Wall clock time and date at job start Sun Mar 7 2021 03:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34660 * 124.85355 * 2 1 4 4 C 1.36770 * 108.39445 * 179.97438 * 3 2 1 5 5 C 1.47264 * 126.93883 * 179.97438 * 4 3 2 6 6 O 1.21624 * 119.99957 * 179.75127 * 5 4 3 7 7 N 1.34784 * 120.00042 * 0.02562 * 5 4 3 8 8 C 1.46499 * 119.99893 * 179.72668 * 7 5 4 9 9 H 1.08990 * 109.47400 * 34.99963 * 8 7 5 10 10 C 1.52997 * 109.46833 * 155.00334 * 8 7 5 11 11 C 1.53000 * 109.47104 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47085 * 299.99889 * 11 10 8 13 13 H 1.09007 * 109.46938 * 299.99813 * 12 11 10 14 14 C 1.50699 * 109.47266 * 180.02562 * 12 11 10 15 15 N 1.30635 * 119.25236 * 334.72244 * 14 12 11 16 16 C 1.33522 * 121.50261 * 179.76353 * 15 14 12 17 17 C 1.36199 * 119.91408 * 0.50803 * 16 15 14 18 18 C 1.41025 * 118.58735 * 359.75727 * 17 16 15 19 19 O 1.21983 * 120.70626 * 179.97438 * 18 17 16 20 20 N 1.34747 * 119.25331 * 154.99952 * 14 12 11 21 21 C 1.53000 * 109.47269 * 59.99579 * 12 11 10 22 22 C 1.52998 * 109.46843 * 274.99901 * 8 7 5 23 23 C 1.46686 * 106.11905 * 0.22395 * 4 3 2 24 24 C 1.34487 * 106.33149 * 359.62625 * 23 4 3 25 25 C 1.50701 * 125.57203 * 180.12852 * 24 23 4 26 26 O 1.42895 * 109.47328 * 150.29250 * 25 24 23 27 27 Si 1.86302 * 109.47056 * 30.28621 * 25 24 23 28 28 H 1.08998 * 109.47602 * 90.02494 * 1 2 3 29 29 H 1.09001 * 109.47243 * 210.02716 * 1 2 3 30 30 H 1.09002 * 109.47345 * 330.02787 * 1 2 3 31 31 H 1.07998 * 125.80160 * 0.02915 * 3 2 1 32 32 H 0.97005 * 119.99846 * 359.72456 * 7 5 4 33 33 H 1.09002 * 109.46979 * 299.99327 * 10 8 7 34 34 H 1.08995 * 109.47843 * 59.99844 * 10 8 7 35 35 H 1.08997 * 109.47552 * 59.99439 * 11 10 8 36 36 H 1.09005 * 109.47655 * 179.97438 * 11 10 8 37 37 H 1.07998 * 120.04372 * 180.26660 * 16 15 14 38 38 H 1.07991 * 120.70869 * 179.72921 * 17 16 15 39 39 H 0.97005 * 120.04428 * 359.97438 * 20 14 12 40 40 H 1.09002 * 109.46537 * 60.00437 * 21 12 11 41 41 H 1.09002 * 109.47190 * 180.02562 * 21 12 11 42 42 H 1.09007 * 109.47248 * 300.00110 * 22 8 7 43 43 H 1.08997 * 109.47450 * 60.00399 * 22 8 7 44 44 H 1.07994 * 126.83206 * 179.77295 * 23 4 3 45 45 H 1.09006 * 109.46508 * 270.29244 * 25 24 23 46 46 H 0.96694 * 113.99943 * 179.97438 * 26 25 24 47 47 H 1.48497 * 110.00058 * 298.68576 * 27 25 24 48 48 H 1.48502 * 109.99444 * 60.00364 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1050 0.0000 4 6 3.5462 0.7175 0.0006 5 6 4.7284 1.5956 0.0003 6 8 5.8446 1.1126 0.0054 7 7 4.5734 2.9345 -0.0002 8 6 5.7495 3.8080 0.0056 9 1 6.5459 3.3490 -0.5802 10 6 5.3823 5.1617 -0.6054 11 6 6.6103 6.0742 -0.5989 12 6 7.0874 6.2770 0.8407 13 1 6.2907 6.7358 1.4262 14 6 8.2966 7.1763 0.8472 15 7 9.0500 7.2408 -0.2181 16 6 10.1290 8.0259 -0.2631 17 6 10.4700 8.7745 0.8224 18 6 9.6599 8.7009 1.9744 19 8 9.9297 9.3543 2.9685 20 7 8.5795 7.8913 1.9537 21 6 7.4546 4.9232 1.4517 22 6 6.2271 4.0108 1.4449 23 6 3.5375 -0.7493 -0.0046 24 6 2.2447 -1.1198 0.0007 25 6 1.7396 -2.5397 0.0009 26 8 0.4805 -2.5973 0.6741 27 14 2.9645 -3.6343 0.8798 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3634 -0.8897 0.5143 30 1 -0.3634 0.8902 0.5134 31 1 1.8768 2.1240 0.0004 32 1 3.6832 3.3197 -0.0043 33 1 5.0421 5.0172 -1.6309 34 1 4.5859 5.6208 -0.0197 35 1 7.4071 5.6155 -1.1843 36 1 6.3489 7.0386 -1.0346 37 1 10.7328 8.0644 -1.1577 38 1 11.3425 9.4106 0.8016 39 1 8.0077 7.8245 2.7345 40 1 8.2513 4.4645 0.8662 41 1 7.7940 5.0676 2.4775 42 1 5.4306 4.4698 2.0307 43 1 6.4887 3.0464 1.8802 44 1 4.3980 -1.4018 -0.0090 45 1 1.6183 -2.8823 -1.0267 46 1 0.0950 -3.4833 0.7121 47 1 4.2691 -3.6079 0.1711 48 1 3.1388 -3.1775 2.2821 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_13456076_13287730.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:50 Heat of formation + Delta-G solvation = -14.103384 kcal Electronic energy + Delta-G solvation = -31338.513616 eV Core-core repulsion = 26974.996032 eV Total energy + Delta-G solvation = -4363.517584 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.83728 -42.46676 -40.74545 -39.34448 -38.29876 -37.86325 -35.78760 -35.03655 -33.83344 -32.61568 -31.99815 -31.55628 -30.06126 -27.66727 -26.40407 -25.72203 -25.27077 -23.88272 -23.74046 -22.39465 -21.31756 -20.86542 -20.20634 -19.72320 -19.08936 -18.63804 -18.48849 -17.78059 -17.13559 -17.01619 -16.86794 -16.66916 -16.05911 -15.84049 -15.71728 -15.55875 -15.50098 -15.32752 -15.09961 -14.91177 -14.58193 -14.39002 -14.04876 -14.02304 -13.68788 -13.55993 -13.46174 -13.36878 -13.21948 -13.13696 -12.67483 -12.57862 -12.42525 -12.29327 -12.02189 -11.89021 -11.72921 -11.42260 -11.17842 -11.08516 -10.79292 -10.71308 -10.01486 -9.59616 -9.54000 -9.22226 -5.04007 -0.44537 0.74285 0.81066 0.99590 1.39679 1.58550 1.67961 1.88515 2.06581 2.23685 2.57400 2.66501 2.71025 2.99157 3.28932 3.47184 3.55436 3.56921 3.63658 3.75774 3.80263 3.84750 4.01916 4.02563 4.16500 4.18288 4.20409 4.24230 4.26151 4.30757 4.33227 4.40365 4.49879 4.54445 4.64223 4.67638 4.83845 4.88168 4.89823 4.92646 4.94723 4.98898 5.08353 5.17682 5.28408 5.43556 5.45498 5.54680 5.66270 5.95391 6.11847 6.36251 6.63922 6.72345 6.81967 7.45002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.420 5.420 3 C 0.051 3.949 4 C -0.227 4.227 5 C 0.593 3.407 6 O -0.541 6.541 7 N -0.729 5.729 8 C 0.145 3.855 9 H 0.093 0.907 10 C -0.128 4.128 11 C -0.095 4.095 12 C -0.046 4.046 13 H 0.101 0.899 14 C 0.404 3.596 15 N -0.533 5.533 16 C 0.157 3.843 17 C -0.294 4.294 18 C 0.520 3.480 19 O -0.538 6.538 20 N -0.627 5.627 21 C -0.108 4.108 22 C -0.127 4.127 23 C -0.145 4.145 24 C 0.027 3.973 25 C -0.046 4.046 26 O -0.552 6.552 27 Si 0.708 3.292 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.172 0.828 32 H 0.396 0.604 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.417 0.583 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.149 0.851 45 H 0.080 0.920 46 H 0.387 0.613 47 H -0.252 1.252 48 H -0.252 1.252 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.642 -4.149 -3.091 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.094 5.094 3 C -0.086 4.086 4 C -0.237 4.237 5 C 0.382 3.618 6 O -0.418 6.418 7 N -0.380 5.380 8 C 0.041 3.959 9 H 0.111 0.889 10 C -0.166 4.166 11 C -0.134 4.134 12 C -0.066 4.066 13 H 0.119 0.881 14 C 0.139 3.861 15 N -0.256 5.256 16 C 0.018 3.982 17 C -0.318 4.318 18 C 0.318 3.682 19 O -0.416 6.416 20 N -0.265 5.265 21 C -0.148 4.148 22 C -0.166 4.166 23 C -0.169 4.169 24 C -0.082 4.082 25 C -0.156 4.156 26 O -0.360 6.360 27 Si 0.607 3.393 28 H 0.091 0.909 29 H 0.136 0.864 30 H 0.099 0.901 31 H 0.189 0.811 32 H 0.230 0.770 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.188 0.812 38 H 0.175 0.825 39 H 0.256 0.744 40 H 0.099 0.901 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.095 0.905 44 H 0.167 0.833 45 H 0.098 0.902 46 H 0.237 0.763 47 H -0.176 1.176 48 H -0.177 1.177 Dipole moment (debyes) X Y Z Total from point charges -8.043 -3.835 -2.845 9.354 hybrid contribution -0.571 1.440 0.663 1.685 sum -8.614 -2.394 -2.182 9.203 Atomic orbital electron populations 1.22518 0.75980 1.06172 1.03805 1.43492 1.07278 1.04719 1.53919 1.21939 0.90074 0.91872 1.04678 1.20259 0.91679 0.93594 1.18211 1.17356 0.87968 0.81320 0.75177 1.90788 1.25796 1.75178 1.50067 1.45872 1.09544 1.05696 1.76877 1.20993 0.88602 0.89871 0.96453 0.88875 1.21850 0.98442 0.94235 1.02031 1.21366 0.97857 1.00513 0.93641 1.20563 0.91256 0.94058 1.00764 0.88134 1.23216 0.94112 0.87231 0.81579 1.68299 1.08506 1.25026 1.23770 1.22765 0.90438 0.87061 0.97905 1.22969 1.05575 1.09133 0.94146 1.17361 0.80699 0.79963 0.90160 1.91027 1.71004 1.44362 1.35175 1.44774 1.26984 1.38022 1.16761 1.21558 0.99208 0.92719 1.01267 1.21903 0.97175 1.00376 0.97119 1.21598 0.94592 0.93541 1.07212 1.19777 0.90129 0.87196 1.11119 1.24414 0.93785 0.95824 1.01538 1.86289 1.34929 1.35369 1.79384 0.95643 0.78245 0.85615 0.79812 0.90930 0.86377 0.90131 0.81060 0.76956 0.90374 0.91199 0.89187 0.90654 0.81238 0.82533 0.74379 0.90133 0.91140 0.91361 0.90479 0.83310 0.90249 0.76335 1.17624 1.17660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.13 10.71 59.84 0.64 0.51 16 2 N -0.42 -0.25 3.09 -119.90 -0.37 -0.62 16 3 C 0.05 0.00 10.83 -16.84 -0.18 -0.18 16 4 C -0.23 -0.68 6.29 -103.35 -0.65 -1.33 16 5 C 0.59 2.14 7.77 -12.59 -0.10 2.04 16 6 O -0.54 -4.17 16.63 5.26 0.09 -4.08 16 7 N -0.73 0.38 5.07 -54.94 -0.28 0.11 16 8 C 0.15 -0.16 2.46 -67.93 -0.17 -0.33 16 9 H 0.09 0.12 7.58 -51.93 -0.39 -0.27 16 10 C -0.13 0.45 5.39 -26.73 -0.14 0.30 16 11 C -0.10 0.29 4.67 -26.73 -0.12 0.16 16 12 C -0.05 0.15 2.48 -91.77 -0.23 -0.08 16 13 H 0.10 -0.51 8.14 -51.92 -0.42 -0.94 16 14 C 0.40 -0.36 6.73 -155.57 -1.05 -1.41 16 15 N -0.53 -0.15 9.12 -10.64 -0.10 -0.25 16 16 C 0.16 0.00 11.20 -17.55 -0.20 -0.20 16 17 C -0.29 -0.48 10.07 -39.26 -0.40 -0.88 16 18 C 0.52 1.85 7.75 -15.09 -0.12 1.73 16 19 O -0.54 -4.16 17.97 4.93 0.09 -4.07 16 20 N -0.63 0.04 5.25 -12.27 -0.06 -0.03 16 21 C -0.11 0.25 5.19 -26.76 -0.14 0.11 16 22 C -0.13 0.19 5.49 -26.76 -0.15 0.04 16 23 C -0.15 -0.57 9.50 -37.50 -0.36 -0.93 16 24 C 0.03 0.05 6.17 -81.86 -0.50 -0.45 16 25 C -0.05 0.05 2.97 36.01 0.11 0.16 16 26 O -0.55 1.42 9.69 -35.23 -0.34 1.08 16 27 Si 0.71 -0.91 31.24 -169.99 -5.31 -6.22 16 28 H 0.07 -0.23 8.14 -51.93 -0.42 -0.65 16 29 H 0.12 -0.23 5.13 -51.93 -0.27 -0.49 16 30 H 0.08 -0.32 8.13 -51.93 -0.42 -0.74 16 31 H 0.17 -0.68 7.45 -52.49 -0.39 -1.07 16 32 H 0.40 -1.36 7.55 -40.82 -0.31 -1.67 16 33 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 34 H 0.07 -0.33 8.14 -51.93 -0.42 -0.76 16 35 H 0.09 -0.15 7.76 -51.93 -0.40 -0.55 16 36 H 0.07 -0.22 8.14 -51.93 -0.42 -0.65 16 37 H 0.17 -0.47 8.06 -52.49 -0.42 -0.89 16 38 H 0.16 0.11 8.06 -52.49 -0.42 -0.32 16 39 H 0.42 -0.94 8.78 -40.82 -0.36 -1.30 16 40 H 0.08 -0.07 8.14 -51.93 -0.42 -0.50 16 41 H 0.07 -0.19 8.14 -51.93 -0.42 -0.61 16 42 H 0.07 -0.18 8.14 -51.92 -0.42 -0.60 16 43 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 44 H 0.15 0.68 6.75 -52.49 -0.35 0.32 16 45 H 0.08 -0.21 7.96 -51.93 -0.41 -0.63 16 46 H 0.39 -2.85 8.74 45.56 0.40 -2.45 16 47 H -0.25 -0.44 6.89 56.52 0.39 -0.05 16 48 H -0.25 -0.70 7.11 56.52 0.40 -0.29 16 LS Contribution 392.93 15.07 5.92 5.92 Total: 0.00 -14.12 392.93 -10.88 -25.00 By element: Atomic # 1 Polarization: -9.35 SS G_CDS: -6.77 Total: -16.12 kcal Atomic # 6 Polarization: 3.03 SS G_CDS: -3.75 Total: -0.71 kcal Atomic # 7 Polarization: 0.01 SS G_CDS: -0.81 Total: -0.80 kcal Atomic # 8 Polarization: -6.91 SS G_CDS: -0.17 Total: -7.07 kcal Atomic # 14 Polarization: -0.91 SS G_CDS: -5.31 Total: -6.22 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -14.12 -10.88 -25.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13287730.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.897 kcal (2) G-P(sol) polarization free energy of solvation -14.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds