Wall clock time and date at job start Sun Mar 7 2021 03:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86301 * 109.46674 * 2 1 4 4 C 1.50699 * 109.46964 * 119.99947 * 2 1 3 5 5 C 1.37816 * 119.94180 * 15.28525 * 4 2 1 6 6 C 1.39665 * 119.87460 * 180.27443 * 5 4 2 7 7 C 1.47736 * 120.11750 * 179.71840 * 6 5 4 8 8 O 1.21574 * 119.99534 * 359.72199 * 7 6 5 9 9 N 1.34773 * 120.00096 * 179.45175 * 7 6 5 10 10 C 1.46496 * 119.99975 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47549 * 325.00416 * 10 9 7 12 12 C 1.53006 * 109.47004 * 84.99759 * 10 9 7 13 13 C 1.52996 * 109.47252 * 180.02562 * 12 10 9 14 14 C 1.53006 * 109.46988 * 299.99831 * 13 12 10 15 15 H 1.09000 * 109.47314 * 299.99992 * 14 13 12 16 16 C 1.50706 * 109.47064 * 179.97438 * 14 13 12 17 17 N 1.30638 * 119.25441 * 265.00106 * 16 14 13 18 18 C 1.33519 * 121.50548 * 179.97438 * 17 16 14 19 19 C 1.36200 * 119.90627 * 0.02562 * 18 17 16 20 20 C 1.41015 * 118.59588 * 359.97438 * 19 18 17 21 21 O 1.21982 * 120.70747 * 180.02562 * 20 19 18 22 22 N 1.34745 * 119.25175 * 84.73221 * 16 14 13 23 23 C 1.53005 * 109.46656 * 60.00190 * 14 13 12 24 24 C 1.52996 * 109.47267 * 299.99639 * 23 14 13 25 25 C 1.39628 * 119.76615 * 359.44362 * 6 5 4 26 26 C 1.37854 * 119.88114 * 0.27533 * 25 6 5 27 27 C 1.38628 * 120.11768 * 0.02562 * 26 25 6 28 28 F 1.35104 * 119.88366 * 179.97438 * 27 26 25 29 29 H 0.96696 * 113.99990 * 300.00045 * 1 2 3 30 30 H 1.08997 * 109.47274 * 240.00393 * 2 1 3 31 31 H 1.48502 * 109.99872 * 178.68209 * 3 2 1 32 32 H 1.48495 * 110.00315 * 300.00023 * 3 2 1 33 33 H 1.07998 * 120.06158 * 359.97438 * 5 4 2 34 34 H 0.97004 * 120.00022 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46845 * 300.00064 * 12 10 9 36 36 H 1.09000 * 109.47106 * 60.00284 * 12 10 9 37 37 H 1.08996 * 109.47402 * 180.02562 * 13 12 10 38 38 H 1.09003 * 109.47580 * 59.99969 * 13 12 10 39 39 H 1.08005 * 120.04463 * 179.97438 * 18 17 16 40 40 H 1.08008 * 120.70074 * 179.97438 * 19 18 17 41 41 H 0.97004 * 120.04390 * 359.97438 * 22 16 14 42 42 H 1.09003 * 109.46514 * 180.02562 * 23 14 13 43 43 H 1.08996 * 109.47353 * 60.00615 * 23 14 13 44 44 H 1.09000 * 109.47086 * 300.00433 * 24 23 14 45 45 H 1.08997 * 109.47381 * 180.02562 * 24 23 14 46 46 H 1.08007 * 120.06040 * 180.25156 * 25 6 5 47 47 H 1.08000 * 119.94369 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 1.0745 -1.4993 1.9672 6 6 1.5401 -2.1524 3.1106 7 6 0.6247 -2.9944 3.9079 8 8 -0.5374 -3.1156 3.5718 9 7 1.0791 -3.6325 5.0045 10 6 0.1712 -4.4670 5.7954 11 1 -0.8245 -4.0236 5.7934 12 6 0.1062 -5.8690 5.1861 13 6 -0.8425 -6.7404 6.0117 14 6 -0.3286 -6.8326 7.4499 15 1 0.6670 -7.2764 7.4523 16 6 -1.2634 -7.6905 8.2633 17 7 -2.2074 -7.1198 8.9632 18 6 -3.0604 -7.8362 9.6992 19 6 -2.9557 -9.1938 9.7309 20 6 -1.9368 -9.8100 8.9755 21 8 -1.8083 -11.0230 8.9755 22 7 -1.1100 -9.0291 8.2478 23 6 -0.2637 -5.4306 8.0591 24 6 0.6850 -4.5592 7.2336 25 6 2.8752 -2.0114 3.4943 26 6 3.7252 -1.2246 2.7468 27 6 3.2563 -0.5734 1.6163 28 9 4.0934 0.1970 0.8875 29 1 -0.3933 0.4417 0.7650 30 1 1.7924 -0.5137 -0.8900 31 1 3.5345 1.7704 0.0321 32 1 1.5614 2.4679 -1.2084 33 1 0.0438 -1.6083 1.6638 34 1 2.0074 -3.5392 5.2702 35 1 -0.2603 -5.8033 4.1617 36 1 1.1019 -6.3126 5.1881 37 1 -0.8885 -7.7392 5.5779 38 1 -1.8381 -6.2967 6.0093 39 1 -3.8319 -7.3398 10.2692 40 1 -3.6387 -9.7859 10.3222 41 1 -0.4044 -9.4309 7.7171 42 1 0.1029 -5.4963 9.0836 43 1 -1.2592 -4.9870 8.0569 44 1 1.6806 -5.0030 7.2360 45 1 0.7316 -3.5606 7.6678 46 1 3.2413 -2.5177 4.3753 47 1 4.7579 -1.1145 3.0429 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_12496548.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:19:55 Heat of formation + Delta-G solvation = -74.130467 kcal Electronic energy + Delta-G solvation = -33032.620196 eV Core-core repulsion = 28289.783056 eV Total energy + Delta-G solvation = -4742.837139 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.147 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -50.42470 -42.88274 -41.58400 -40.32118 -39.36291 -38.39227 -37.72857 -35.94728 -35.21580 -33.18542 -32.47029 -32.09611 -31.88190 -30.12797 -27.22701 -26.13877 -25.49130 -24.65006 -23.98178 -23.34261 -22.73848 -21.55964 -21.03846 -19.78027 -19.41933 -19.09941 -18.81029 -18.19723 -17.80158 -17.75462 -17.20418 -17.08263 -17.00066 -16.34910 -16.13855 -15.91910 -15.82060 -15.60773 -15.52788 -15.36409 -15.23497 -15.12814 -14.76805 -14.48574 -14.24321 -14.10199 -14.00367 -13.67456 -13.63722 -13.48891 -13.32230 -12.84406 -12.69407 -12.53768 -12.40114 -12.37644 -12.07352 -11.83540 -11.53417 -11.37610 -11.22745 -11.13663 -11.05661 -10.93207 -10.27323 -10.12817 -9.77712 -9.57981 -5.05666 -0.57372 -0.48670 -0.08882 0.77051 1.18517 1.54097 1.58893 1.63081 1.89928 1.99156 2.52759 2.53459 2.64925 2.90960 3.14003 3.21866 3.26765 3.36481 3.46932 3.49275 3.57547 3.59073 3.73233 3.80061 3.92563 3.95455 4.01384 4.07719 4.12729 4.21348 4.23873 4.30156 4.38539 4.45358 4.49420 4.55001 4.67297 4.74670 4.76527 4.80825 4.83394 4.89059 4.93697 4.94935 5.00286 5.06072 5.17242 5.31643 5.40267 5.41766 5.50490 6.31166 6.40406 6.67795 6.78294 7.06493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.535 6.535 2 C -0.066 4.066 3 Si 0.682 3.318 4 C -0.155 4.155 5 C -0.020 4.020 6 C -0.143 4.143 7 C 0.562 3.438 8 O -0.527 6.527 9 N -0.724 5.724 10 C 0.143 3.857 11 H 0.096 0.904 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.046 4.046 15 H 0.101 0.899 16 C 0.403 3.597 17 N -0.532 5.532 18 C 0.156 3.844 19 C -0.293 4.293 20 C 0.519 3.481 21 O -0.537 6.537 22 N -0.627 5.627 23 C -0.095 4.095 24 C -0.128 4.128 25 C -0.059 4.059 26 C -0.152 4.152 27 C 0.118 3.882 28 F -0.121 7.121 29 H 0.382 0.618 30 H 0.123 0.877 31 H -0.228 1.228 32 H -0.258 1.258 33 H 0.156 0.844 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.171 0.829 40 H 0.157 0.843 41 H 0.417 0.583 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.138 0.862 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.125 4.574 3.551 7.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.176 4.176 3 Si 0.581 3.419 4 C -0.156 4.156 5 C -0.038 4.038 6 C -0.146 4.146 7 C 0.349 3.651 8 O -0.404 6.404 9 N -0.375 5.375 10 C 0.039 3.961 11 H 0.114 0.886 12 C -0.166 4.166 13 C -0.148 4.148 14 C -0.067 4.067 15 H 0.119 0.881 16 C 0.138 3.862 17 N -0.256 5.256 18 C 0.018 3.982 19 C -0.317 4.317 20 C 0.318 3.682 21 O -0.415 6.415 22 N -0.266 5.266 23 C -0.134 4.134 24 C -0.167 4.167 25 C -0.078 4.078 26 C -0.171 4.171 27 C 0.099 3.901 28 F -0.099 7.099 29 H 0.229 0.771 30 H 0.140 0.860 31 H -0.152 1.152 32 H -0.183 1.183 33 H 0.174 0.826 34 H 0.235 0.765 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.188 0.812 40 H 0.175 0.825 41 H 0.256 0.744 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.155 0.845 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 3.582 4.834 2.547 6.534 hybrid contribution 1.074 -1.681 -0.277 2.014 sum 4.657 3.154 2.270 6.065 Atomic orbital electron populations 1.86523 1.16574 1.81439 1.49526 1.25007 0.85646 1.10299 0.96614 0.95256 0.81738 0.76483 0.88384 1.20378 0.92786 1.02194 1.00249 1.20977 1.00955 0.90872 0.91022 1.19986 0.94224 1.02255 0.98149 1.18121 0.87331 0.79189 0.80412 1.90831 1.17622 1.62909 1.68992 1.45964 1.14227 1.49561 1.27769 1.21076 0.94980 0.90366 0.89653 0.88621 1.21913 0.99981 0.94535 1.00190 1.21566 1.00598 1.01005 0.91610 1.20565 0.96218 0.95770 0.94126 0.88096 1.23196 0.91922 0.81077 0.90034 1.68291 1.06734 1.37342 1.13221 1.22764 0.93658 0.91121 0.90654 1.22978 1.03756 0.96717 1.08287 1.17359 0.82822 0.87365 0.80656 1.91031 1.72548 1.12710 1.65192 1.44771 1.31872 1.08023 1.41889 1.21366 1.01709 0.91610 0.98701 1.21860 0.99667 1.01382 0.93741 1.21166 0.91908 0.96110 0.98635 1.21096 1.01758 0.99234 0.94981 1.17783 0.87607 0.93115 0.91629 1.91586 1.71038 1.71507 1.75805 0.77051 0.85984 1.15228 1.18325 0.82646 0.76487 0.90421 0.91229 0.91050 0.90069 0.81214 0.82515 0.74382 0.90549 0.89128 0.91082 0.90241 0.84477 0.83607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 0.09 11.64 -35.23 -0.41 -0.32 16 2 C -0.07 0.03 2.96 36.01 0.11 0.14 16 3 Si 0.68 -0.58 30.81 -169.99 -5.24 -5.81 16 4 C -0.15 0.09 5.13 -104.61 -0.54 -0.44 16 5 C -0.02 0.01 8.78 -39.20 -0.34 -0.34 16 6 C -0.14 0.17 5.87 -104.96 -0.62 -0.45 16 7 C 0.56 -0.09 7.73 -12.38 -0.10 -0.18 16 8 O -0.53 -1.93 16.01 5.30 0.08 -1.85 16 9 N -0.72 2.40 5.03 -54.79 -0.28 2.12 16 10 C 0.14 -0.48 2.45 -67.93 -0.17 -0.65 16 11 H 0.10 -0.12 7.58 -51.93 -0.39 -0.51 16 12 C -0.13 0.44 5.49 -26.73 -0.15 0.29 16 13 C -0.11 0.41 5.19 -26.73 -0.14 0.27 16 14 C -0.05 0.21 2.48 -91.76 -0.23 -0.02 16 15 H 0.10 -0.64 8.14 -51.93 -0.42 -1.06 16 16 C 0.40 -0.76 6.73 -155.57 -1.05 -1.81 16 17 N -0.53 0.36 9.11 -10.63 -0.10 0.26 16 18 C 0.16 -0.13 11.20 -17.55 -0.20 -0.32 16 19 C -0.29 -0.27 10.07 -39.26 -0.40 -0.67 16 20 C 0.52 1.48 7.75 -15.10 -0.12 1.37 16 21 O -0.54 -3.82 17.97 4.94 0.09 -3.73 16 22 N -0.63 0.56 5.25 -12.27 -0.06 0.49 16 23 C -0.10 0.42 4.67 -26.73 -0.12 0.30 16 24 C -0.13 0.68 5.39 -26.73 -0.14 0.53 16 25 C -0.06 0.20 9.54 -39.20 -0.37 -0.17 16 26 C -0.15 0.38 10.01 -39.58 -0.40 -0.02 16 27 C 0.12 -0.07 6.67 -39.27 -0.26 -0.33 16 28 F -0.12 -0.11 12.81 2.25 0.03 -0.08 16 29 H 0.38 -1.54 8.44 45.56 0.38 -1.16 16 30 H 0.12 0.00 7.96 -51.93 -0.41 -0.41 16 31 H -0.23 -0.31 5.27 56.52 0.30 -0.01 16 32 H -0.26 -0.63 7.11 56.52 0.40 -0.23 16 33 H 0.16 0.04 6.67 -52.49 -0.35 -0.31 16 34 H 0.40 -2.40 6.63 -40.82 -0.27 -2.67 16 35 H 0.08 -0.08 8.14 -51.93 -0.42 -0.51 16 36 H 0.07 -0.31 8.14 -51.93 -0.42 -0.73 16 37 H 0.07 -0.28 8.14 -51.93 -0.42 -0.71 16 38 H 0.08 -0.20 8.14 -51.93 -0.42 -0.62 16 39 H 0.17 -0.60 8.06 -52.48 -0.42 -1.02 16 40 H 0.16 0.01 8.06 -52.48 -0.42 -0.41 16 41 H 0.42 -1.29 8.78 -40.82 -0.36 -1.64 16 42 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 43 H 0.09 -0.28 7.75 -51.93 -0.40 -0.68 16 44 H 0.07 -0.45 8.14 -51.93 -0.42 -0.88 16 45 H 0.08 -0.41 8.14 -51.93 -0.42 -0.84 16 46 H 0.14 -0.90 6.40 -52.48 -0.34 -1.24 16 47 H 0.15 -0.63 8.06 -52.49 -0.42 -1.05 16 LS Contribution 388.66 15.07 5.86 5.86 Total: 0.00 -11.65 388.66 -11.34 -22.99 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: -6.09 Total: -17.43 kcal Atomic # 6 Polarization: 2.71 SS G_CDS: -5.22 Total: -2.51 kcal Atomic # 7 Polarization: 3.32 SS G_CDS: -0.44 Total: 2.88 kcal Atomic # 8 Polarization: -5.66 SS G_CDS: -0.24 Total: -5.89 kcal Atomic # 9 Polarization: -0.11 SS G_CDS: 0.03 Total: -0.08 kcal Atomic # 14 Polarization: -0.58 SS G_CDS: -5.24 Total: -5.81 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -11.65 -11.34 -22.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12496548.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.145 kcal (2) G-P(sol) polarization free energy of solvation -11.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds