 9 8 7 29 29 C 1.36234 * 120.37388 * 359.48667 * 28 9 8 30 30 C 1.39874 * 119.96029 * 0.48865 * 29 28 9 31 31 H 0.96694 * 114.00597 * 60.00462 * 1 2 3 32 32 H 1.09002 * 109.47816 * 119.99944 * 2 1 3 33 33 H 1.48498 * 110.00348 * 60.00143 * 3 2 1 34 34 H 1.48504 * 110.00271 * 181.32273 * 3 2 1 35 35 H 1.07996 * 125.01042 * 359.97438 * 5 4 2 36 36 H 0.97003 * 125.06220 * 179.97438 * 6 5 4 37 37 H 1.08000 * 120.16597 * 0.02562 * 8 7 6 38 38 H 0.96998 * 120.00135 * 0.02562 * 12 10 9 39 39 H 1.09010 * 109.47243 * 59.99623 * 15 13 12 40 40 H 1.08999 * 109.47341 * 300.00280 * 15 13 12 41 41 H 1.08995 * 109.47496 * 180.02562 * 16 15 13 42 42 H 1.08996 * 109.46982 * 59.99909 * 16 15 13 43 43 H 1.07999 * 120.04371 * 180.02562 * 21 20 19 44 44 H 1.08003 * 120.69776 * 180.27226 * 22 21 20 45 45 H 0.97006 * 120.03713 * 359.97438 * 25 19 17 46 46 H 1.09005 * 109.46954 * 59.99669 * 26 17 16 47 47 H 1.08999 * 109.47341 * 179.97438 * 26 17 16 48 48 H 1.08997 * 109.47660 * 300.00030 * 27 13 12 49 49 H 1.09001 * 109.47154 * 60.00952 * 27 13 12 50 50 H 1.08000 * 119.80929 * 179.74359 * 28 9 8 51 51 H 1.08005 * 120.01508 * 180.25706 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2306 5 6 2.4611 -0.1361 -2.3248 6 7 2.8036 -1.0946 -3.2354 7 6 2.4962 -2.3431 -2.7391 8 6 2.6341 -3.6280 -3.2415 9 6 2.2179 -4.7157 -2.4769 10 6 2.3625 -6.0849 -3.0083 11 8 2.8442 -6.2615 -4.1106 12 7 1.9606 -7.1395 -2.2717 13 6 2.1046 -8.4987 -2.7990 14 1 3.0148 -8.5626 -3.3953 15 6 2.1855 -9.4907 -1.6370 16 6 2.3353 -10.9103 -2.1876 17 6 1.1268 -11.2479 -3.0632 18 1 0.2168 -11.1837 -2.4667 19 6 1.2746 -12.6459 -3.6060 20 7 2.4690 -13.1613 -3.7257 21 6 2.6521 -14.3957 -4.2007 22 6 1.5782 -15.1459 -4.5735 23 6 0.2887 -14.5897 -4.4444 24 8 -0.6999 -15.2277 -4.7662 25 7 0.1718 -13.3362 -3.9567 26 6 1.0459 -10.2559 -4.2252 27 6 0.8964 -8.8367 -3.6748 28 6 1.6568 -4.5158 -1.2077 29 6 1.5222 -3.2570 -0.7045 30 6 1.9358 -2.1548 -1.4599 31 1 -0.3934 0.4416 -0.7650 32 1 1.7924 -0.5138 0.8900 33 1 1.5614 2.4679 1.2085 34 1 3.5345 1.7704 -0.0322 35 1 2.5960 0.9264 -2.4633 36 1 3.2035 -0.9222 -4.1021 37 1 3.0627 -3.7849 -4.2203 38 1 1.5759 -6.9986 -1.3924 39 1 1.2752 -9.4268 -1.0406 40 1 3.0462 -9.2499 -1.0130 41 1 2.3925 -11.6170 -1.3598 42 1 3.2453 -10.9744 -2.7841 43 1 3.6502 -14.7985 -4.2893 44 1 1.7111 -16.1474 -4.9553 45 1 -0.7050 -12.9331 -3.8583 46 1 1.9560 -10.3200 -4.8217 47 1 0.1852 -10.4967 -4.8492 48 1 -0.0138 -8.7729 -3.0786 49 1 0.8388 -8.1300 -4.5027 50 1 1.3333 -5.3649 -0.6239 51 1 1.0930 -3.1100 0.2757 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12335838.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:18:59 Heat of formation + Delta-G solvation = -11.112014 kcal Electronic energy + Delta-G solvation = -35288.552937 eV Core-core repulsion = 30540.486648 eV Total energy + Delta-G solvation = -4748.066290 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.168 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.89953 -42.42748 -41.12056 -39.66866 -38.55265 -37.81755 -37.40376 -35.87714 -35.16319 -33.22022 -32.63622 -31.80338 -30.96215 -30.68566 -29.64236 -26.49648 -25.97953 -25.46085 -24.42419 -23.74777 -23.57272 -22.55070 -21.42548 -20.90242 -20.66519 -19.77105 -19.36446 -19.12499 -18.30023 -17.84445 -17.71850 -17.15768 -17.07101 -16.91455 -16.32122 -16.09243 -16.00473 -15.66966 -15.61431 -15.53011 -15.21811 -15.18315 -15.01362 -14.80535 -14.71701 -14.46139 -14.33631 -14.06451 -14.01351 -13.93008 -13.42902 -13.16487 -13.06529 -12.62444 -12.48927 -12.34018 -12.26689 -12.25141 -12.10901 -12.02926 -11.90896 -11.59343 -11.38884 -11.31582 -11.09427 -11.00047 -10.75571 -10.27967 -10.09355 -9.66909 -9.33302 -8.76191 -4.96228 -0.45590 -0.28925 0.40152 0.67814 1.40463 1.44512 1.55915 1.72696 1.95117 1.95684 2.06702 2.29547 2.50205 2.78332 2.90083 3.41422 3.56102 3.63196 3.65286 3.68945 3.72666 3.77912 3.92201 3.94855 3.98957 4.14680 4.17400 4.18537 4.29828 4.33148 4.37175 4.41021 4.50213 4.51104 4.53146 4.57395 4.61301 4.67907 4.79890 4.84031 4.88639 4.98492 5.02861 5.08555 5.17454 5.22932 5.25391 5.32929 5.35305 5.42187 5.45093 5.47333 5.52214 5.59986 5.64383 6.01025 6.53333 6.56687 6.66597 6.70997 6.91845 7.20529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.037 4.037 3 Si 0.791 3.209 4 C -0.236 4.236 5 C 0.095 3.905 6 N -0.578 5.578 7 C 0.065 3.935 8 C -0.069 4.069 9 C -0.137 4.137 10 C 0.562 3.438 11 O -0.582 6.582 12 N -0.707 5.707 13 C 0.142 3.858 14 H 0.067 0.933 15 C -0.118 4.118 16 C -0.092 4.092 17 C -0.040 4.040 18 H 0.133 0.867 19 C 0.410 3.590 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.319 4.319 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.103 4.103 27 C -0.121 4.121 28 C -0.106 4.106 29 C -0.087 4.087 30 C -0.083 4.083 31 H 0.393 0.607 32 H 0.097 0.903 33 H -0.306 1.306 34 H -0.285 1.285 35 H 0.218 0.782 36 H 0.434 0.566 37 H 0.127 0.873 38 H 0.415 0.585 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.198 0.802 44 H 0.159 0.841 45 H 0.429 0.571 46 H 0.062 0.938 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.050 0.950 50 H 0.155 0.845 51 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.803 7.813 3.026 8.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.147 4.147 3 Si 0.697 3.303 4 C -0.243 4.243 5 C -0.034 4.034 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.090 4.090 9 C -0.142 4.142 10 C 0.351 3.649 11 O -0.463 6.463 12 N -0.359 5.359 13 C 0.038 3.962 14 H 0.085 0.915 15 C -0.156 4.156 16 C -0.130 4.130 17 C -0.060 4.060 18 H 0.150 0.850 19 C 0.145 3.855 20 N -0.268 5.268 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.310 3.690 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.142 4.142 27 C -0.159 4.159 28 C -0.125 4.125 29 C -0.106 4.106 30 C -0.088 4.088 31 H 0.243 0.757 32 H 0.114 0.886 33 H -0.234 1.234 34 H -0.212 1.212 35 H 0.234 0.766 36 H 0.275 0.725 37 H 0.145 0.855 38 H 0.253 0.747 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.215 0.785 44 H 0.177 0.823 45 H 0.269 0.731 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.109 0.891 49 H 0.069 0.931 50 H 0.172 0.828 51 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 2.044 7.759 3.032 8.578 hybrid contribution -0.811 -1.146 -0.385 1.456 sum 1.233 6.613 2.647 7.229 Atomic orbital electron populations 1.86457 1.17880 1.82297 1.50266 1.24512 0.84604 1.10051 0.95569 0.94082 0.77139 0.73769 0.85303 1.20856 1.12575 0.91602 0.99258 1.22353 0.97226 0.95770 0.88081 1.41825 1.54149 1.03305 1.18857 1.18137 1.03905 0.86900 0.95195 1.20149 0.99922 0.88875 1.00050 1.19512 1.05992 0.91968 0.96683 1.18332 0.76907 0.85412 0.84257 1.90770 1.46723 1.86759 1.22046 1.45856 1.63269 1.05495 1.21245 1.21086 0.98660 0.80417 0.96043 0.91515 1.21798 1.04651 0.92793 0.96366 1.21323 0.96800 0.95873 0.99048 1.20681 1.03585 0.83996 0.97738 0.84969 1.23710 0.81610 0.94427 0.85720 1.68389 1.20087 1.14723 1.23602 1.23179 1.00925 0.87410 0.85158 1.23004 0.91193 1.05558 1.14532 1.17661 0.91748 0.81020 0.78616 1.90988 1.41717 1.61053 1.53815 1.44632 1.12682 1.15468 1.52459 1.21483 1.03218 0.93236 0.96305 1.21821 0.99032 0.95441 0.99624 1.20913 0.99473 0.98057 0.94083 1.20411 0.99252 0.90856 1.00077 1.19581 1.01018 0.94283 0.93920 0.75730 0.88569 1.23373 1.21230 0.76572 0.72531 0.85488 0.74677 0.88599 0.90105 0.89921 0.90757 0.78530 0.82349 0.73076 0.91876 0.90397 0.89109 0.93072 0.82793 0.84590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.48 12.88 -148.98 -1.92 -1.44 16 2 C -0.04 0.08 3.06 71.24 0.22 0.30 16 3 Si 0.79 -4.26 30.75 68.60 2.11 -2.15 16 4 C -0.24 0.32 5.57 -18.64 -0.10 0.21 16 5 C 0.09 -0.61 10.43 83.09 0.87 0.26 16 6 N -0.58 2.44 6.07 -187.72 -1.14 1.30 16 7 C 0.07 0.14 7.26 38.96 0.28 0.43 16 8 C -0.07 -0.30 9.61 22.63 0.22 -0.09 16 9 C -0.14 -0.45 5.87 -20.08 -0.12 -0.57 16 10 C 0.56 2.66 7.72 86.71 0.67 3.33 16 11 O -0.58 -7.53 15.97 -4.00 -0.06 -7.60 16 12 N -0.71 2.25 5.03 -445.66 -2.24 0.01 16 13 C 0.14 -0.58 2.45 44.99 0.11 -0.47 16 14 H 0.07 0.13 7.58 -2.39 -0.02 0.11 16 15 C -0.12 1.15 5.39 30.59 0.16 1.32 16 16 C -0.09 0.76 4.67 30.60 0.14 0.90 16 17 C -0.04 0.35 2.48 -11.54 -0.03 0.32 16 18 H 0.13 -1.90 8.14 -2.39 -0.02 -1.92 16 19 C 0.41 -1.36 6.73 138.18 0.93 -0.43 16 20 N -0.54 0.41 9.11 -187.56 -1.71 -1.30 16 21 C 0.17 -0.18 11.20 83.96 0.94 0.76 16 22 C -0.32 -1.11 10.07 22.48 0.23 -0.89 16 23 C 0.51 3.91 7.75 84.89 0.66 4.57 16 24 O -0.59 -10.10 17.97 -5.26 -0.09 -10.19 16 25 N -0.61 0.53 5.25 -310.70 -1.63 -1.10 16 26 C -0.10 0.66 5.18 30.58 0.16 0.81 16 27 C -0.12 0.61 5.49 30.58 0.17 0.78 16 28 C -0.11 0.11 9.46 22.28 0.21 0.32 16 29 C -0.09 -0.11 10.03 22.20 0.22 0.12 16 30 C -0.08 -0.23 6.35 -20.14 -0.13 -0.36 16 31 H 0.39 -3.57 8.70 -74.06 -0.64 -4.22 16 32 H 0.10 0.02 7.96 -2.39 -0.02 0.01 16 33 H -0.31 -0.99 7.11 99.48 0.71 -0.28 16 34 H -0.29 0.13 7.11 99.48 0.71 0.84 16 35 H 0.22 -3.31 6.35 -2.91 -0.02 -3.33 16 36 H 0.43 -4.22 8.96 -92.71 -0.83 -5.05 16 37 H 0.13 0.65 7.62 -2.91 -0.02 0.63 16 38 H 0.41 -3.82 6.59 -92.71 -0.61 -4.43 16 39 H 0.10 -1.33 8.14 -2.38 -0.02 -1.35 16 40 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.08 -0.72 8.14 -2.39 -0.02 -0.74 16 42 H 0.07 -0.34 7.76 -2.39 -0.02 -0.36 16 43 H 0.20 -1.43 8.06 -2.91 -0.02 -1.46 16 44 H 0.16 0.36 8.06 -2.91 -0.02 0.33 16 45 H 0.43 -2.40 8.78 -92.70 -0.81 -3.21 16 46 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 47 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 48 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 49 H 0.05 0.05 8.14 -2.39 -0.02 0.03 16 50 H 0.15 -1.26 6.36 -2.91 -0.02 -1.28 16 51 H 0.14 -0.12 8.06 -2.91 -0.02 -0.14 16 Total: 0.00 -36.31 420.00 -2.70 -39.01 By element: Atomic # 1 Polarization: -26.35 SS G_CDS: -1.83 Total: -28.17 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 5.81 Total: 11.63 kcal Atomic # 7 Polarization: 5.62 SS G_CDS: -6.72 Total: -1.09 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -2.08 Total: -19.23 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.11 Total: -2.15 kcal Total: -36.31 -2.70 -39.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12335838.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.901 kcal (2) G-P(sol) polarization free energy of solvation -36.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds