Wall clock time and date at job start Sun Mar 7 2021 03:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35657 * 116.99883 * 2 1 4 4 C 1.40133 * 120.14955 * 180.27416 * 3 2 1 5 5 C 1.47534 * 120.19508 * 0.02562 * 4 3 2 6 6 O 1.21585 * 119.99762 * 0.27483 * 5 4 3 7 7 N 1.34774 * 120.00111 * 180.27666 * 5 4 3 8 8 C 1.46499 * 120.00205 * 180.02562 * 7 5 4 9 9 H 1.09001 * 109.47249 * 34.99854 * 8 7 5 10 10 C 1.53000 * 109.47264 * 154.99771 * 8 7 5 11 11 C 1.52998 * 109.46942 * 180.02562 * 10 8 7 12 12 C 1.52992 * 109.47380 * 299.99940 * 11 10 8 13 13 H 1.09000 * 109.47304 * 299.99746 * 12 11 10 14 14 C 1.50701 * 109.47511 * 180.02562 * 12 11 10 15 15 N 1.30646 * 119.25088 * 334.72716 * 14 12 11 16 16 C 1.33516 * 121.50613 * 179.75983 * 15 14 12 17 17 C 1.36200 * 119.90968 * 0.51503 * 16 15 14 18 18 C 1.41028 * 118.59294 * 359.74915 * 17 16 15 19 19 O 1.21983 * 120.71095 * 179.97438 * 18 17 16 20 20 N 1.34749 * 119.25676 * 154.99998 * 14 12 11 21 21 C 1.53000 * 109.47034 * 60.00116 * 12 11 10 22 22 C 1.52998 * 109.47100 * 299.99792 * 21 12 11 23 23 C 1.39711 * 119.61507 * 180.29743 * 4 3 2 24 24 C 1.37790 * 119.90971 * 359.72876 * 23 4 3 25 25 C 1.50698 * 119.85549 * 180.02562 * 24 23 4 26 26 O 1.42903 * 109.46543 * 299.97683 * 25 24 23 27 27 Si 1.86293 * 109.47374 * 179.97438 * 25 24 23 28 28 C 1.38555 * 120.29638 * 359.97438 * 24 23 4 29 29 C 1.38056 * 120.39120 * 0.02562 * 28 24 23 30 30 H 1.09002 * 109.47020 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47360 * 299.99357 * 1 2 3 32 32 H 1.08999 * 109.47288 * 59.99687 * 1 2 3 33 33 H 0.97010 * 120.00118 * 0.02562 * 7 5 4 34 34 H 1.09000 * 109.47384 * 300.00279 * 10 8 7 35 35 H 1.09001 * 109.46920 * 59.99881 * 10 8 7 36 36 H 1.09001 * 109.47426 * 60.00172 * 11 10 8 37 37 H 1.09006 * 109.47055 * 180.02562 * 11 10 8 38 38 H 1.08001 * 120.05131 * 180.26267 * 16 15 14 39 39 H 1.07998 * 120.70853 * 179.73612 * 17 16 15 40 40 H 0.96992 * 120.03764 * 359.95706 * 20 14 12 41 41 H 1.09001 * 109.46920 * 60.00290 * 21 12 11 42 42 H 1.09001 * 109.46861 * 179.97438 * 21 12 11 43 43 H 1.08995 * 109.47280 * 299.99894 * 22 21 12 44 44 H 1.09006 * 109.47213 * 179.97438 * 22 21 12 45 45 H 1.08002 * 120.04696 * 179.70491 * 23 4 3 46 46 H 1.08997 * 109.47309 * 59.96942 * 25 24 23 47 47 H 0.96704 * 114.00145 * 299.99607 * 26 25 24 48 48 H 1.48496 * 110.00386 * 58.67420 * 27 25 24 49 49 H 1.48498 * 110.00071 * 180.02562 * 27 25 24 50 50 H 1.07999 * 119.80331 * 180.02562 * 28 24 23 51 51 H 1.08002 * 119.95450 * 179.97438 * 29 28 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 3.4440 1.2858 -0.0058 5 6 4.2550 0.0533 -0.0125 6 8 3.7095 -1.0333 -0.0181 7 7 5.6004 0.1319 -0.0124 8 6 6.4057 -1.0919 -0.0197 9 1 5.9020 -1.8548 -0.6133 10 6 7.7780 -0.7958 -0.6280 11 6 8.6187 -2.0741 -0.6361 12 6 8.7945 -2.5780 0.7977 13 1 9.2985 -1.8155 1.3916 14 6 9.6231 -3.8367 0.7898 15 7 9.6440 -4.5806 -0.2840 16 6 10.3661 -5.7021 -0.3420 17 6 11.0943 -6.0976 0.7389 18 6 11.0677 -5.2976 1.9000 19 8 11.7050 -5.6156 2.8903 20 7 10.3214 -4.1724 1.8923 21 6 7.4222 -2.8740 1.4061 22 6 6.5815 -1.5958 1.4142 23 6 4.0666 2.5364 0.0006 24 6 3.3036 3.6838 0.0068 25 6 3.9765 5.0322 0.0131 26 8 4.7923 5.1518 1.1803 27 14 2.6823 6.3721 0.0199 28 6 1.9204 3.6033 0.0063 29 6 1.2923 2.3739 0.0000 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 6.0357 0.9989 -0.0076 34 1 7.6528 -0.4372 -1.6497 35 1 8.2816 -0.0329 -0.0344 36 1 8.1149 -2.8367 -1.2300 37 1 9.5966 -1.8631 -1.0691 38 1 10.3696 -6.2972 -1.2433 39 1 11.6796 -7.0047 0.7076 40 1 10.2879 -3.6064 2.6792 41 1 6.9184 -3.6366 0.8121 42 1 7.5476 -3.2335 2.4274 43 1 7.0854 -0.8333 2.0082 44 1 5.6037 -1.8068 1.8473 45 1 5.1445 2.6039 0.0010 46 1 4.5983 5.1321 -0.8765 47 1 4.3041 5.0727 2.0113 48 1 1.8079 6.2277 1.2114 49 1 3.3331 7.7068 0.0255 50 1 1.3301 4.5077 0.0108 51 1 0.2137 2.3195 0.0001 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12496546.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:19:49 Heat of formation + Delta-G solvation = -74.276806 kcal Electronic energy + Delta-G solvation = -35444.490227 eV Core-core repulsion = 30696.880906 eV Total energy + Delta-G solvation = -4747.609321 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.89964 -41.77904 -40.57279 -39.44488 -39.19636 -38.41848 -37.19767 -35.83915 -35.14196 -33.12024 -32.16852 -31.82981 -31.73156 -30.00817 -28.48561 -26.13672 -26.10234 -25.51009 -24.77023 -23.71830 -23.01943 -22.15478 -21.42999 -20.82030 -19.77859 -19.48342 -19.12618 -18.40244 -18.08334 -17.81405 -17.42230 -17.06775 -16.85052 -16.73264 -16.21918 -16.11480 -15.88612 -15.86027 -15.77941 -15.62322 -15.25477 -15.09492 -14.74194 -14.52365 -14.49843 -14.43506 -14.06720 -13.94962 -13.57762 -13.45452 -13.35204 -13.15061 -13.06516 -12.50544 -12.39182 -12.33347 -12.20786 -12.11873 -12.03402 -12.02575 -11.66480 -11.59092 -11.38482 -11.31069 -11.08923 -10.94185 -10.52763 -10.22961 -9.96557 -9.66907 -9.26257 -4.88057 -0.45768 -0.22666 0.24589 0.67699 1.35618 1.55633 1.63277 1.82632 2.01032 2.13810 2.29546 2.50100 2.71952 2.77997 3.40795 3.44292 3.55422 3.61718 3.64896 3.68379 3.72409 3.77160 3.98251 4.03344 4.15007 4.16922 4.21642 4.29622 4.31923 4.36724 4.36794 4.40557 4.44484 4.50103 4.52190 4.66152 4.67736 4.70515 4.76063 4.83474 4.88628 4.95106 5.02458 5.07695 5.13655 5.18114 5.23258 5.30450 5.32719 5.35221 5.44858 5.47706 5.58735 5.60733 6.32811 6.53763 6.58930 6.66360 6.70972 7.28977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.313 6.313 3 C 0.169 3.831 4 C -0.197 4.197 5 C 0.557 3.443 6 O -0.564 6.564 7 N -0.713 5.713 8 C 0.145 3.855 9 H 0.065 0.935 10 C -0.118 4.118 11 C -0.091 4.091 12 C -0.040 4.040 13 H 0.132 0.868 14 C 0.410 3.590 15 N -0.544 5.544 16 C 0.173 3.827 17 C -0.318 4.318 18 C 0.509 3.491 19 O -0.593 6.593 20 N -0.615 5.615 21 C -0.103 4.103 22 C -0.120 4.120 23 C -0.014 4.014 24 C -0.165 4.165 25 C -0.069 4.069 26 O -0.545 6.545 27 Si 0.756 3.244 28 C -0.044 4.044 29 C -0.214 4.214 30 H 0.106 0.894 31 H 0.071 0.929 32 H 0.074 0.926 33 H 0.412 0.588 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.198 0.802 39 H 0.159 0.841 40 H 0.428 0.572 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.154 0.846 46 H 0.133 0.867 47 H 0.386 0.614 48 H -0.283 1.283 49 H -0.306 1.306 50 H 0.155 0.845 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.356 8.017 -4.391 10.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.224 6.224 3 C 0.121 3.879 4 C -0.200 4.200 5 C 0.346 3.654 6 O -0.443 6.443 7 N -0.365 5.365 8 C 0.040 3.960 9 H 0.083 0.917 10 C -0.155 4.155 11 C -0.130 4.130 12 C -0.060 4.060 13 H 0.150 0.850 14 C 0.145 3.855 15 N -0.267 5.267 16 C 0.034 3.966 17 C -0.343 4.343 18 C 0.310 3.690 19 O -0.476 6.476 20 N -0.252 5.252 21 C -0.142 4.142 22 C -0.158 4.158 23 C -0.033 4.033 24 C -0.166 4.166 25 C -0.179 4.179 26 O -0.354 6.354 27 Si 0.662 3.338 28 C -0.062 4.062 29 C -0.232 4.232 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.250 0.750 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.215 0.785 39 H 0.177 0.823 40 H 0.269 0.731 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.107 0.893 44 H 0.067 0.933 45 H 0.172 0.828 46 H 0.150 0.850 47 H 0.235 0.765 48 H -0.210 1.210 49 H -0.235 1.235 50 H 0.172 0.828 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.473 7.514 -4.669 9.914 hybrid contribution 0.684 -0.416 2.318 2.452 sum -3.790 7.099 -2.352 8.384 Atomic orbital electron populations 1.23428 0.76666 1.05383 1.02785 1.86336 1.23063 1.26444 1.86583 1.19443 0.91493 0.85462 0.91502 1.19460 0.91076 0.94222 1.15290 1.18262 0.82833 0.88463 0.75888 1.90816 1.72544 1.30293 1.50678 1.45870 1.04951 1.10604 1.75117 1.21034 0.91912 0.86430 0.96604 0.91692 1.21793 0.92639 0.98615 1.02500 1.21323 1.01324 0.96936 0.93425 1.20667 0.94130 0.89830 1.01338 0.85049 1.23697 0.85995 0.94824 0.80944 1.68392 1.25668 1.08690 1.23972 1.23184 0.85338 0.89843 0.98278 1.23004 1.11218 1.05860 0.94196 1.17668 0.79809 0.81469 0.90082 1.90987 1.46572 1.72540 1.37537 1.44633 1.39435 1.23805 1.17356 1.21482 0.93031 0.98215 1.01461 1.21817 0.99670 0.97486 0.96864 1.21119 1.00840 0.89006 0.92333 1.20174 0.93730 0.95941 1.06723 1.25047 1.02753 0.98658 0.91412 1.86574 1.37725 1.94470 1.16584 0.94221 0.77717 0.74164 0.87685 1.21268 0.93941 0.97778 0.93168 1.21455 1.01701 0.91002 1.09089 0.87555 0.91088 0.90733 0.75037 0.90037 0.88768 0.90729 0.89857 0.78482 0.82333 0.73103 0.91894 0.90481 0.89297 0.93350 0.82840 0.84960 0.76460 1.20970 1.23474 0.82777 0.82277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.02 9.81 113.37 1.11 1.09 16 2 O -0.31 -2.31 8.57 -68.81 -0.59 -2.90 16 3 C 0.17 0.66 6.70 22.84 0.15 0.81 16 4 C -0.20 -0.59 5.89 -20.01 -0.12 -0.71 16 5 C 0.56 3.43 7.73 86.70 0.67 4.11 16 6 O -0.56 -8.58 14.82 16.94 0.25 -8.33 16 7 N -0.71 1.44 5.03 -445.71 -2.24 -0.80 16 8 C 0.14 -0.42 2.45 44.99 0.11 -0.31 16 9 H 0.06 0.22 7.58 -2.39 -0.02 0.20 16 10 C -0.12 1.05 5.39 30.59 0.16 1.22 16 11 C -0.09 0.70 4.67 30.59 0.14 0.84 16 12 C -0.04 0.32 2.48 -11.54 -0.03 0.29 16 13 H 0.13 -1.78 8.14 -2.39 -0.02 -1.80 16 14 C 0.41 -1.17 6.73 138.18 0.93 -0.24 16 15 N -0.54 0.22 9.12 -187.55 -1.71 -1.49 16 16 C 0.17 -0.13 11.20 83.96 0.94 0.81 16 17 C -0.32 -1.20 10.07 22.48 0.23 -0.97 16 18 C 0.51 4.08 7.75 84.89 0.66 4.74 16 19 O -0.59 -10.31 17.97 -5.26 -0.09 -10.41 16 20 N -0.61 0.27 5.25 -310.68 -1.63 -1.36 16 21 C -0.10 0.55 5.19 30.59 0.16 0.71 16 22 C -0.12 0.45 5.50 30.59 0.17 0.62 16 23 C -0.01 0.04 9.09 22.52 0.20 0.25 16 24 C -0.17 0.78 5.39 -19.90 -0.11 0.67 16 25 C -0.07 0.42 2.81 71.24 0.20 0.62 16 26 O -0.55 1.79 12.76 -148.98 -1.90 -0.11 16 27 Si 0.76 -4.50 29.77 68.60 2.04 -2.46 16 28 C -0.04 0.23 8.66 22.30 0.19 0.42 16 29 C -0.21 0.53 9.03 22.34 0.20 0.73 16 30 H 0.11 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.07 -0.37 7.66 -2.39 -0.02 -0.39 16 32 H 0.07 -0.42 7.66 -2.39 -0.02 -0.44 16 33 H 0.41 -3.31 6.63 -92.70 -0.61 -3.93 16 34 H 0.08 -0.70 8.14 -2.39 -0.02 -0.72 16 35 H 0.09 -1.21 8.14 -2.39 -0.02 -1.23 16 36 H 0.07 -0.29 7.76 -2.39 -0.02 -0.31 16 37 H 0.08 -0.69 8.14 -2.38 -0.02 -0.71 16 38 H 0.20 -1.40 8.06 -2.91 -0.02 -1.42 16 39 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.43 -2.19 8.78 -92.71 -0.81 -3.00 16 41 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 42 H 0.08 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.09 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 45 H 0.15 -1.20 6.40 -2.91 -0.02 -1.22 16 46 H 0.13 -1.11 7.96 -2.39 -0.02 -1.13 16 47 H 0.39 -3.09 8.70 -74.05 -0.64 -3.74 16 48 H -0.28 0.57 7.11 99.48 0.71 1.28 16 49 H -0.31 -0.84 7.11 99.48 0.71 -0.13 16 50 H 0.16 -1.53 4.85 -2.91 -0.01 -1.54 16 51 H 0.16 -1.14 6.30 -2.91 -0.02 -1.16 16 Total: 0.00 -33.83 413.71 -0.92 -34.75 By element: Atomic # 1 Polarization: -21.56 SS G_CDS: -1.02 Total: -22.59 kcal Atomic # 6 Polarization: 9.72 SS G_CDS: 5.98 Total: 15.70 kcal Atomic # 7 Polarization: 1.93 SS G_CDS: -5.58 Total: -3.65 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -2.33 Total: -21.75 kcal Atomic # 14 Polarization: -4.50 SS G_CDS: 2.04 Total: -2.46 kcal Total: -33.83 -0.92 -34.75 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12496546.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.526 kcal (2) G-P(sol) polarization free energy of solvation -33.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds