Wall clock time and date at job start Sun Mar 7 2021 03:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39277 * 121.03533 * 2 1 4 4 C 1.46498 * 134.19803 * 0.02562 * 3 2 1 5 5 C 1.50708 * 126.59969 * 359.96087 * 4 3 2 6 6 O 1.42893 * 109.47069 * 285.00204 * 5 4 3 7 7 Si 1.86299 * 109.47317 * 164.99916 * 5 4 3 8 8 C 1.34180 * 106.80594 * 179.97438 * 4 3 2 9 9 N 1.36950 * 109.94457 * 0.02562 * 8 4 3 10 10 C 1.37149 * 110.12094 * 359.97438 * 9 8 4 11 11 N 1.32821 * 132.97062 * 179.97438 * 10 9 8 12 12 C 1.31307 * 121.89009 * 179.97438 * 11 10 9 13 13 C 1.39750 * 121.02733 * 180.02562 * 2 1 3 14 14 C 1.47664 * 120.45425 * 359.95605 * 13 2 1 15 15 O 1.21568 * 120.00430 * 354.00542 * 14 13 2 16 16 N 1.34783 * 119.99749 * 173.99839 * 14 13 2 17 17 C 1.46504 * 119.99922 * 179.97438 * 16 14 13 18 18 H 1.09000 * 109.47079 * 325.00492 * 17 16 14 19 19 C 1.53003 * 109.46859 * 85.00097 * 17 16 14 20 20 C 1.52997 * 109.46958 * 179.97438 * 19 17 16 21 21 C 1.52992 * 109.47399 * 300.00370 * 20 19 17 22 22 H 1.09000 * 109.47150 * 299.99920 * 21 20 19 23 23 C 1.50704 * 109.47333 * 179.97438 * 21 20 19 24 24 N 1.30636 * 119.25667 * 264.72737 * 23 21 20 25 25 C 1.33521 * 121.50717 * 179.76020 * 24 23 21 26 26 C 1.36201 * 119.90918 * 0.50834 * 25 24 23 27 27 C 1.41028 * 118.59006 * 359.75949 * 26 25 24 28 28 O 1.21976 * 120.70610 * 180.02562 * 27 26 25 29 29 N 1.34749 * 119.24850 * 85.00233 * 23 21 20 30 30 C 1.53003 * 109.47368 * 59.99880 * 21 20 19 31 31 C 1.52999 * 109.47113 * 205.00221 * 17 16 14 32 32 H 1.08995 * 109.47280 * 263.68553 * 1 2 3 33 33 H 1.09007 * 109.46968 * 23.67892 * 1 2 3 34 34 H 1.08995 * 109.47214 * 143.67718 * 1 2 3 35 35 H 1.09002 * 109.46779 * 44.99671 * 5 4 3 36 36 H 0.96697 * 114.00001 * 300.00115 * 6 5 4 37 37 H 1.48499 * 109.99674 * 58.67897 * 7 5 4 38 38 H 1.48497 * 109.99905 * 180.02562 * 7 5 4 39 39 H 1.08000 * 125.02760 * 180.02562 * 8 4 3 40 40 H 0.97002 * 124.93638 * 180.25938 * 9 8 4 41 41 H 1.08000 * 119.30769 * 179.97438 * 12 11 10 42 42 H 0.96999 * 119.99973 * 0.02562 * 16 14 13 43 43 H 1.08998 * 109.47104 * 299.99925 * 19 17 16 44 44 H 1.09000 * 109.46952 * 60.00318 * 19 17 16 45 45 H 1.09000 * 109.47352 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.46904 * 60.00441 * 20 19 17 47 47 H 1.07997 * 120.04837 * 180.26714 * 25 24 23 48 48 H 1.07995 * 120.70767 * 179.73120 * 26 25 24 49 49 H 0.96998 * 120.04906 * 359.97438 * 29 23 21 50 50 H 1.09003 * 109.47499 * 180.02562 * 30 21 20 51 51 H 1.09000 * 109.46952 * 59.99919 * 30 21 20 52 52 H 1.08992 * 109.47100 * 299.99919 * 31 17 16 53 53 H 1.08998 * 109.46583 * 60.00314 * 31 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1934 0.0000 4 6 1.8517 2.6100 0.0005 5 6 0.4527 3.1705 0.0003 6 8 -0.1188 3.0244 -1.3012 7 14 0.5070 4.9761 0.4557 8 6 2.9949 3.3125 0.0008 9 7 4.0669 2.4603 0.0000 10 6 3.6348 1.1587 -0.0003 11 7 4.2720 -0.0067 -0.0015 12 6 3.6266 -1.1502 -0.0010 13 6 2.2273 -1.1975 -0.0005 14 6 1.5223 -2.4950 -0.0001 15 8 0.3122 -2.5293 0.1106 16 7 2.2205 -3.6414 -0.1227 17 6 1.5212 -4.9287 -0.1218 18 1 0.6669 -4.8776 0.5533 19 6 1.0344 -5.2456 -1.5372 20 6 0.3046 -6.5903 -1.5364 21 6 1.2604 -7.6891 -1.0678 22 1 2.1147 -7.7398 -1.7429 23 6 0.5413 -9.0135 -1.0663 24 7 0.0006 -9.4452 0.0417 25 6 -0.6510 -10.6096 0.0928 26 6 -0.7533 -11.3802 -1.0256 27 6 -0.1649 -10.9168 -2.2206 28 8 -0.2337 -11.5755 -3.2449 29 7 0.4756 -9.7282 -2.2068 30 6 1.7472 -7.3722 0.3477 31 6 2.4766 -6.0278 0.3471 32 1 -0.3633 -0.1130 1.0214 33 1 -0.3633 0.9412 -0.4128 34 1 -0.3633 -0.8279 -0.6087 35 1 -0.1550 2.6307 0.7266 36 1 0.3712 3.4800 -1.9993 37 1 1.3586 5.7177 -0.5087 38 1 -0.8666 5.5405 0.4597 39 1 3.0599 4.3906 0.0015 40 1 4.9966 2.7371 0.0036 41 1 4.1869 -2.0735 -0.0024 42 1 3.1861 -3.6141 -0.2108 43 1 0.3537 -4.4626 -1.8712 44 1 1.8887 -5.2968 -2.2123 45 1 -0.0419 -6.8164 -2.5449 46 1 -0.5497 -6.5396 -0.8613 47 1 -1.0928 -10.9417 1.0206 48 1 -1.2736 -12.3261 -0.9978 49 1 0.8878 -9.3894 -3.0168 50 1 2.4286 -8.1548 0.6814 51 1 0.8929 -7.3215 1.0228 52 1 3.3308 -6.0790 -0.3279 53 1 2.8233 -5.8020 1.3555 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_12890568.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:15 Heat of formation + Delta-G solvation = 4.475227 kcal Electronic energy + Delta-G solvation = -38370.703764 eV Core-core repulsion = 33402.349858 eV Total energy + Delta-G solvation = -4968.353906 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 410.179 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -42.89488 -42.82472 -41.16110 -39.75085 -38.83583 -38.37047 -37.82499 -35.94564 -35.30004 -34.84279 -32.74662 -31.91582 -31.78150 -31.21323 -29.78843 -28.80866 -26.53116 -25.86260 -25.40003 -24.55929 -23.94054 -23.68091 -22.61962 -21.63870 -20.92010 -20.59575 -19.76302 -19.29813 -19.16353 -18.70620 -17.83847 -17.70881 -17.57634 -17.09872 -17.06156 -16.70756 -16.39688 -16.13722 -15.95886 -15.63942 -15.59923 -15.55841 -15.35057 -15.12282 -14.93951 -14.67981 -14.42315 -14.18531 -14.04793 -14.03320 -13.90028 -13.71256 -13.53511 -13.39052 -13.20952 -13.16008 -13.09846 -12.49801 -12.40690 -12.27758 -12.08361 -12.01401 -11.80335 -11.56984 -11.36480 -11.29750 -11.15194 -11.11374 -11.06842 -10.55154 -10.24855 -10.06561 -9.66123 -9.58568 -9.11424 -4.83576 -0.44682 -0.31254 -0.04652 0.68581 1.36087 1.43745 1.56810 1.63217 1.70406 1.85714 2.05440 2.12179 2.50976 2.79375 2.80005 3.34126 3.43341 3.45986 3.55498 3.58586 3.66038 3.68823 3.73306 3.75201 3.80565 4.01879 4.15726 4.18589 4.20155 4.29244 4.31459 4.33785 4.40562 4.44073 4.51577 4.52938 4.55881 4.63158 4.68878 4.72718 4.79910 4.86977 4.89517 5.02387 5.05480 5.11885 5.18991 5.21999 5.26518 5.30018 5.36042 5.36787 5.39854 5.48043 5.50938 5.62637 5.76082 6.23984 6.56074 6.59942 6.67163 6.71893 6.85891 7.25241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.061 3.939 3 C -0.166 4.166 4 C -0.197 4.197 5 C -0.058 4.058 6 O -0.550 6.550 7 Si 0.778 3.222 8 C 0.089 3.911 9 N -0.560 5.560 10 C 0.288 3.712 11 N -0.517 5.517 12 C 0.181 3.819 13 C -0.241 4.241 14 C 0.570 3.430 15 O -0.565 6.565 16 N -0.709 5.709 17 C 0.145 3.855 18 H 0.069 0.931 19 C -0.121 4.121 20 C -0.103 4.103 21 C -0.040 4.040 22 H 0.132 0.868 23 C 0.409 3.591 24 N -0.544 5.544 25 C 0.173 3.827 26 C -0.319 4.319 27 C 0.509 3.491 28 O -0.593 6.593 29 N -0.615 5.615 30 C -0.092 4.092 31 C -0.118 4.118 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.385 0.615 37 H -0.259 1.259 38 H -0.309 1.309 39 H 0.219 0.781 40 H 0.438 0.562 41 H 0.197 0.803 42 H 0.413 0.587 43 H 0.050 0.950 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.198 0.802 48 H 0.158 0.842 49 H 0.428 0.572 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.095 0.905 53 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 6.705 4.206 11.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.053 3.947 3 C -0.173 4.173 4 C -0.204 4.204 5 C -0.166 4.166 6 O -0.358 6.358 7 Si 0.681 3.319 8 C -0.037 4.037 9 N -0.167 5.167 10 C 0.054 3.946 11 N -0.230 5.230 12 C 0.013 3.987 13 C -0.248 4.248 14 C 0.359 3.641 15 O -0.445 6.445 16 N -0.361 5.361 17 C 0.041 3.959 18 H 0.087 0.913 19 C -0.160 4.160 20 C -0.143 4.143 21 C -0.060 4.060 22 H 0.150 0.850 23 C 0.145 3.855 24 N -0.267 5.267 25 C 0.034 3.966 26 C -0.344 4.344 27 C 0.309 3.691 28 O -0.476 6.476 29 N -0.253 5.253 30 C -0.131 4.131 31 C -0.156 4.156 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.127 0.873 36 H 0.234 0.766 37 H -0.184 1.184 38 H -0.237 1.237 39 H 0.236 0.764 40 H 0.279 0.721 41 H 0.213 0.787 42 H 0.251 0.749 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.082 0.918 47 H 0.215 0.785 48 H 0.176 0.824 49 H 0.269 0.731 50 H 0.100 0.900 51 H 0.093 0.907 52 H 0.114 0.886 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.779 7.099 4.612 11.497 hybrid contribution -0.445 -0.903 -2.392 2.596 sum 7.334 6.196 2.219 9.854 Atomic orbital electron populations 1.21080 0.89579 1.03906 1.03128 1.20062 0.96964 0.90277 0.87430 1.19739 0.93268 0.94345 1.09943 1.20705 0.96034 0.90376 1.13325 1.24721 0.90662 1.13692 0.87538 1.86583 1.55179 1.76597 1.17456 0.94088 0.79208 0.70231 0.88369 1.22313 0.84048 0.97179 1.00204 1.41602 1.10563 1.01790 1.62742 1.18773 0.89500 0.86848 0.99447 1.66519 1.40887 0.96483 1.19114 1.23005 0.89668 0.95313 0.90753 1.20560 0.95480 0.93493 1.15265 1.17964 0.86452 0.84045 0.75685 1.90749 1.15133 1.87468 1.51177 1.45829 1.11358 1.04878 1.74015 1.21059 0.95943 0.81935 0.97003 0.91280 1.21834 1.00967 0.95952 0.97204 1.21486 0.97742 0.92922 1.02105 1.20688 0.97951 0.85339 1.02035 0.85039 1.23742 0.88300 0.92873 0.80567 1.68392 1.16972 1.17403 1.23958 1.23182 0.87638 0.86753 0.99056 1.23002 1.11864 1.06635 0.92859 1.17669 0.79828 0.80732 0.90830 1.90986 1.63193 1.57305 1.36158 1.44639 1.46723 1.19228 1.14684 1.21318 1.01202 0.96824 0.93711 1.21791 0.98107 0.92265 1.03460 0.90540 0.90167 0.90173 0.87292 0.76575 1.18416 1.23688 0.76441 0.72081 0.78655 0.74861 0.93078 0.89243 0.90611 0.91829 0.78512 0.82384 0.73107 0.89976 0.90733 0.88618 0.89901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.46 71.24 0.60 -0.32 16 2 C 0.06 0.40 5.98 -19.25 -0.12 0.29 16 3 C -0.17 -0.74 6.16 -20.19 -0.12 -0.87 16 4 C -0.20 0.16 5.57 -18.63 -0.10 0.05 16 5 C -0.06 0.07 1.88 71.24 0.13 0.21 16 6 O -0.55 -1.13 11.67 -148.98 -1.74 -2.87 16 7 Si 0.78 -4.31 30.83 68.60 2.11 -2.20 16 8 C 0.09 -0.56 10.44 82.97 0.87 0.30 16 9 N -0.56 2.32 6.04 -192.25 -1.16 1.16 16 10 C 0.29 0.84 8.42 134.03 1.13 1.97 16 11 N -0.52 -1.62 10.37 -191.75 -1.99 -3.61 16 12 C 0.18 -0.06 10.67 85.20 0.91 0.85 16 13 C -0.24 -0.86 5.89 -19.99 -0.12 -0.98 16 14 C 0.57 2.02 7.68 86.73 0.67 2.69 16 15 O -0.57 -6.13 13.16 -3.93 -0.05 -6.18 16 16 N -0.71 3.31 5.03 -445.56 -2.24 1.07 16 17 C 0.14 -0.77 2.45 44.99 0.11 -0.66 16 18 H 0.07 0.04 7.58 -2.39 -0.02 0.02 16 19 C -0.12 0.69 5.50 30.59 0.17 0.86 16 20 C -0.10 0.69 5.19 30.59 0.16 0.85 16 21 C -0.04 0.37 2.48 -11.54 -0.03 0.34 16 22 H 0.13 -1.92 8.14 -2.39 -0.02 -1.94 16 23 C 0.41 -1.42 6.73 138.18 0.93 -0.49 16 24 N -0.54 0.52 9.11 -187.56 -1.71 -1.19 16 25 C 0.17 -0.19 11.20 83.96 0.94 0.75 16 26 C -0.32 -1.12 10.07 22.48 0.23 -0.89 16 27 C 0.51 3.93 7.75 84.89 0.66 4.59 16 28 O -0.59 -10.17 17.97 -5.24 -0.09 -10.26 16 29 N -0.62 0.54 5.25 -310.68 -1.63 -1.09 16 30 C -0.09 0.82 4.66 30.58 0.14 0.96 16 31 C -0.12 1.28 5.39 30.58 0.16 1.45 16 32 H 0.08 0.58 8.14 -2.39 -0.02 0.57 16 33 H 0.08 0.59 4.79 -2.38 -0.01 0.58 16 34 H 0.08 0.88 5.96 -2.39 -0.01 0.87 16 35 H 0.11 -0.01 7.13 -2.39 -0.02 -0.03 16 36 H 0.38 -1.64 8.70 -74.06 -0.64 -2.29 16 37 H -0.26 1.36 7.00 99.48 0.70 2.06 16 38 H -0.31 -1.16 7.11 99.48 0.71 -0.45 16 39 H 0.22 -3.07 6.28 -2.91 -0.02 -3.09 16 40 H 0.44 -4.19 8.96 -92.71 -0.83 -5.02 16 41 H 0.20 -1.79 6.43 -2.91 -0.02 -1.81 16 42 H 0.41 -4.56 6.68 -92.71 -0.62 -5.18 16 43 H 0.05 0.02 8.14 -2.39 -0.02 0.00 16 44 H 0.09 -0.85 8.14 -2.39 -0.02 -0.86 16 45 H 0.08 -0.56 8.14 -2.39 -0.02 -0.57 16 46 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 47 H 0.20 -1.46 8.06 -2.91 -0.02 -1.48 16 48 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 49 H 0.43 -2.38 8.78 -92.71 -0.81 -3.19 16 50 H 0.08 -0.76 8.14 -2.39 -0.02 -0.78 16 51 H 0.07 -0.39 7.76 -2.39 -0.02 -0.40 16 52 H 0.10 -1.42 8.14 -2.39 -0.02 -1.44 16 53 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 Total: 0.00 -35.40 424.52 -3.03 -38.42 By element: Atomic # 1 Polarization: -23.35 SS G_CDS: -1.84 Total: -25.19 kcal Atomic # 6 Polarization: 4.62 SS G_CDS: 7.32 Total: 11.93 kcal Atomic # 7 Polarization: 5.07 SS G_CDS: -8.73 Total: -3.66 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -1.88 Total: -19.31 kcal Atomic # 14 Polarization: -4.31 SS G_CDS: 2.11 Total: -2.20 kcal Total: -35.40 -3.03 -38.42 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_12890568.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.900 kcal (2) G-P(sol) polarization free energy of solvation -35.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds