Wall clock time and date at job start Sun Mar 7 2021 03:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86296 * 109.47026 * 2 1 4 4 C 1.50700 * 109.47338 * 119.99866 * 2 1 3 5 5 C 1.34186 * 126.54239 * 254.97683 * 4 2 1 6 6 N 1.36867 * 109.96604 * 180.02562 * 5 4 2 7 7 C 1.37399 * 109.98368 * 0.02562 * 6 5 4 8 8 C 1.39330 * 133.25256 * 179.97438 * 7 6 5 9 9 C 1.36354 * 120.23669 * 180.02562 * 8 7 6 10 10 C 1.40170 * 120.66835 * 0.02562 * 9 8 7 11 11 C 1.47650 * 119.97230 * 179.97438 * 10 9 8 12 12 O 1.21578 * 120.00007 * 179.97438 * 11 10 9 13 13 N 1.34777 * 119.99891 * 0.02562 * 11 10 9 14 14 C 1.46505 * 119.99797 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.47276 * 325.00066 * 14 13 11 16 16 C 1.53002 * 109.46958 * 84.99979 * 14 13 11 17 17 C 1.52997 * 109.46978 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47164 * 299.99874 * 17 16 14 19 19 H 1.08998 * 109.46505 * 299.99708 * 18 17 16 20 20 C 1.50697 * 109.47239 * 180.02562 * 18 17 16 21 21 N 1.30637 * 119.24910 * 264.72772 * 20 18 17 22 22 C 1.33527 * 121.50526 * 179.76057 * 21 20 18 23 23 C 1.36210 * 119.90488 * 0.50681 * 22 21 20 24 24 C 1.41024 * 118.59434 * 359.75494 * 23 22 21 25 25 O 1.21978 * 120.70797 * 180.02562 * 24 23 22 26 26 N 1.34751 * 119.25623 * 84.99660 * 20 18 17 27 27 C 1.52997 * 109.47127 * 59.99836 * 18 17 16 28 28 C 1.52996 * 109.46998 * 204.99519 * 14 13 11 29 29 C 1.39191 * 120.05320 * 0.24448 * 10 9 8 30 30 C 1.39226 * 119.39389 * 359.50394 * 29 10 9 31 31 H 0.96693 * 113.99910 * 299.99758 * 1 2 3 32 32 H 1.09006 * 109.47529 * 239.99852 * 2 1 3 33 33 H 1.48502 * 110.00239 * 178.68140 * 3 2 1 34 34 H 1.48500 * 110.00256 * 299.99831 * 3 2 1 35 35 H 1.07998 * 125.01397 * 0.04033 * 5 4 2 36 36 H 0.97008 * 125.00515 * 180.02562 * 6 5 4 37 37 H 1.07996 * 119.87616 * 0.02643 * 8 7 6 38 38 H 1.07999 * 119.66336 * 180.02562 * 9 8 7 39 39 H 0.97001 * 120.00457 * 359.97438 * 13 11 10 40 40 H 1.09002 * 109.47097 * 299.99818 * 16 14 13 41 41 H 1.09001 * 109.47142 * 59.99782 * 16 14 13 42 42 H 1.09001 * 109.47375 * 59.99908 * 17 16 14 43 43 H 1.09000 * 109.47140 * 179.97438 * 17 16 14 44 44 H 1.07995 * 120.04792 * 180.26291 * 22 21 20 45 45 H 1.08001 * 120.70281 * 179.73184 * 23 22 21 46 46 H 0.96996 * 120.04209 * 0.02562 * 26 20 18 47 47 H 1.09002 * 109.47153 * 180.02562 * 27 18 17 48 48 H 1.09001 * 109.46832 * 60.00321 * 27 18 17 49 49 H 1.09004 * 109.47368 * 60.00227 * 28 14 13 50 50 H 1.09001 * 109.47372 * 300.00383 * 28 14 13 51 51 H 1.07998 * 120.30187 * 179.74316 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7564 0.0000 4 6 1.9314 -0.7104 1.2305 5 6 2.4612 -0.1387 2.3227 6 7 2.8036 -1.1005 3.2342 7 6 2.4965 -2.3456 2.7408 8 6 2.6362 -3.6352 3.2495 9 6 2.2329 -4.7106 2.5145 10 6 1.6742 -4.5371 1.2407 11 6 1.2433 -5.7125 0.4579 12 8 0.7582 -5.5625 -0.6468 13 7 1.3867 -6.9515 0.9685 14 6 0.9585 -8.1178 0.1920 15 1 0.0701 -7.8633 -0.3858 16 6 2.0817 -8.5381 -0.7581 17 6 1.6344 -9.7557 -1.5695 18 6 1.3109 -10.9107 -0.6196 19 1 2.1993 -11.1656 -0.0418 20 6 0.8708 -12.1102 -1.4188 21 7 -0.4050 -12.3194 -1.6059 22 6 -0.8447 -13.3649 -2.3105 23 6 0.0456 -14.2473 -2.8436 24 6 1.4227 -14.0245 -2.6372 25 8 2.2534 -14.7899 -3.0975 26 7 1.8021 -12.9455 -1.9195 27 6 0.1878 -10.4903 0.3305 28 6 0.6356 -9.2725 1.1422 29 6 1.5306 -3.2580 0.7109 30 6 1.9366 -2.1579 1.4614 31 1 -0.3933 0.4416 0.7650 32 1 1.7924 -0.5139 -0.8900 33 1 3.5345 1.7703 0.0321 34 1 1.5615 2.4679 -1.2085 35 1 2.5971 0.9236 2.4621 36 1 3.2041 -0.9285 4.1009 37 1 3.0654 -3.7834 4.2293 38 1 2.3451 -5.7061 2.9180 39 1 1.7733 -7.0712 1.8500 40 1 2.3119 -7.7155 -1.4351 41 1 2.9703 -8.7926 -0.1803 42 1 0.7460 -9.5008 -2.1474 43 1 2.4344 -10.0549 -2.2467 44 1 -1.9047 -13.5129 -2.4542 45 1 -0.2960 -15.0997 -3.4120 46 1 2.7437 -12.7724 -1.7640 47 1 -0.0424 -11.3130 1.0075 48 1 -0.7006 -10.2355 -0.2474 49 1 -0.1646 -8.9731 1.8192 50 1 1.5241 -9.5270 1.7201 51 1 1.1045 -3.1199 -0.2718 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13287722.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:41 Heat of formation + Delta-G solvation = -12.563484 kcal Electronic energy + Delta-G solvation = -35459.643018 eV Core-core repulsion = 30711.513788 eV Total energy + Delta-G solvation = -4748.129230 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 395.168 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -42.90414 -42.42883 -41.11133 -39.66751 -38.55444 -37.89834 -37.37733 -35.88165 -35.16898 -33.24711 -32.65308 -31.80515 -31.06743 -30.57085 -29.64586 -26.46521 -26.05061 -25.48268 -24.49122 -23.73949 -23.41662 -22.59050 -21.47681 -21.00851 -20.59428 -19.77670 -19.30182 -19.14262 -18.42650 -17.81997 -17.58195 -17.42919 -17.07391 -16.87534 -16.27576 -16.22965 -15.94576 -15.64318 -15.61901 -15.53190 -15.27338 -15.18187 -14.99783 -14.80145 -14.74124 -14.44402 -14.08744 -14.07936 -14.03958 -13.71956 -13.57051 -13.43054 -13.16941 -12.60448 -12.49301 -12.36157 -12.33840 -12.18074 -12.11997 -12.03452 -11.91373 -11.59902 -11.39361 -11.32311 -11.09663 -10.97999 -10.77992 -10.32380 -10.10481 -9.67506 -9.29798 -8.78319 -5.01200 -0.46277 -0.13230 0.23470 0.67214 1.35695 1.54489 1.55287 1.71134 1.88047 2.03338 2.11865 2.16598 2.49509 2.77869 2.91300 3.40992 3.56021 3.62594 3.63695 3.67290 3.72022 3.78871 3.88632 3.94398 3.98867 4.15452 4.16898 4.18814 4.29297 4.36214 4.39266 4.40201 4.46600 4.49524 4.51962 4.57751 4.61921 4.67453 4.80040 4.83672 4.88160 5.01260 5.02893 5.07510 5.16657 5.22873 5.29546 5.32124 5.34621 5.38484 5.43330 5.46823 5.51051 5.59646 5.60181 6.01218 6.56806 6.62760 6.65976 6.70510 6.87979 7.24549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.053 4.053 3 Si 0.811 3.189 4 C -0.229 4.229 5 C 0.087 3.913 6 N -0.572 5.572 7 C 0.109 3.891 8 C -0.125 4.125 9 C -0.066 4.066 10 C -0.179 4.179 11 C 0.560 3.440 12 O -0.590 6.590 13 N -0.706 5.706 14 C 0.142 3.858 15 H 0.062 0.938 16 C -0.120 4.120 17 C -0.104 4.104 18 C -0.039 4.039 19 H 0.134 0.866 20 C 0.409 3.591 21 N -0.545 5.545 22 C 0.173 3.827 23 C -0.318 4.318 24 C 0.509 3.491 25 O -0.593 6.593 26 N -0.615 5.615 27 C -0.092 4.092 28 C -0.116 4.116 29 C -0.027 4.027 30 C -0.130 4.130 31 H 0.393 0.607 32 H 0.082 0.918 33 H -0.279 1.279 34 H -0.308 1.308 35 H 0.220 0.780 36 H 0.439 0.561 37 H 0.163 0.837 38 H 0.164 0.836 39 H 0.416 0.584 40 H 0.046 0.954 41 H 0.093 0.907 42 H 0.060 0.940 43 H 0.077 0.923 44 H 0.198 0.802 45 H 0.159 0.841 46 H 0.429 0.571 47 H 0.084 0.916 48 H 0.072 0.928 49 H 0.081 0.919 50 H 0.099 0.901 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 6.149 14.248 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.162 4.162 3 Si 0.716 3.284 4 C -0.236 4.236 5 C -0.041 4.041 6 N -0.175 5.175 7 C 0.000 4.000 8 C -0.145 4.145 9 C -0.086 4.086 10 C -0.183 4.183 11 C 0.349 3.651 12 O -0.471 6.471 13 N -0.358 5.358 14 C 0.037 3.963 15 H 0.080 0.920 16 C -0.159 4.159 17 C -0.143 4.143 18 C -0.059 4.059 19 H 0.152 0.848 20 C 0.145 3.855 21 N -0.268 5.268 22 C 0.033 3.967 23 C -0.343 4.343 24 C 0.310 3.690 25 O -0.476 6.476 26 N -0.252 5.252 27 C -0.131 4.131 28 C -0.154 4.154 29 C -0.047 4.047 30 C -0.135 4.135 31 H 0.243 0.757 32 H 0.100 0.900 33 H -0.206 1.206 34 H -0.237 1.237 35 H 0.236 0.764 36 H 0.281 0.719 37 H 0.180 0.820 38 H 0.181 0.819 39 H 0.254 0.746 40 H 0.065 0.935 41 H 0.111 0.889 42 H 0.079 0.921 43 H 0.096 0.904 44 H 0.215 0.785 45 H 0.177 0.823 46 H 0.269 0.731 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.100 0.900 50 H 0.117 0.883 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.277 6.418 12.570 14.296 hybrid contribution 1.037 -1.319 -0.893 1.901 sum 3.314 5.099 11.676 13.165 Atomic orbital electron populations 1.86485 1.18152 1.82421 1.50253 1.24742 0.84600 1.11228 0.95602 0.94057 0.76959 0.72452 0.84969 1.20854 1.11873 0.91629 0.99219 1.22226 0.97973 0.95884 0.87988 1.41782 1.53773 1.03162 1.18829 1.18654 0.99786 0.88013 0.93577 1.20093 1.04321 0.87981 1.02155 1.20905 0.95824 1.00339 0.91522 1.19627 1.08903 0.92215 0.97569 1.18469 0.77250 0.84197 0.85151 1.90771 1.46874 1.86867 1.22598 1.45802 1.63790 1.04530 1.21679 1.21076 0.97062 0.84971 0.93175 0.91980 1.21828 0.99127 0.96728 0.98221 1.21490 1.02152 0.93320 0.97335 1.20673 1.01941 0.87965 0.95329 0.84793 1.23712 0.84825 0.89688 0.87266 1.68394 1.12126 1.23467 1.22822 1.23185 1.02345 0.85755 0.85400 1.23008 0.91238 1.07452 1.12583 1.17659 0.91574 0.80674 0.79121 1.90986 1.55979 1.47339 1.53273 1.44630 1.13481 1.22835 1.44288 1.21339 0.96906 0.97739 0.97105 1.21802 1.03732 0.92570 0.97317 1.20594 0.94779 0.91049 0.98275 1.19222 1.05181 0.93579 0.95478 0.75690 0.90005 1.20607 1.23667 0.76380 0.71913 0.81989 0.81851 0.74551 0.93533 0.88859 0.92114 0.90445 0.78533 0.82330 0.73073 0.89722 0.90944 0.90000 0.88298 0.87989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.57 -2.49 12.88 -148.98 -1.92 -4.41 16 2 C -0.05 -0.13 3.06 71.24 0.22 0.09 16 3 Si 0.81 -2.74 30.76 68.60 2.11 -0.63 16 4 C -0.23 -0.30 5.58 -18.61 -0.10 -0.40 16 5 C 0.09 -0.57 10.43 82.98 0.87 0.29 16 6 N -0.57 4.16 6.05 -187.48 -1.13 3.03 16 7 C 0.11 -0.10 7.27 39.19 0.28 0.19 16 8 C -0.13 0.58 10.00 22.09 0.22 0.80 16 9 C -0.07 0.22 9.46 22.30 0.21 0.43 16 10 C -0.18 -0.91 5.87 -20.09 -0.12 -1.03 16 11 C 0.56 4.05 7.73 86.73 0.67 4.72 16 12 O -0.59 -10.16 15.99 -3.96 -0.06 -10.23 16 13 N -0.71 1.63 5.03 -445.59 -2.24 -0.61 16 14 C 0.14 -0.41 2.45 44.99 0.11 -0.30 16 15 H 0.06 0.25 7.58 -2.39 -0.02 0.23 16 16 C -0.12 0.46 5.49 30.59 0.17 0.62 16 17 C -0.10 0.54 5.19 30.60 0.16 0.70 16 18 C -0.04 0.32 2.48 -11.54 -0.03 0.30 16 19 H 0.13 -1.91 8.14 -2.39 -0.02 -1.93 16 20 C 0.41 -1.14 6.73 138.18 0.93 -0.21 16 21 N -0.54 0.08 9.11 -187.55 -1.71 -1.63 16 22 C 0.17 -0.08 11.20 83.96 0.94 0.86 16 23 C -0.32 -1.26 10.07 22.48 0.23 -1.03 16 24 C 0.51 4.12 7.75 84.89 0.66 4.78 16 25 O -0.59 -10.31 17.97 -5.24 -0.09 -10.40 16 26 N -0.61 0.27 5.25 -310.70 -1.63 -1.36 16 27 C -0.09 0.73 4.67 30.61 0.14 0.87 16 28 C -0.12 1.11 5.39 30.61 0.17 1.28 16 29 C -0.03 -0.27 9.64 22.74 0.22 -0.05 16 30 C -0.13 -0.73 6.34 -20.21 -0.13 -0.86 16 31 H 0.39 -2.07 8.70 -74.06 -0.64 -2.71 16 32 H 0.08 0.59 7.96 -2.38 -0.02 0.57 16 33 H -0.28 -0.12 7.11 99.48 0.71 0.58 16 34 H -0.31 -1.72 7.11 99.48 0.71 -1.01 16 35 H 0.22 -3.43 6.35 -2.91 -0.02 -3.45 16 36 H 0.44 -6.39 8.96 -92.70 -0.83 -7.22 16 37 H 0.16 -1.89 8.06 -2.91 -0.02 -1.91 16 38 H 0.16 -1.89 6.36 -2.91 -0.02 -1.91 16 39 H 0.42 -4.04 6.60 -92.71 -0.61 -4.66 16 40 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.09 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.08 -0.48 8.14 -2.39 -0.02 -0.50 16 44 H 0.20 -1.32 8.06 -2.91 -0.02 -1.35 16 45 H 0.16 0.42 8.06 -2.91 -0.02 0.40 16 46 H 0.43 -2.25 8.78 -92.71 -0.81 -3.06 16 47 H 0.08 -0.74 8.14 -2.39 -0.02 -0.76 16 48 H 0.07 -0.27 7.76 -2.39 -0.02 -0.28 16 49 H 0.08 -0.75 8.14 -2.39 -0.02 -0.77 16 50 H 0.10 -1.42 8.14 -2.39 -0.02 -1.44 16 51 H 0.10 1.56 7.64 -2.91 -0.02 1.54 16 Total: 0.00 -41.90 420.08 -2.70 -44.59 By element: Atomic # 1 Polarization: -28.56 SS G_CDS: -1.83 Total: -30.39 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: 5.81 Total: 12.04 kcal Atomic # 7 Polarization: 6.15 SS G_CDS: -6.71 Total: -0.56 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -2.08 Total: -25.04 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.11 Total: -0.63 kcal Total: -41.90 -2.70 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13287722.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.031 kcal (2) G-P(sol) polarization free energy of solvation -41.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds