Wall clock time and date at job start Sun Mar 7 2021 03:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86303 * 109.47272 * 2 1 4 4 C 1.50699 * 109.47438 * 119.99830 * 2 1 3 5 5 C 1.38901 * 119.67734 * 244.97809 * 4 2 1 6 6 C 1.36477 * 120.61078 * 179.97438 * 5 4 2 7 7 C 1.40061 * 119.83495 * 0.09211 * 6 5 4 8 8 C 1.41585 * 133.38180 * 179.97438 * 7 6 5 9 9 C 1.35866 * 107.73101 * 179.97438 * 8 7 6 10 10 C 1.47056 * 125.43067 * 180.02562 * 9 8 7 11 11 O 1.21640 * 119.99803 * 0.02562 * 10 9 8 12 12 N 1.34781 * 120.00052 * 180.02562 * 10 9 8 13 13 C 1.46496 * 119.99775 * 179.97438 * 12 10 9 14 14 H 1.08996 * 109.47565 * 34.99894 * 13 12 10 15 15 C 1.52997 * 109.46953 * 154.99854 * 13 12 10 16 16 C 1.53006 * 109.47127 * 179.97438 * 15 13 12 17 17 C 1.52999 * 109.46626 * 299.99539 * 16 15 13 18 18 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 19 19 C 1.50706 * 109.46957 * 180.02562 * 17 16 15 20 20 N 1.30637 * 119.24968 * 335.00073 * 19 17 16 21 21 C 1.33531 * 121.50593 * 179.97438 * 20 19 17 22 22 C 1.36203 * 119.90453 * 0.02562 * 21 20 19 23 23 C 1.41026 * 118.59625 * 0.02562 * 22 21 20 24 24 O 1.21981 * 120.70998 * 180.02562 * 23 22 21 25 25 N 1.34746 * 119.25621 * 154.73028 * 19 17 16 26 26 C 1.52997 * 109.46991 * 60.00378 * 17 16 15 27 27 C 1.52996 * 109.47131 * 299.99311 * 26 17 16 28 28 N 1.38149 * 109.14256 * 0.26005 * 9 8 7 29 29 C 1.37489 * 108.79061 * 359.56643 * 28 9 8 30 30 C 1.37711 * 119.67285 * 64.99481 * 4 2 1 31 31 H 0.96695 * 114.00037 * 59.99572 * 1 2 3 32 32 H 1.09004 * 109.47213 * 239.99901 * 2 1 3 33 33 H 1.48503 * 109.99971 * 298.68146 * 3 2 1 34 34 H 1.48492 * 109.99950 * 59.99974 * 3 2 1 35 35 H 1.07993 * 119.68883 * 359.97438 * 5 4 2 36 36 H 1.08001 * 120.08053 * 180.02562 * 6 5 4 37 37 H 1.08006 * 126.13922 * 359.97438 * 8 7 6 38 38 H 0.97001 * 119.99650 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.47502 * 60.00124 * 15 13 12 40 40 H 1.09001 * 109.47289 * 299.99920 * 15 13 12 41 41 H 1.08993 * 109.46955 * 60.00011 * 16 15 13 42 42 H 1.09000 * 109.47050 * 179.97438 * 16 15 13 43 43 H 1.07998 * 120.04747 * 179.97438 * 21 20 19 44 44 H 1.07995 * 120.70335 * 180.02562 * 22 21 20 45 45 H 0.97001 * 120.04023 * 359.97438 * 25 19 17 46 46 H 1.09001 * 109.47289 * 179.97438 * 26 17 16 47 47 H 1.09000 * 109.47611 * 59.99933 * 26 17 16 48 48 H 1.08996 * 109.47452 * 300.00000 * 27 26 17 49 49 H 1.09000 * 109.47054 * 180.02562 * 27 26 17 50 50 H 0.96998 * 125.60588 * 179.73505 * 28 9 8 51 51 H 1.08004 * 120.09812 * 359.97438 * 30 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.6419 -0.0024 2.1913 6 6 3.1052 -0.6265 3.3131 7 6 2.8654 -1.9938 3.4992 8 6 3.2031 -2.9096 4.5248 9 6 2.7047 -4.1243 4.1755 10 6 2.8321 -5.3575 4.9663 11 8 3.4235 -5.3401 6.0291 12 7 2.2935 -6.5071 4.5136 13 6 2.4209 -7.7358 5.3012 14 1 2.3794 -7.4927 6.3629 15 6 1.2753 -8.6873 4.9507 16 6 1.4087 -9.9708 5.7728 17 6 2.7456 -10.6434 5.4548 18 1 2.7869 -10.8861 4.3931 19 6 2.8768 -11.9079 6.2641 20 7 2.2165 -12.0193 7.3857 21 6 2.2992 -13.1196 8.1379 22 6 3.0866 -14.1570 7.7393 23 6 3.8004 -14.0364 6.5290 24 8 4.5165 -14.9420 6.1352 25 7 3.6683 -12.9002 5.8117 26 6 3.8913 -9.6918 5.8054 27 6 3.7579 -8.4084 4.9833 28 7 2.0637 -4.0174 2.9564 29 6 2.1456 -2.7143 2.5257 30 6 1.6818 -2.0551 1.3909 31 1 -0.3933 0.4417 -0.7650 32 1 1.7923 -0.5139 -0.8900 33 1 1.5879 2.4586 -1.2243 34 1 1.5615 2.4679 1.2084 35 1 2.8293 1.0516 2.0493 36 1 3.6564 -0.0676 4.0550 37 1 3.7574 -2.6833 5.4237 38 1 1.8215 -6.5209 3.6662 39 1 1.3168 -8.9305 3.8889 40 1 0.3227 -8.2080 5.1767 41 1 1.3674 -9.7281 6.8346 42 1 0.5922 -10.6486 5.5234 43 1 1.7433 -13.1864 9.0614 44 1 3.1627 -15.0530 8.3374 45 1 4.1457 -12.7967 4.9736 46 1 4.8438 -10.1710 5.5793 47 1 3.8501 -9.4491 6.8672 48 1 3.7991 -8.6510 3.9215 49 1 4.5743 -7.7306 5.2327 50 1 1.6256 -4.7420 2.4832 51 1 1.1283 -2.5969 0.6382 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13158378.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:25 Heat of formation + Delta-G solvation = -7.449875 kcal Electronic energy + Delta-G solvation = -35110.480041 eV Core-core repulsion = 30362.572554 eV Total energy + Delta-G solvation = -4747.907487 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.168 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.90799 -42.68211 -40.97083 -39.64145 -38.89273 -38.43980 -37.06945 -35.93184 -35.22259 -33.33865 -32.65476 -31.82633 -31.27942 -30.43006 -30.04438 -27.03914 -25.81793 -25.37928 -24.27033 -23.75833 -23.21619 -22.39560 -21.87892 -21.34939 -20.78261 -19.78976 -19.51610 -19.10150 -18.51769 -17.97349 -17.83554 -17.46665 -17.07650 -16.93646 -16.50740 -16.38784 -16.04590 -15.72392 -15.62141 -15.40841 -15.22895 -15.07778 -15.02499 -14.79716 -14.68076 -14.43393 -14.26241 -14.07796 -14.02642 -13.87188 -13.50343 -13.45308 -13.18155 -12.70821 -12.55679 -12.37631 -12.30161 -12.13849 -12.12387 -12.04509 -11.66628 -11.62572 -11.44984 -11.38185 -11.22546 -11.09082 -10.94158 -10.44444 -10.22293 -9.67467 -9.31502 -8.80641 -4.86761 -0.46076 -0.35178 0.53440 0.67323 0.96492 1.34120 1.55209 1.64595 1.76803 1.97913 2.02039 2.20665 2.49610 2.74131 2.77162 3.39671 3.43192 3.53611 3.61155 3.64561 3.70254 3.70507 3.88777 3.95403 4.05929 4.14031 4.16052 4.23227 4.28224 4.31917 4.34198 4.38694 4.44803 4.48728 4.49261 4.51192 4.61994 4.65718 4.81602 4.87873 4.90689 4.98464 5.00704 5.06840 5.15204 5.20343 5.25375 5.32813 5.34604 5.36929 5.41040 5.46592 5.53222 5.56432 5.59489 5.98975 6.29454 6.47582 6.62479 6.66175 6.70293 7.00128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.081 4.081 3 Si 0.761 3.239 4 C -0.053 4.053 5 C -0.151 4.151 6 C -0.060 4.060 7 C -0.136 4.136 8 C -0.121 4.121 9 C 0.013 3.987 10 C 0.587 3.413 11 O -0.558 6.558 12 N -0.707 5.707 13 C 0.142 3.858 14 H 0.071 0.929 15 C -0.118 4.118 16 C -0.092 4.092 17 C -0.040 4.040 18 H 0.132 0.868 19 C 0.409 3.591 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.319 4.319 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.104 4.104 27 C -0.121 4.121 28 N -0.561 5.561 29 C 0.108 3.892 30 C -0.108 4.108 31 H 0.395 0.605 32 H 0.100 0.900 33 H -0.288 1.288 34 H -0.300 1.300 35 H 0.141 0.859 36 H 0.146 0.854 37 H 0.154 0.846 38 H 0.412 0.588 39 H 0.096 0.904 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.198 0.802 44 H 0.158 0.842 45 H 0.429 0.571 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.433 0.567 51 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 2.939 -6.785 7.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.368 6.368 2 C -0.190 4.190 3 Si 0.667 3.333 4 C -0.055 4.055 5 C -0.169 4.169 6 C -0.079 4.079 7 C -0.140 4.140 8 C -0.148 4.148 9 C -0.097 4.097 10 C 0.374 3.626 11 O -0.436 6.436 12 N -0.358 5.358 13 C 0.038 3.962 14 H 0.090 0.910 15 C -0.156 4.156 16 C -0.131 4.131 17 C -0.060 4.060 18 H 0.150 0.850 19 C 0.145 3.855 20 N -0.268 5.268 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.309 3.691 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.143 4.143 27 C -0.159 4.159 28 N -0.168 5.168 29 C -0.003 4.003 30 C -0.129 4.129 31 H 0.245 0.755 32 H 0.118 0.882 33 H -0.215 1.215 34 H -0.228 1.228 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.172 0.828 38 H 0.249 0.751 39 H 0.114 0.886 40 H 0.099 0.901 41 H 0.093 0.907 42 H 0.100 0.900 43 H 0.214 0.786 44 H 0.176 0.824 45 H 0.269 0.731 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.274 0.726 51 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -2.727 3.140 -5.203 6.661 hybrid contribution -0.671 -1.212 -1.210 1.839 sum -3.398 1.928 -6.413 7.510 Atomic orbital electron populations 1.86550 1.18444 1.80657 1.51132 1.24949 0.84071 1.11561 0.98421 0.94035 0.90535 0.72500 0.76181 1.19191 0.97735 0.93031 0.95550 1.20671 1.01356 1.00297 0.94583 1.20594 0.97897 0.91920 0.97476 1.18438 1.04329 0.95003 0.96239 1.21084 1.02849 0.90745 1.00117 1.20026 1.04894 0.95646 0.89126 1.17239 0.78613 0.82466 0.84313 1.90866 1.43688 1.85657 1.23432 1.45825 1.56678 1.07988 1.25308 1.21148 0.96101 0.82920 0.95997 0.91029 1.21799 0.97311 0.94346 1.02127 1.21325 0.94514 0.95714 1.01556 1.20681 0.98591 0.87271 0.99437 0.84984 1.23725 0.82358 0.89205 0.90243 1.68391 1.26051 1.26409 1.05927 1.23177 0.90269 0.85784 0.97435 1.23005 1.06544 1.05325 0.99423 1.17661 0.83290 0.81554 0.86545 1.90990 1.43403 1.40100 1.73068 1.44629 1.40303 1.15444 1.24864 1.21494 0.97170 0.94618 1.01039 1.21834 0.96831 0.95731 1.01550 1.41742 1.48662 1.08771 1.17588 1.18396 1.00797 0.84517 0.96601 1.20006 1.02472 0.94120 0.96267 0.75457 0.88229 1.21493 1.22796 0.84200 0.83581 0.82830 0.75131 0.88563 0.90093 0.90679 0.89966 0.78560 0.82394 0.73074 0.90358 0.91742 0.89052 0.92762 0.72629 0.84329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.09 12.80 -148.98 -1.91 -2.00 16 2 C -0.08 0.20 2.78 71.24 0.20 0.40 16 3 Si 0.76 -2.30 29.82 68.60 2.05 -0.26 16 4 C -0.05 -0.04 5.39 -19.83 -0.11 -0.15 16 5 C -0.15 -0.11 8.59 22.02 0.19 0.08 16 6 C -0.06 -0.10 10.06 22.30 0.22 0.13 16 7 C -0.14 -0.52 6.16 -21.36 -0.13 -0.65 16 8 C -0.12 -0.53 10.53 22.54 0.24 -0.29 16 9 C 0.01 0.02 6.97 39.91 0.28 0.30 16 10 C 0.59 1.18 7.76 86.56 0.67 1.85 16 11 O -0.56 -5.86 16.50 -4.16 -0.07 -5.93 16 12 N -0.71 4.51 5.07 -446.16 -2.26 2.25 16 13 C 0.14 -0.95 2.46 44.99 0.11 -0.84 16 14 H 0.07 -0.06 7.58 -2.39 -0.02 -0.07 16 15 C -0.12 1.41 5.39 30.60 0.16 1.58 16 16 C -0.09 0.92 4.67 30.60 0.14 1.06 16 17 C -0.04 0.41 2.48 -11.54 -0.03 0.38 16 18 H 0.13 -2.10 8.14 -2.39 -0.02 -2.12 16 19 C 0.41 -1.81 6.73 138.18 0.93 -0.88 16 20 N -0.54 0.93 9.11 -187.54 -1.71 -0.78 16 21 C 0.17 -0.30 11.20 83.96 0.94 0.64 16 22 C -0.32 -0.91 10.07 22.48 0.23 -0.69 16 23 C 0.51 3.54 7.75 84.89 0.66 4.20 16 24 O -0.59 -9.71 17.97 -5.25 -0.09 -9.81 16 25 N -0.61 1.12 5.25 -310.68 -1.63 -0.51 16 26 C -0.10 0.84 5.19 30.59 0.16 1.00 16 27 C -0.12 0.90 5.49 30.59 0.17 1.07 16 28 N -0.56 1.81 6.07 -177.18 -1.08 0.73 16 29 C 0.11 0.15 7.25 39.13 0.28 0.43 16 30 C -0.11 -0.04 9.69 22.37 0.22 0.18 16 31 H 0.39 -3.05 8.74 -74.06 -0.65 -3.70 16 32 H 0.10 -0.71 7.96 -2.39 -0.02 -0.73 16 33 H -0.29 -0.31 7.11 99.48 0.71 0.40 16 34 H -0.30 -1.38 7.04 99.48 0.70 -0.68 16 35 H 0.14 -0.36 4.81 -2.91 -0.01 -0.37 16 36 H 0.15 -0.34 8.06 -2.91 -0.02 -0.37 16 37 H 0.15 0.64 8.06 -2.91 -0.02 0.61 16 38 H 0.41 -5.33 7.66 -92.71 -0.71 -6.04 16 39 H 0.10 -1.56 8.14 -2.39 -0.02 -1.58 16 40 H 0.08 -0.92 8.14 -2.39 -0.02 -0.94 16 41 H 0.07 -0.46 7.76 -2.39 -0.02 -0.48 16 42 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 43 H 0.20 -1.55 8.06 -2.91 -0.02 -1.57 16 44 H 0.16 0.28 8.06 -2.91 -0.02 0.25 16 45 H 0.43 -2.83 8.78 -92.71 -0.81 -3.65 16 46 H 0.08 -0.69 8.14 -2.39 -0.02 -0.71 16 47 H 0.06 -0.27 8.14 -2.39 -0.02 -0.29 16 48 H 0.09 -1.05 8.14 -2.39 -0.02 -1.07 16 49 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 50 H 0.43 -4.64 8.12 -92.71 -0.75 -5.39 16 51 H 0.14 -0.43 8.06 -2.91 -0.02 -0.45 16 Total: 0.00 -33.37 420.18 -3.03 -36.40 By element: Atomic # 1 Polarization: -28.03 SS G_CDS: -1.86 Total: -29.89 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: 5.53 Total: 9.79 kcal Atomic # 7 Polarization: 8.37 SS G_CDS: -6.68 Total: 1.69 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -2.07 Total: -17.74 kcal Atomic # 14 Polarization: -2.30 SS G_CDS: 2.05 Total: -0.26 kcal Total: -33.37 -3.03 -36.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13158378.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.954 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds