Wall clock time and date at job start Sun Mar 7 2021 03:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86303 * 109.47154 * 2 1 4 4 C 1.50703 * 109.47281 * 240.00537 * 2 1 3 5 5 C 1.38593 * 120.31939 * 299.97722 * 4 2 1 6 6 C 1.38631 * 118.48295 * 179.76678 * 5 4 2 7 7 C 1.39264 * 119.06212 * 0.47897 * 6 5 4 8 8 C 1.48173 * 119.72172 * 179.79296 * 7 6 5 9 9 O 1.21513 * 120.00017 * 359.71966 * 8 7 6 10 10 N 1.34777 * 120.00085 * 179.72436 * 8 7 6 11 11 C 1.46498 * 119.99828 * 180.27625 * 10 8 7 12 12 H 1.08995 * 109.47013 * 324.72129 * 11 10 8 13 13 C 1.52999 * 109.47257 * 84.72116 * 11 10 8 14 14 C 1.53003 * 109.47010 * 179.97438 * 13 11 10 15 15 C 1.52997 * 109.47127 * 300.00125 * 14 13 11 16 16 H 1.08995 * 109.47275 * 299.99879 * 15 14 13 17 17 C 1.50702 * 109.46928 * 180.02562 * 15 14 13 18 18 N 1.30645 * 119.24999 * 264.72637 * 17 15 14 19 19 C 1.33529 * 121.49799 * 179.76290 * 18 17 15 20 20 C 1.36197 * 119.90908 * 0.50714 * 19 18 17 21 21 C 1.41011 * 118.59782 * 359.75705 * 20 19 18 22 22 O 1.21982 * 120.71154 * 180.02562 * 21 20 19 23 23 N 1.34747 * 119.25356 * 85.00138 * 17 15 14 24 24 C 1.52999 * 109.47278 * 60.00039 * 15 14 13 25 25 C 1.52994 * 109.47024 * 299.99839 * 24 15 14 26 26 N 1.32747 * 120.55916 * 359.50810 * 7 6 5 27 27 C 1.31497 * 121.63938 * 0.26298 * 26 7 6 28 28 H 0.96704 * 113.99890 * 59.99554 * 1 2 3 29 29 H 1.09000 * 109.47196 * 120.00337 * 2 1 3 30 30 H 1.48503 * 109.99653 * 60.00264 * 3 2 1 31 31 H 1.48498 * 110.00020 * 181.31661 * 3 2 1 32 32 H 1.07994 * 120.75543 * 0.02562 * 5 4 2 33 33 H 1.08006 * 120.46768 * 180.26800 * 6 5 4 34 34 H 0.97001 * 119.99727 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47245 * 299.99926 * 13 11 10 36 36 H 1.08995 * 109.47098 * 60.00065 * 13 11 10 37 37 H 1.08996 * 109.47077 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.47062 * 60.00488 * 14 13 11 39 39 H 1.08001 * 120.03893 * 180.26808 * 19 18 17 40 40 H 1.08008 * 120.69487 * 179.73426 * 20 19 18 41 41 H 0.96989 * 120.04514 * 359.95466 * 23 17 15 42 42 H 1.08996 * 109.47245 * 179.97438 * 24 15 14 43 43 H 1.09003 * 109.46809 * 59.99699 * 24 15 14 44 44 H 1.08994 * 109.47599 * 300.00048 * 25 24 15 45 45 H 1.08998 * 109.47530 * 179.97438 * 25 24 15 46 46 H 1.07993 * 119.55103 * 179.97438 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6011 -2.0372 -1.4563 6 6 2.0798 -2.6518 -2.6030 7 6 2.8800 -1.9216 -3.4782 8 6 3.4034 -2.5654 -4.7058 9 8 3.1382 -3.7273 -4.9429 10 7 4.1737 -1.8623 -5.5595 11 6 4.6862 -2.4971 -6.7763 12 1 4.9141 -3.5431 -6.5719 13 6 3.6300 -2.4114 -7.8799 14 6 4.1655 -3.0738 -9.1509 15 6 5.4368 -2.3535 -9.6046 16 1 5.2086 -1.3075 -9.8086 17 6 5.9639 -3.0056 -10.8568 18 7 6.8920 -3.9199 -10.7583 19 6 7.3877 -4.5299 -11.8377 20 6 6.9322 -4.1943 -13.0766 21 6 5.9343 -3.2038 -13.1834 22 8 5.4982 -2.8738 -14.2738 23 7 5.4713 -2.6286 -12.0529 24 6 6.4930 -2.4392 -8.5009 25 6 5.9575 -1.7768 -7.2301 26 7 3.1731 -0.6519 -3.2247 27 6 2.7286 -0.0431 -2.1473 28 1 -0.3933 0.4418 -0.7650 29 1 1.7924 -0.5139 0.8899 30 1 1.5615 2.4678 1.2086 31 1 3.5346 1.7703 -0.0321 32 1 0.9813 -2.5787 -0.7571 33 1 1.8385 -3.6834 -2.8129 34 1 4.3851 -0.9346 -5.3704 35 1 2.7242 -2.9241 -7.5565 36 1 3.4021 -1.3653 -8.0842 37 1 3.4129 -3.0132 -9.9369 38 1 4.3937 -4.1200 -8.9468 39 1 8.1516 -5.2855 -11.7286 40 1 7.3273 -4.6766 -13.9586 41 1 4.7848 -1.9452 -12.1018 42 1 7.3988 -1.9265 -8.8243 43 1 6.7212 -3.4854 -8.2969 44 1 5.7293 -0.7307 -7.4340 45 1 6.7097 -1.8382 -6.4436 46 1 2.9882 0.9907 -1.9743 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13287726.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:45 Heat of formation + Delta-G solvation = -31.716534 kcal Electronic energy + Delta-G solvation = -30502.861145 eV Core-core repulsion = 26165.891276 eV Total energy + Delta-G solvation = -4336.969869 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.88713 -41.89385 -40.67935 -39.52767 -38.48004 -37.83869 -35.89171 -35.19747 -33.82291 -33.01227 -32.40053 -31.78707 -30.20167 -27.77004 -25.84526 -25.36775 -24.97465 -23.88552 -23.69941 -22.62727 -21.62875 -20.97059 -19.76509 -19.31208 -18.99090 -18.57339 -17.85599 -17.75579 -17.07167 -16.91492 -16.66580 -16.51209 -16.17788 -16.01004 -15.87513 -15.61653 -15.40137 -15.16598 -15.05537 -14.50736 -14.42089 -14.33945 -14.25191 -14.05662 -13.94748 -13.50757 -13.41582 -13.14842 -12.53808 -12.52540 -12.34296 -12.15092 -12.10793 -12.02431 -11.60056 -11.45432 -11.35507 -11.25574 -11.07493 -11.05011 -10.65536 -10.57974 -10.29454 -10.02109 -9.65814 -4.98935 -0.57666 -0.44409 0.09192 0.68973 1.26422 1.56875 1.57145 1.65602 1.98357 1.99720 2.51307 2.69011 2.78423 2.97650 3.42588 3.44088 3.52757 3.57939 3.65391 3.71681 3.72915 3.81168 3.97337 3.99083 4.14463 4.17052 4.19404 4.30339 4.36647 4.41387 4.42552 4.51126 4.53823 4.59167 4.67204 4.83059 4.88365 4.90278 5.00302 5.03471 5.08880 5.18286 5.23417 5.32206 5.36348 5.38775 5.41759 5.48540 5.56782 6.32072 6.64481 6.67831 6.72114 6.72740 7.10225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.071 4.071 3 Si 0.776 3.224 4 C -0.143 4.143 5 C -0.055 4.055 6 C -0.118 4.118 7 C 0.064 3.936 8 C 0.569 3.431 9 O -0.567 6.567 10 N -0.694 5.694 11 C 0.140 3.860 12 H 0.070 0.930 13 C -0.120 4.120 14 C -0.103 4.103 15 C -0.040 4.040 16 H 0.132 0.868 17 C 0.410 3.590 18 N -0.545 5.545 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.091 4.091 25 C -0.118 4.118 26 N -0.456 5.456 27 C 0.102 3.898 28 H 0.397 0.603 29 H 0.118 0.882 30 H -0.298 1.298 31 H -0.276 1.276 32 H 0.158 0.842 33 H 0.147 0.853 34 H 0.420 0.580 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.198 0.802 40 H 0.158 0.842 41 H 0.429 0.571 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.310 5.843 4.821 7.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.181 4.181 3 Si 0.681 3.319 4 C -0.146 4.146 5 C -0.080 4.080 6 C -0.139 4.139 7 C -0.074 4.074 8 C 0.354 3.646 9 O -0.445 6.445 10 N -0.345 5.345 11 C 0.036 3.964 12 H 0.089 0.911 13 C -0.159 4.159 14 C -0.142 4.142 15 C -0.060 4.060 16 H 0.150 0.850 17 C 0.146 3.854 18 N -0.268 5.268 19 C 0.034 3.966 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.476 6.476 23 N -0.252 5.252 24 C -0.130 4.130 25 C -0.156 4.156 26 N -0.167 5.167 27 C -0.058 4.058 28 H 0.248 0.752 29 H 0.135 0.865 30 H -0.226 1.226 31 H -0.203 1.203 32 H 0.175 0.825 33 H 0.165 0.835 34 H 0.258 0.742 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.214 0.786 40 H 0.176 0.824 41 H 0.269 0.731 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.112 0.888 45 H 0.097 0.903 46 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 1.496 5.478 4.895 7.497 hybrid contribution -1.000 -0.665 -0.091 1.205 sum 0.495 4.813 4.804 6.818 Atomic orbital electron populations 1.86511 1.16736 1.82110 1.50608 1.25183 0.85599 1.11065 0.96256 0.93769 0.78153 0.74436 0.85504 1.21763 0.98588 0.95734 0.98478 1.21709 0.96335 0.94056 0.95938 1.22276 0.95683 1.02061 0.93839 1.21131 0.98749 0.91342 0.96132 1.18063 0.78591 0.85284 0.82647 1.90797 1.59878 1.17694 1.76157 1.45863 1.50036 1.16578 1.21979 1.21176 0.94199 0.97952 0.83118 0.91129 1.21825 0.97848 1.02489 0.93696 1.21490 0.95117 0.99878 0.97725 1.20677 0.96489 1.00771 0.88086 0.84980 1.23705 0.86635 0.88238 0.86854 1.68400 1.14086 1.12020 1.32263 1.23177 0.93730 0.93315 0.86426 1.22998 1.04401 1.04936 1.01992 1.17654 0.84314 0.83774 0.83271 1.90989 1.62855 1.66686 1.27093 1.44625 1.36710 1.36636 1.07230 1.21316 0.96767 1.02917 0.91968 1.21785 0.95198 1.00761 0.97828 1.67515 1.20506 1.08591 1.20090 1.23027 0.93522 1.00604 0.88667 0.75228 0.86474 1.22597 1.20282 0.82470 0.83548 0.74177 0.92805 0.89184 0.90265 0.91709 0.78552 0.82394 0.73057 0.89947 0.90648 0.88760 0.90283 0.79594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.63 12.78 -148.98 -1.90 0.73 16 2 C -0.07 0.42 2.83 71.24 0.20 0.62 16 3 Si 0.78 -5.74 29.82 68.60 2.05 -3.70 16 4 C -0.14 0.64 5.40 -19.69 -0.11 0.53 16 5 C -0.05 0.13 9.76 22.45 0.22 0.35 16 6 C -0.12 -0.12 9.63 22.61 0.22 0.10 16 7 C 0.06 0.13 6.75 41.89 0.28 0.41 16 8 C 0.57 2.33 7.77 86.88 0.68 3.00 16 9 O -0.57 -6.21 15.99 -3.76 -0.06 -6.27 16 10 N -0.69 1.63 5.07 -445.10 -2.26 -0.62 16 11 C 0.14 -0.60 2.45 44.99 0.11 -0.49 16 12 H 0.07 0.07 7.58 -2.39 -0.02 0.05 16 13 C -0.12 0.69 5.49 30.60 0.17 0.85 16 14 C -0.10 0.73 5.19 30.59 0.16 0.89 16 15 C -0.04 0.37 2.48 -11.54 -0.03 0.35 16 16 H 0.13 -1.94 8.14 -2.39 -0.02 -1.96 16 17 C 0.41 -1.57 6.73 138.18 0.93 -0.64 16 18 N -0.54 0.67 9.11 -187.55 -1.71 -1.04 16 19 C 0.17 -0.24 11.20 83.96 0.94 0.70 16 20 C -0.32 -1.01 10.07 22.47 0.23 -0.78 16 21 C 0.51 3.71 7.75 84.88 0.66 4.37 16 22 O -0.59 -9.92 17.97 -5.26 -0.09 -10.01 16 23 N -0.61 0.83 5.25 -310.69 -1.63 -0.80 16 24 C -0.09 0.78 4.67 30.59 0.14 0.92 16 25 C -0.12 1.12 5.39 30.59 0.16 1.28 16 26 N -0.46 0.45 9.54 -184.91 -1.76 -1.32 16 27 C 0.10 -0.46 9.84 84.83 0.83 0.37 16 28 H 0.40 -5.04 8.70 -74.05 -0.64 -5.68 16 29 H 0.12 -0.61 7.96 -2.39 -0.02 -0.62 16 30 H -0.30 -0.30 7.11 99.48 0.71 0.41 16 31 H -0.28 0.91 7.11 99.48 0.71 1.62 16 32 H 0.16 -0.77 8.06 -2.91 -0.02 -0.79 16 33 H 0.15 0.22 7.64 -2.91 -0.02 0.20 16 34 H 0.42 -2.51 7.93 -92.71 -0.74 -3.25 16 35 H 0.05 -0.01 8.14 -2.39 -0.02 -0.03 16 36 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 37 H 0.08 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 39 H 0.20 -1.50 8.06 -2.91 -0.02 -1.52 16 40 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 41 H 0.43 -2.62 8.78 -92.72 -0.81 -3.44 16 42 H 0.08 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H 0.07 -0.38 7.76 -2.39 -0.02 -0.40 16 44 H 0.09 -1.24 8.14 -2.39 -0.02 -1.25 16 45 H 0.08 -0.68 8.14 -2.39 -0.02 -0.70 16 46 H 0.19 -1.87 4.89 -2.91 -0.01 -1.89 16 Total: 0.00 -28.98 383.71 -2.67 -31.66 By element: Atomic # 1 Polarization: -20.39 SS G_CDS: -1.10 Total: -21.49 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.80 Total: 12.86 kcal Atomic # 7 Polarization: 3.58 SS G_CDS: -7.36 Total: -3.78 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -2.06 Total: -15.55 kcal Atomic # 14 Polarization: -5.74 SS G_CDS: 2.05 Total: -3.70 kcal Total: -28.98 -2.67 -31.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13287726.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.061 kcal (2) G-P(sol) polarization free energy of solvation -28.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds