Wall clock time and date at job start Sun Mar 7 2021 03:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.46873 * 2 1 4 4 C 1.50695 * 109.47202 * 120.00096 * 2 1 3 5 5 C 1.38399 * 119.83176 * 64.99727 * 4 2 1 6 6 C 1.37886 * 120.17581 * 179.97438 * 5 4 2 7 7 C 1.39836 * 119.82368 * 0.02562 * 6 5 4 8 8 C 1.47212 * 120.16944 * 179.97438 * 7 6 5 9 9 C 1.34816 * 119.99839 * 180.02562 * 8 7 6 10 10 C 1.46427 * 119.99519 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00521 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99504 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99832 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47132 * 325.00740 * 13 12 10 15 15 C 1.53004 * 109.46622 * 84.99880 * 13 12 10 16 16 C 1.53005 * 109.46760 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46909 * 299.99546 * 16 15 13 18 18 H 1.08997 * 109.47344 * 300.00758 * 17 16 15 19 19 C 1.50700 * 109.47408 * 180.02562 * 17 16 15 20 20 N 1.30639 * 119.25571 * 265.03008 * 19 17 16 21 21 C 1.33515 * 121.50561 * 179.97438 * 20 19 17 22 22 C 1.36204 * 119.91119 * 359.70696 * 21 20 19 23 23 C 1.41020 * 118.59033 * 0.55464 * 22 21 20 24 24 O 1.21983 * 120.71127 * 179.72410 * 23 22 21 25 25 N 1.34743 * 119.25231 * 84.99886 * 19 17 16 26 26 C 1.53002 * 109.46932 * 60.00249 * 17 16 15 27 27 C 1.52991 * 109.47321 * 204.99550 * 13 12 10 28 28 C 1.39833 * 119.66208 * 0.24924 * 7 6 5 29 29 C 1.37888 * 119.82565 * 359.51797 * 28 7 6 30 30 H 0.96701 * 113.99727 * 299.99433 * 1 2 3 31 31 H 1.08996 * 109.46993 * 240.00192 * 2 1 3 32 32 H 1.48502 * 110.00174 * 300.00123 * 3 2 1 33 33 H 1.48501 * 110.00265 * 61.31896 * 3 2 1 34 34 H 1.08002 * 119.91454 * 0.03122 * 5 4 2 35 35 H 1.08001 * 120.08865 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99932 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00260 * 359.97438 * 9 8 7 38 38 H 0.96995 * 120.00438 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47284 * 299.99883 * 15 13 12 40 40 H 1.08995 * 109.47400 * 60.00461 * 15 13 12 41 41 H 1.09005 * 109.47070 * 180.02562 * 16 15 13 42 42 H 1.08990 * 109.47385 * 60.00224 * 16 15 13 43 43 H 1.08005 * 120.04456 * 180.02562 * 21 20 19 44 44 H 1.07997 * 120.70573 * 180.30814 * 22 21 20 45 45 H 0.97006 * 120.04088 * 0.05344 * 25 19 17 46 46 H 1.09002 * 109.47101 * 59.99898 * 26 17 16 47 47 H 1.09004 * 109.47177 * 179.97438 * 26 17 16 48 48 H 1.09009 * 109.46931 * 60.00323 * 27 13 12 49 49 H 1.09003 * 109.47684 * 300.00908 * 27 13 12 50 50 H 1.08007 * 120.08940 * 179.74752 * 28 7 6 51 51 H 1.07998 * 119.91742 * 180.23467 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6825 -2.0618 1.3950 6 6 2.1393 -2.7190 2.5178 7 6 2.8553 -2.0163 3.4919 8 6 3.3460 -2.7102 4.6938 9 6 4.0355 -2.0292 5.6310 10 6 4.5231 -2.7194 6.8269 11 8 4.3056 -3.9075 6.9750 12 7 5.2120 -2.0385 7.7640 13 6 5.6994 -2.7288 8.9608 14 1 4.9813 -3.4935 9.2569 15 6 7.0475 -3.3856 8.6571 16 6 7.5563 -4.1071 9.9067 17 6 7.7252 -3.0985 11.0447 18 1 8.4434 -2.3338 10.7488 19 6 8.2269 -3.8090 12.2754 20 7 7.3687 -4.2140 13.1732 21 6 7.7636 -4.8482 14.2798 22 6 9.0876 -5.0905 14.4879 23 6 10.0147 -4.6482 13.5217 24 8 11.2100 -4.8401 13.6714 25 7 9.5505 -4.0125 12.4245 26 6 6.3771 -2.4417 11.3483 27 6 5.8685 -1.7199 10.0983 28 6 3.0977 -0.6498 3.3212 29 6 2.6386 -0.0077 2.1905 30 1 -0.3933 0.4416 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 1.5614 2.4679 -1.2085 33 1 1.5879 2.4586 1.2242 34 1 1.1298 -2.6034 0.6415 35 1 1.9438 -3.7736 2.6449 36 1 3.1529 -3.7647 4.8252 37 1 4.2282 -0.9747 5.4999 38 1 5.3850 -1.0914 7.6462 39 1 6.9271 -4.1045 7.8466 40 1 7.7657 -2.6210 8.3609 41 1 8.5169 -4.5747 9.6905 42 1 6.8381 -4.8718 10.2025 43 1 7.0336 -5.1733 15.0064 44 1 9.4208 -5.6068 15.3761 45 1 10.1692 -3.7026 11.7447 46 1 5.6589 -3.2063 11.6442 47 1 6.4974 -1.7234 12.1594 48 1 4.9080 -1.2519 10.3147 49 1 6.5865 -0.9552 9.8021 50 1 3.6465 -0.0993 4.0711 51 1 2.8283 1.0468 2.0554 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_12360594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:19:43 Heat of formation + Delta-G solvation = -26.454480 kcal Electronic energy + Delta-G solvation = -32784.121692 eV Core-core repulsion = 28229.042154 eV Total energy + Delta-G solvation = -4555.079537 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.173 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.86675 -41.16715 -40.67328 -39.59030 -38.41938 -37.93109 -35.89540 -35.16518 -35.06782 -32.63755 -32.28411 -32.03489 -31.38950 -30.14398 -27.29782 -25.90960 -25.38163 -24.29007 -23.94296 -23.88777 -22.68575 -21.81312 -21.29397 -20.33512 -19.75175 -19.12288 -18.90962 -18.15989 -17.86175 -17.58297 -17.00212 -16.93271 -16.65836 -16.27652 -16.21585 -15.96152 -15.79254 -15.58926 -15.41604 -15.27589 -15.18059 -14.90895 -14.64808 -14.44096 -14.20410 -14.10366 -14.02634 -13.89916 -13.58078 -13.37626 -13.30948 -13.08011 -12.65912 -12.50312 -12.35948 -12.33459 -12.14753 -12.05742 -11.80295 -11.66762 -11.49265 -11.38933 -11.20975 -11.11957 -10.91275 -10.67932 -10.13165 -10.09006 -9.56771 -9.34027 -5.04503 -0.61737 -0.47459 0.28237 0.78232 0.85224 1.19435 1.50428 1.55519 1.88772 2.09101 2.25324 2.54464 2.67171 2.72341 3.24093 3.28048 3.40161 3.47421 3.51135 3.56717 3.60505 3.69720 3.77334 3.78923 3.96123 3.97924 4.06394 4.10942 4.12339 4.18435 4.22513 4.23062 4.27198 4.34378 4.43372 4.47258 4.50943 4.58663 4.73644 4.78764 4.83561 4.85643 4.86373 4.92207 4.97238 5.00572 5.05558 5.10634 5.21439 5.28534 5.37602 5.39946 5.42730 5.45916 5.52061 5.78622 6.31089 6.46222 6.69224 6.79364 7.21628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.528 6.528 2 C -0.078 4.078 3 Si 0.686 3.314 4 C -0.105 4.105 5 C -0.094 4.094 6 C -0.092 4.092 7 C -0.073 4.073 8 C -0.015 4.015 9 C -0.215 4.215 10 C 0.549 3.451 11 O -0.541 6.541 12 N -0.724 5.724 13 C 0.143 3.857 14 H 0.093 0.907 15 C -0.127 4.127 16 C -0.109 4.109 17 C -0.046 4.046 18 H 0.101 0.899 19 C 0.403 3.597 20 N -0.533 5.533 21 C 0.156 3.844 22 C -0.293 4.293 23 C 0.519 3.481 24 O -0.537 6.537 25 N -0.627 5.627 26 C -0.096 4.096 27 C -0.128 4.128 28 C -0.096 4.096 29 C -0.121 4.121 30 H 0.376 0.624 31 H 0.120 0.880 32 H -0.256 1.256 33 H -0.260 1.260 34 H 0.130 0.870 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.401 0.599 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.171 0.829 44 H 0.157 0.843 45 H 0.418 0.582 46 H 0.089 0.911 47 H 0.075 0.925 48 H 0.078 0.922 49 H 0.071 0.929 50 H 0.131 0.869 51 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.791 5.370 -2.061 5.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.335 6.335 2 C -0.188 4.188 3 Si 0.588 3.412 4 C -0.106 4.106 5 C -0.112 4.112 6 C -0.110 4.110 7 C -0.073 4.073 8 C -0.035 4.035 9 C -0.236 4.236 10 C 0.338 3.662 11 O -0.420 6.420 12 N -0.374 5.374 13 C 0.038 3.962 14 H 0.111 0.889 15 C -0.165 4.165 16 C -0.148 4.148 17 C -0.067 4.067 18 H 0.119 0.881 19 C 0.138 3.862 20 N -0.256 5.256 21 C 0.018 3.982 22 C -0.318 4.318 23 C 0.318 3.682 24 O -0.415 6.415 25 N -0.266 5.266 26 C -0.134 4.134 27 C -0.166 4.166 28 C -0.113 4.113 29 C -0.138 4.138 30 H 0.224 0.776 31 H 0.138 0.862 32 H -0.181 1.181 33 H -0.185 1.185 34 H 0.148 0.852 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.236 0.764 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.188 0.812 44 H 0.175 0.825 45 H 0.256 0.744 46 H 0.108 0.892 47 H 0.094 0.906 48 H 0.096 0.904 49 H 0.089 0.911 50 H 0.149 0.851 51 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.206 4.896 -2.171 5.490 hybrid contribution 0.207 0.230 0.476 0.568 sum -0.999 5.126 -1.695 5.490 Atomic orbital electron populations 1.86621 1.17544 1.79967 1.49319 1.25079 0.84090 1.11124 0.98479 0.94969 0.91605 0.74402 0.80240 1.20461 0.98661 0.94919 0.96536 1.21006 0.98768 0.93724 0.97724 1.21469 0.96220 1.00209 0.93118 1.19076 0.99736 0.93619 0.94860 1.22419 0.90807 1.00029 0.90218 1.22903 1.04281 1.00855 0.95571 1.18335 0.77714 0.86826 0.83331 1.90842 1.57610 1.15279 1.78264 1.45938 1.56789 1.13238 1.21484 1.21037 0.95864 0.95208 0.84058 0.88868 1.21906 0.96623 1.00380 0.97619 1.21567 1.02617 0.97456 0.93138 1.20560 0.99904 0.97239 0.88948 0.88100 1.23205 0.79474 0.88711 0.94804 1.68293 1.34114 1.18991 1.04232 1.22764 0.94938 0.88195 0.92301 1.22976 0.93818 1.11228 1.03744 1.17362 0.89945 0.79119 0.81775 1.91030 1.16122 1.57429 1.76903 1.44773 1.09250 1.49483 1.23044 1.21376 0.94666 1.00399 0.96964 1.21861 1.02528 0.97869 0.94341 1.21348 0.98964 0.93602 0.97428 1.21004 0.98825 0.99817 0.94163 0.77599 0.86239 1.18140 1.18504 0.85180 0.85040 0.84465 0.85206 0.76438 0.90497 0.91250 0.91082 0.90141 0.81233 0.82515 0.74375 0.89203 0.90604 0.90362 0.91079 0.85079 0.85224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.53 -0.27 12.83 -35.23 -0.45 -0.72 16 2 C -0.08 0.09 2.80 36.00 0.10 0.19 16 3 Si 0.69 -1.29 29.87 -169.99 -5.08 -6.36 16 4 C -0.11 0.10 5.36 -104.50 -0.56 -0.46 16 5 C -0.09 0.05 9.66 -39.65 -0.38 -0.33 16 6 C -0.09 0.06 9.80 -39.11 -0.38 -0.32 16 7 C -0.07 0.06 5.87 -105.06 -0.62 -0.56 16 8 C -0.02 0.01 9.46 -37.15 -0.35 -0.34 16 9 C -0.22 0.31 9.41 -37.50 -0.35 -0.04 16 10 C 0.55 0.23 7.71 -12.96 -0.10 0.13 16 11 O -0.54 -2.45 15.89 5.19 0.08 -2.36 16 12 N -0.72 1.87 5.07 -55.20 -0.28 1.59 16 13 C 0.14 -0.37 2.45 -67.93 -0.17 -0.53 16 14 H 0.09 -0.02 7.57 -51.93 -0.39 -0.41 16 15 C -0.13 0.36 5.49 -26.73 -0.15 0.22 16 16 C -0.11 0.36 5.19 -26.73 -0.14 0.22 16 17 C -0.05 0.18 2.48 -91.77 -0.23 -0.04 16 18 H 0.10 -0.59 8.14 -51.93 -0.42 -1.02 16 19 C 0.40 -0.62 6.73 -155.57 -1.05 -1.66 16 20 N -0.53 0.15 9.12 -10.63 -0.10 0.05 16 21 C 0.16 -0.08 11.20 -17.55 -0.20 -0.27 16 22 C -0.29 -0.34 10.07 -39.26 -0.40 -0.74 16 23 C 0.52 1.59 7.75 -15.09 -0.12 1.48 16 24 O -0.54 -3.90 17.97 4.93 0.09 -3.81 16 25 N -0.63 0.39 5.25 -12.27 -0.06 0.33 16 26 C -0.10 0.36 4.67 -26.71 -0.12 0.24 16 27 C -0.13 0.58 5.39 -26.71 -0.14 0.43 16 28 C -0.10 0.17 9.41 -39.11 -0.37 -0.20 16 29 C -0.12 0.20 8.65 -39.65 -0.34 -0.14 16 30 H 0.38 -0.86 8.70 45.56 0.40 -0.46 16 31 H 0.12 -0.21 7.96 -51.93 -0.41 -0.63 16 32 H -0.26 -0.42 7.11 56.52 0.40 -0.02 16 33 H -0.26 0.03 7.00 56.52 0.40 0.43 16 34 H 0.13 -0.14 8.06 -52.49 -0.42 -0.56 16 35 H 0.13 -0.27 8.06 -52.49 -0.42 -0.69 16 36 H 0.14 0.02 7.52 -52.49 -0.39 -0.37 16 37 H 0.13 -0.55 6.07 -52.49 -0.32 -0.87 16 38 H 0.40 -2.14 8.58 -40.82 -0.35 -2.49 16 39 H 0.08 -0.04 8.14 -51.93 -0.42 -0.47 16 40 H 0.07 -0.28 8.14 -51.93 -0.42 -0.70 16 41 H 0.07 -0.26 8.14 -51.93 -0.42 -0.68 16 42 H 0.08 -0.15 8.14 -51.93 -0.42 -0.58 16 43 H 0.17 -0.54 8.06 -52.48 -0.42 -0.97 16 44 H 0.16 0.04 8.06 -52.49 -0.42 -0.38 16 45 H 0.42 -1.19 8.78 -40.82 -0.36 -1.55 16 46 H 0.09 -0.22 7.76 -51.93 -0.40 -0.62 16 47 H 0.08 -0.27 8.14 -51.93 -0.42 -0.70 16 48 H 0.08 -0.33 8.14 -51.92 -0.42 -0.76 16 49 H 0.07 -0.40 8.14 -51.93 -0.42 -0.83 16 50 H 0.13 -0.53 6.17 -52.48 -0.32 -0.85 16 51 H 0.13 -0.43 4.81 -52.49 -0.25 -0.68 16 LS Contribution 420.96 15.07 6.34 6.34 Total: 0.00 -11.91 420.96 -12.61 -24.51 By element: Atomic # 1 Polarization: -9.75 SS G_CDS: -7.09 Total: -16.84 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -6.06 Total: -2.74 kcal Atomic # 7 Polarization: 2.42 SS G_CDS: -0.44 Total: 1.98 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.28 Total: -6.89 kcal Atomic # 14 Polarization: -1.29 SS G_CDS: -5.08 Total: -6.36 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -11.91 -12.61 -24.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12360594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.941 kcal (2) G-P(sol) polarization free energy of solvation -11.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds