Wall clock time and date at job start Sun Mar 7 2021 03:19:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86299 * 109.46873 * 2 1 4 4 C 1.50695 * 109.47202 * 120.00096 * 2 1 3 5 5 C 1.38399 * 119.83176 * 64.99727 * 4 2 1 6 6 C 1.37886 * 120.17581 * 179.97438 * 5 4 2 7 7 C 1.39836 * 119.82368 * 0.02562 * 6 5 4 8 8 C 1.47212 * 120.16944 * 179.97438 * 7 6 5 9 9 C 1.34816 * 119.99839 * 180.02562 * 8 7 6 10 10 C 1.46427 * 119.99519 * 179.97438 * 9 8 7 11 11 O 1.21693 * 120.00521 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99504 * 180.02562 * 10 9 8 13 13 C 1.46507 * 119.99832 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47132 * 325.00740 * 13 12 10 15 15 C 1.53004 * 109.46622 * 84.99880 * 13 12 10 16 16 C 1.53005 * 109.46760 * 180.02562 * 15 13 12 17 17 C 1.53000 * 109.46909 * 299.99546 * 16 15 13 18 18 H 1.08997 * 109.47344 * 300.00758 * 17 16 15 19 19 C 1.50700 * 109.47408 * 180.02562 * 17 16 15 20 20 N 1.30639 * 119.25571 * 265.03008 * 19 17 16 21 21 C 1.33515 * 121.50561 * 179.97438 * 20 19 17 22 22 C 1.36204 * 119.91119 * 359.70696 * 21 20 19 23 23 C 1.41020 * 118.59033 * 0.55464 * 22 21 20 24 24 O 1.21983 * 120.71127 * 179.72410 * 23 22 21 25 25 N 1.34743 * 119.25231 * 84.99886 * 19 17 16 26 26 C 1.53002 * 109.46932 * 60.00249 * 17 16 15 27 27 C 1.52991 * 109.47321 * 204.99550 * 13 12 10 28 28 C 1.39833 * 119.66208 * 0.24924 * 7 6 5 29 29 C 1.37888 * 119.82565 * 359.51797 * 28 7 6 30 30 H 0.96701 * 113.99727 * 299.99433 * 1 2 3 31 31 H 1.08996 * 109.46993 * 240.00192 * 2 1 3 32 32 H 1.48502 * 110.00174 * 300.00123 * 3 2 1 33 33 H 1.48501 * 110.00265 * 61.31896 * 3 2 1 34 34 H 1.08002 * 119.91454 * 0.03122 * 5 4 2 35 35 H 1.08001 * 120.08865 * 179.97438 * 6 5 4 36 36 H 1.08002 * 119.99932 * 359.97438 * 8 7 6 37 37 H 1.07996 * 120.00260 * 359.97438 * 9 8 7 38 38 H 0.96995 * 120.00438 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47284 * 299.99883 * 15 13 12 40 40 H 1.08995 * 109.47400 * 60.00461 * 15 13 12 41 41 H 1.09005 * 109.47070 * 180.02562 * 16 15 13 42 42 H 1.08990 * 109.47385 * 60.00224 * 16 15 13 43 43 H 1.08005 * 120.04456 * 180.02562 * 21 20 19 44 44 H 1.07997 * 120.70573 * 180.30814 * 22 21 20 45 45 H 0.97006 * 120.04088 * 0.05344 * 25 19 17 46 46 H 1.09002 * 109.47101 * 59.99898 * 26 17 16 47 47 H 1.09004 * 109.47177 * 179.97438 * 26 17 16 48 48 H 1.09009 * 109.46931 * 60.00323 * 27 13 12 49 49 H 1.09003 * 109.47684 * 300.00908 * 27 13 12 50 50 H 1.08007 * 120.08940 * 179.74752 * 28 7 6 51 51 H 1.07998 * 119.91742 * 180.23467 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 1.6825 -2.0618 1.3950 6 6 2.1393 -2.7190 2.5178 7 6 2.8553 -2.0163 3.4919 8 6 3.3460 -2.7102 4.6938 9 6 4.0355 -2.0292 5.6310 10 6 4.5231 -2.7194 6.8269 11 8 4.3056 -3.9075 6.9750 12 7 5.2120 -2.0385 7.7640 13 6 5.6994 -2.7288 8.9608 14 1 4.9813 -3.4935 9.2569 15 6 7.0475 -3.3856 8.6571 16 6 7.5563 -4.1071 9.9067 17 6 7.7252 -3.0985 11.0447 18 1 8.4434 -2.3338 10.7488 19 6 8.2269 -3.8090 12.2754 20 7 7.3687 -4.2140 13.1732 21 6 7.7636 -4.8482 14.2798 22 6 9.0876 -5.0905 14.4879 23 6 10.0147 -4.6482 13.5217 24 8 11.2100 -4.8401 13.6714 25 7 9.5505 -4.0125 12.4245 26 6 6.3771 -2.4417 11.3483 27 6 5.8685 -1.7199 10.0983 28 6 3.0977 -0.6498 3.3212 29 6 2.6386 -0.0077 2.1905 30 1 -0.3933 0.4416 0.7651 31 1 1.7923 -0.5138 -0.8900 32 1 1.5614 2.4679 -1.2085 33 1 1.5879 2.4586 1.2242 34 1 1.1298 -2.6034 0.6415 35 1 1.9438 -3.7736 2.6449 36 1 3.1529 -3.7647 4.8252 37 1 4.2282 -0.9747 5.4999 38 1 5.3850 -1.0914 7.6462 39 1 6.9271 -4.1045 7.8466 40 1 7.7657 -2.6210 8.3609 41 1 8.5169 -4.5747 9.6905 42 1 6.8381 -4.8718 10.2025 43 1 7.0336 -5.1733 15.0064 44 1 9.4208 -5.6068 15.3761 45 1 10.1692 -3.7026 11.7447 46 1 5.6589 -3.2063 11.6442 47 1 6.4974 -1.7234 12.1594 48 1 4.9080 -1.2519 10.3147 49 1 6.5865 -0.9552 9.8021 50 1 3.6465 -0.0993 4.0711 51 1 2.8283 1.0468 2.0554 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12360594.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:19:41 Heat of formation + Delta-G solvation = -28.358315 kcal Electronic energy + Delta-G solvation = -32784.204248 eV Core-core repulsion = 28229.042154 eV Total energy + Delta-G solvation = -4555.162094 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.173 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.89499 -41.10688 -40.54940 -39.58713 -38.49603 -37.88211 -35.85378 -35.12074 -35.04810 -32.61372 -32.16078 -31.78126 -31.30096 -30.03975 -27.20352 -25.85722 -25.38562 -24.17515 -23.81221 -23.69061 -22.56445 -21.72430 -21.10839 -20.21817 -19.76041 -19.15730 -18.82299 -18.09705 -17.81716 -17.49778 -17.06369 -16.84250 -16.57228 -16.18937 -16.13338 -15.93257 -15.70235 -15.62156 -15.29697 -15.11517 -15.06577 -14.84257 -14.51292 -14.42715 -14.14607 -14.05778 -13.95005 -13.78816 -13.41801 -13.24334 -13.14086 -13.02822 -12.48780 -12.33507 -12.25495 -12.10570 -12.06912 -12.02557 -11.58729 -11.57617 -11.38199 -11.32719 -11.28765 -11.08875 -10.94639 -10.60275 -10.04427 -9.96107 -9.66729 -9.21971 -4.90983 -0.51822 -0.45456 0.41580 0.67978 0.92304 1.31725 1.56231 1.60336 1.97814 2.22831 2.29363 2.50343 2.78934 2.83309 3.40781 3.42338 3.55710 3.61707 3.66416 3.72335 3.73593 3.83127 3.96885 4.00612 4.16598 4.18047 4.23590 4.24875 4.30655 4.37880 4.38488 4.42304 4.47906 4.50595 4.54166 4.59607 4.69092 4.85203 4.87027 4.88771 4.99621 5.03729 5.09055 5.12377 5.17419 5.21365 5.24971 5.34171 5.35460 5.41590 5.46107 5.48663 5.50028 5.61675 5.63413 5.92230 6.47616 6.63224 6.66837 6.71174 7.30499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.550 6.550 2 C -0.089 4.089 3 Si 0.772 3.228 4 C -0.110 4.110 5 C -0.107 4.107 6 C -0.105 4.105 7 C -0.079 4.079 8 C -0.026 4.026 9 C -0.205 4.205 10 C 0.541 3.459 11 O -0.593 6.593 12 N -0.707 5.707 13 C 0.141 3.859 14 H 0.062 0.938 15 C -0.120 4.120 16 C -0.104 4.104 17 C -0.039 4.039 18 H 0.133 0.867 19 C 0.409 3.591 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.319 4.319 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.093 4.093 27 C -0.117 4.117 28 C -0.094 4.094 29 C -0.123 4.123 30 H 0.386 0.614 31 H 0.123 0.877 32 H -0.308 1.308 33 H -0.277 1.277 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.120 0.880 37 H 0.165 0.835 38 H 0.419 0.581 39 H 0.049 0.951 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.061 0.939 43 H 0.198 0.802 44 H 0.159 0.841 45 H 0.429 0.571 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.159 0.841 51 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.437 7.912 -1.903 8.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.197 4.197 3 Si 0.677 3.323 4 C -0.110 4.110 5 C -0.125 4.125 6 C -0.123 4.123 7 C -0.080 4.080 8 C -0.046 4.046 9 C -0.226 4.226 10 C 0.331 3.669 11 O -0.475 6.475 12 N -0.357 5.357 13 C 0.037 3.963 14 H 0.081 0.919 15 C -0.158 4.158 16 C -0.143 4.143 17 C -0.059 4.059 18 H 0.151 0.849 19 C 0.145 3.855 20 N -0.269 5.269 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.310 3.690 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.132 4.132 27 C -0.154 4.154 28 C -0.112 4.112 29 C -0.140 4.140 30 H 0.235 0.765 31 H 0.140 0.860 32 H -0.236 1.236 33 H -0.203 1.203 34 H 0.146 0.854 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.183 0.817 38 H 0.257 0.743 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.095 0.905 42 H 0.079 0.921 43 H 0.214 0.786 44 H 0.176 0.824 45 H 0.269 0.731 46 H 0.091 0.909 47 H 0.100 0.900 48 H 0.098 0.902 49 H 0.115 0.885 50 H 0.177 0.823 51 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.855 7.475 -2.020 7.790 hybrid contribution -0.032 -0.560 0.380 0.678 sum -0.887 6.915 -1.641 7.162 Atomic orbital electron populations 1.86587 1.18592 1.80436 1.50181 1.25328 0.83424 1.12223 0.98751 0.94032 0.90166 0.71693 0.76393 1.20521 0.98912 0.94763 0.96833 1.21077 0.99308 0.94241 0.97906 1.21606 0.96623 1.00648 0.93398 1.19133 0.99934 0.94305 0.94585 1.22350 0.91726 0.99509 0.90973 1.23061 1.03202 1.02159 0.94133 1.18735 0.77615 0.86341 0.84210 1.90824 1.59701 1.17583 1.79404 1.45830 1.55340 1.13977 1.20599 1.21035 0.95202 0.95345 0.84755 0.91938 1.21823 0.96932 1.00277 0.96792 1.21497 1.02355 0.97249 0.93240 1.20679 1.00649 0.97344 0.87260 0.84907 1.23735 0.78829 0.87751 0.95193 1.68388 1.34499 1.19347 1.04617 1.23176 0.94736 0.86442 0.92330 1.23004 0.94327 1.12907 1.04075 1.17660 0.89469 0.79167 0.82751 1.90989 1.18126 1.60086 1.78353 1.44631 1.09899 1.48338 1.22362 1.21339 0.94161 1.00112 0.97546 1.21788 1.03397 0.97466 0.92792 1.21654 0.98526 0.93095 0.97897 1.21221 0.98323 1.00639 0.93845 0.76457 0.85955 1.23633 1.20284 0.85432 0.84771 0.86257 0.81733 0.74350 0.93179 0.88973 0.90471 0.92067 0.78562 0.82369 0.73057 0.90932 0.89984 0.90152 0.88499 0.82340 0.83407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.78 12.83 -148.98 -1.91 -2.69 16 2 C -0.09 0.21 2.80 71.23 0.20 0.40 16 3 Si 0.77 -3.32 29.87 68.60 2.05 -1.28 16 4 C -0.11 0.24 5.36 -19.79 -0.11 0.13 16 5 C -0.11 0.04 9.66 22.22 0.21 0.25 16 6 C -0.10 0.06 9.80 22.57 0.22 0.28 16 7 C -0.08 0.14 5.87 -20.15 -0.12 0.02 16 8 C -0.03 0.02 9.46 23.84 0.23 0.24 16 9 C -0.21 0.80 9.41 23.62 0.22 1.02 16 10 C 0.54 0.51 7.71 86.37 0.67 1.17 16 11 O -0.59 -6.50 15.89 -4.33 -0.07 -6.57 16 12 N -0.71 4.52 5.07 -446.76 -2.27 2.25 16 13 C 0.14 -0.81 2.45 44.99 0.11 -0.70 16 14 H 0.06 0.07 7.57 -2.39 -0.02 0.05 16 15 C -0.12 0.76 5.49 30.60 0.17 0.93 16 16 C -0.10 0.74 5.19 30.60 0.16 0.90 16 17 C -0.04 0.38 2.48 -11.54 -0.03 0.35 16 18 H 0.13 -2.03 8.14 -2.39 -0.02 -2.05 16 19 C 0.41 -1.58 6.73 138.18 0.93 -0.65 16 20 N -0.55 0.63 9.12 -187.56 -1.71 -1.08 16 21 C 0.17 -0.23 11.20 83.96 0.94 0.71 16 22 C -0.32 -1.01 10.07 22.48 0.23 -0.78 16 23 C 0.51 3.69 7.75 84.88 0.66 4.35 16 24 O -0.59 -9.84 17.97 -5.26 -0.09 -9.93 16 25 N -0.61 0.87 5.25 -310.69 -1.63 -0.76 16 26 C -0.09 0.85 4.67 30.61 0.14 0.99 16 27 C -0.12 1.31 5.39 30.61 0.17 1.47 16 28 C -0.09 0.50 9.41 22.57 0.21 0.71 16 29 C -0.12 0.60 8.65 22.23 0.19 0.79 16 30 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 31 H 0.12 -0.41 7.96 -2.39 -0.02 -0.43 16 32 H -0.31 -1.32 7.11 99.48 0.71 -0.62 16 33 H -0.28 0.44 7.00 99.48 0.70 1.14 16 34 H 0.13 -0.09 8.06 -2.91 -0.02 -0.12 16 35 H 0.13 -0.30 8.06 -2.91 -0.02 -0.33 16 36 H 0.12 0.31 7.52 -2.91 -0.02 0.28 16 37 H 0.17 -1.92 6.07 -2.91 -0.02 -1.94 16 38 H 0.42 -5.65 8.58 -92.71 -0.80 -6.44 16 39 H 0.05 -0.01 8.14 -2.38 -0.02 -0.03 16 40 H 0.09 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H 0.08 -0.61 8.14 -2.38 -0.02 -0.63 16 42 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.20 -1.49 8.06 -2.91 -0.02 -1.51 16 44 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 45 H 0.43 -2.67 8.78 -92.70 -0.81 -3.49 16 46 H 0.07 -0.37 7.76 -2.39 -0.02 -0.39 16 47 H 0.08 -0.78 8.14 -2.38 -0.02 -0.80 16 48 H 0.08 -0.86 8.14 -2.38 -0.02 -0.88 16 49 H 0.10 -1.51 8.14 -2.39 -0.02 -1.53 16 50 H 0.16 -1.83 6.17 -2.91 -0.02 -1.84 16 51 H 0.15 -1.32 4.81 -2.91 -0.01 -1.34 16 Total: 0.00 -32.11 420.96 -1.46 -33.57 By element: Atomic # 1 Polarization: -24.88 SS G_CDS: -1.23 Total: -26.10 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: 5.40 Total: 12.60 kcal Atomic # 7 Polarization: 6.01 SS G_CDS: -5.61 Total: 0.41 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -2.07 Total: -19.19 kcal Atomic # 14 Polarization: -3.32 SS G_CDS: 2.05 Total: -1.28 kcal Total: -32.11 -1.46 -33.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12360594.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.208 kcal (2) G-P(sol) polarization free energy of solvation -32.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds