Wall clock time and date at job start Sun Mar 7 2021 03:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38970 * 119.95375 * 2 1 4 4 O 1.35710 * 119.91715 * 0.04483 * 3 2 1 5 5 C 1.39027 * 120.17557 * 180.02562 * 3 2 1 6 6 C 1.50694 * 119.95700 * 180.02562 * 5 3 2 7 7 O 1.42901 * 109.46997 * 75.00128 * 6 5 3 8 8 Si 1.86298 * 109.47413 * 195.00594 * 6 5 3 9 9 C 1.37686 * 120.08656 * 0.02819 * 5 3 2 10 10 C 1.39756 * 119.90962 * 359.94886 * 9 5 3 11 11 C 1.47600 * 120.08262 * 180.02562 * 10 9 5 12 12 O 1.21588 * 120.00353 * 359.97438 * 11 10 9 13 13 N 1.34784 * 119.99811 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99867 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47129 * 34.99704 * 14 13 11 16 16 C 1.53000 * 109.46680 * 154.99709 * 14 13 11 17 17 C 1.53000 * 109.46803 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47071 * 299.99719 * 17 16 14 19 19 H 1.09003 * 109.47053 * 300.00548 * 18 17 16 20 20 C 1.50700 * 109.47500 * 180.02562 * 18 17 16 21 21 N 1.30642 * 119.24757 * 335.00072 * 20 18 17 22 22 C 1.33529 * 121.49945 * 179.97438 * 21 20 18 23 23 C 1.36194 * 119.91143 * 359.97438 * 22 21 20 24 24 C 1.41027 * 118.59337 * 0.02562 * 23 22 21 25 25 O 1.21982 * 120.70898 * 180.02562 * 24 23 22 26 26 N 1.34748 * 119.25628 * 154.72638 * 20 18 17 27 27 C 1.53003 * 109.46903 * 60.00122 * 18 17 16 28 28 C 1.53000 * 109.47157 * 299.99826 * 27 18 17 29 29 C 1.37725 * 119.95505 * 180.02562 * 2 1 3 30 30 H 1.08990 * 109.47224 * 269.97376 * 1 2 3 31 31 H 1.09000 * 109.47069 * 29.97903 * 1 2 3 32 32 H 1.09010 * 109.46706 * 149.97622 * 1 2 3 33 33 H 0.96696 * 113.99912 * 89.99339 * 4 3 2 34 34 H 1.09007 * 109.47219 * 315.00337 * 6 5 3 35 35 H 0.96703 * 113.99813 * 179.97438 * 7 6 5 36 36 H 1.48506 * 109.99590 * 300.00272 * 8 6 5 37 37 H 1.48504 * 110.00160 * 61.31285 * 8 6 5 38 38 H 1.07995 * 120.04110 * 180.02562 * 9 5 3 39 39 H 0.97001 * 120.00039 * 359.97438 * 13 11 10 40 40 H 1.09004 * 109.47317 * 299.99041 * 16 14 13 41 41 H 1.08994 * 109.47662 * 59.99803 * 16 14 13 42 42 H 1.08998 * 109.47734 * 59.99460 * 17 16 14 43 43 H 1.09002 * 109.47111 * 180.02562 * 17 16 14 44 44 H 1.08002 * 120.04142 * 179.97438 * 22 21 20 45 45 H 1.07999 * 120.70697 * 179.97438 * 23 22 21 46 46 H 0.96998 * 120.03656 * 0.02562 * 26 20 18 47 47 H 1.08994 * 109.47482 * 60.00213 * 27 18 17 48 48 H 1.08997 * 109.46858 * 180.02562 * 27 18 17 49 49 H 1.08994 * 109.47240 * 300.00535 * 28 27 18 50 50 H 1.08993 * 109.47265 * 179.97438 * 28 27 18 51 51 H 1.08000 * 120.04765 * 359.70052 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2041 0.0000 4 8 1.5197 2.3778 0.0009 5 6 3.5911 1.2095 -0.0005 6 6 4.3386 2.5180 0.0000 7 8 4.2726 3.1036 1.3019 8 14 6.1196 2.2161 -0.4556 9 6 4.2860 0.0208 -0.0017 10 6 3.5918 -1.1922 -0.0012 11 6 4.3328 -2.4687 -0.0018 12 8 5.5487 -2.4659 -0.0032 13 7 3.6616 -3.6375 -0.0019 14 6 4.3971 -4.9045 -0.0019 15 1 5.3076 -4.7961 0.5875 16 6 3.5224 -6.0019 0.6077 17 6 4.2908 -7.3250 0.6083 18 6 4.6559 -7.7032 -0.8286 19 1 3.7456 -7.8118 -1.4182 20 6 5.4122 -9.0068 -0.8282 21 7 6.0694 -9.3631 0.2432 22 6 6.7540 -10.5085 0.2930 23 6 6.7762 -11.3341 -0.7900 24 6 6.0669 -10.9494 -1.9466 25 8 6.0602 -11.6597 -2.9382 26 7 5.3907 -9.7809 -1.9309 27 6 5.5306 -6.6058 -1.4382 28 6 4.7622 -5.2827 -1.4388 29 6 2.1947 -1.1933 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8899 -0.5143 33 1 1.3228 2.7176 0.8846 34 1 3.8875 3.1944 -0.7260 35 1 4.7339 3.9503 1.3761 36 1 6.7460 1.2952 0.5267 37 1 6.2035 1.6365 -1.8203 38 1 5.3659 0.0258 -0.0017 39 1 2.6916 -3.6398 -0.0011 40 1 3.2627 -5.7327 1.6316 41 1 2.6120 -6.1102 0.0184 42 1 5.2011 -7.2164 1.1979 43 1 3.6675 -8.1069 1.0422 44 1 7.2894 -10.7797 1.1909 45 1 7.3261 -12.2632 -0.7639 46 1 4.8927 -9.4974 -2.7135 47 1 6.4408 -6.4971 -0.8487 48 1 5.7903 -6.8751 -2.4620 49 1 3.8520 -5.3914 -2.0283 50 1 5.3854 -4.5008 -1.8726 51 1 1.6548 -2.1286 0.0039 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13287732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:20:53 Heat of formation + Delta-G solvation = -90.970657 kcal Electronic energy + Delta-G solvation = -35183.812580 eV Core-core repulsion = 30435.479360 eV Total energy + Delta-G solvation = -4748.333220 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -42.92460 -41.85134 -40.79911 -39.64590 -38.55659 -37.76288 -37.55780 -35.96991 -35.27190 -34.15591 -32.89122 -31.93195 -31.73817 -30.00637 -28.06054 -26.92322 -26.07493 -25.51437 -24.55412 -23.77497 -22.64113 -22.03383 -21.54602 -20.83233 -19.79584 -19.56748 -19.20843 -18.65398 -18.40910 -18.00982 -17.81552 -17.10384 -16.89714 -16.71771 -16.27515 -16.18734 -15.88018 -15.65266 -15.49642 -15.36247 -15.21302 -15.09521 -14.96184 -14.48602 -14.32186 -14.10943 -14.05274 -13.96669 -13.73822 -13.53197 -13.48131 -13.22838 -13.02189 -12.88979 -12.65277 -12.55084 -12.38755 -12.19730 -12.16891 -12.06482 -11.64842 -11.53599 -11.42844 -11.39547 -11.16751 -11.10116 -10.37615 -10.27850 -10.06520 -9.74060 -9.69339 -5.09637 -0.50622 -0.48073 -0.05403 0.65436 1.19900 1.47064 1.53332 1.55553 1.89293 1.93887 2.43475 2.47669 2.74993 3.05900 3.23768 3.37219 3.47381 3.53057 3.58035 3.60006 3.67449 3.78463 3.86438 3.94332 4.08338 4.11657 4.14233 4.25642 4.30165 4.31354 4.34925 4.38720 4.46504 4.47799 4.54455 4.61269 4.66112 4.78598 4.80640 4.85907 4.93333 4.94260 4.99829 5.03418 5.12095 5.14983 5.18244 5.25036 5.26634 5.32769 5.33545 5.44416 5.50408 5.53801 6.37329 6.64369 6.65749 6.68455 6.83210 7.03720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.116 4.116 3 C 0.158 3.842 4 O -0.491 6.491 5 C -0.126 4.126 6 C -0.059 4.059 7 O -0.557 6.557 8 Si 0.763 3.237 9 C -0.083 4.083 10 C -0.154 4.154 11 C 0.558 3.442 12 O -0.584 6.584 13 N -0.701 5.701 14 C 0.140 3.860 15 H 0.065 0.935 16 C -0.117 4.117 17 C -0.092 4.092 18 C -0.039 4.039 19 H 0.135 0.865 20 C 0.409 3.591 21 N -0.545 5.545 22 C 0.172 3.828 23 C -0.318 4.318 24 C 0.509 3.491 25 O -0.593 6.593 26 N -0.615 5.615 27 C -0.104 4.104 28 C -0.121 4.121 29 C -0.053 4.053 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.414 0.586 34 H 0.096 0.904 35 H 0.405 0.595 36 H -0.301 1.301 37 H -0.298 1.298 38 H 0.111 0.889 39 H 0.417 0.583 40 H 0.082 0.918 41 H 0.100 0.900 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.198 0.802 45 H 0.159 0.841 46 H 0.429 0.571 47 H 0.061 0.939 48 H 0.078 0.922 49 H 0.094 0.906 50 H 0.046 0.954 51 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.370 5.879 3.656 10.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.117 4.117 3 C 0.112 3.888 4 O -0.305 6.305 5 C -0.127 4.127 6 C -0.170 4.170 7 O -0.367 6.367 8 Si 0.671 3.329 9 C -0.102 4.102 10 C -0.157 4.157 11 C 0.346 3.654 12 O -0.465 6.465 13 N -0.353 5.353 14 C 0.036 3.964 15 H 0.083 0.917 16 C -0.154 4.154 17 C -0.131 4.131 18 C -0.059 4.059 19 H 0.153 0.847 20 C 0.145 3.855 21 N -0.268 5.268 22 C 0.033 3.967 23 C -0.342 4.342 24 C 0.310 3.690 25 O -0.476 6.476 26 N -0.252 5.252 27 C -0.143 4.143 28 C -0.160 4.160 29 C -0.071 4.071 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.275 0.725 34 H 0.114 0.886 35 H 0.257 0.743 36 H -0.230 1.230 37 H -0.226 1.226 38 H 0.129 0.871 39 H 0.256 0.744 40 H 0.101 0.899 41 H 0.118 0.882 42 H 0.091 0.909 43 H 0.103 0.897 44 H 0.215 0.785 45 H 0.177 0.823 46 H 0.269 0.731 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.113 0.887 50 H 0.065 0.935 51 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -7.056 4.537 3.209 8.982 hybrid contribution -0.118 -0.713 -0.703 1.008 sum -7.174 3.824 2.506 8.507 Atomic orbital electron populations 1.20793 0.87459 1.04520 1.03912 1.20550 0.98776 0.91486 1.00894 1.18394 0.88236 0.86430 0.95721 1.84604 1.75176 1.35306 1.35428 1.19867 0.94227 0.94139 1.04442 1.24427 1.09109 0.93691 0.89765 1.86384 1.79792 1.42347 1.28190 0.94767 0.76689 0.85876 0.75551 1.20965 0.99266 0.92212 0.97733 1.19863 0.94868 0.92428 1.08543 1.18347 0.86689 0.84774 0.75543 1.90790 1.15609 1.88198 1.51931 1.45815 1.11127 1.04491 1.73881 1.21147 0.95946 0.82414 0.96890 0.91720 1.21800 0.98742 0.92285 1.02612 1.21332 1.01569 0.96801 0.93391 1.20675 0.98129 0.85801 1.01322 0.84742 1.23699 0.89010 0.91937 0.80879 1.68396 1.14799 1.19537 1.24052 1.23178 0.88998 0.86313 0.98210 1.23006 1.10210 1.06740 0.94276 1.17659 0.80640 0.80719 0.90006 1.90990 1.65797 1.53507 1.37275 1.44625 1.43538 1.19447 1.17597 1.21485 0.98228 0.93026 1.01541 1.21835 1.01406 0.96106 0.96639 1.21428 0.91055 0.99516 0.95096 0.89438 0.90852 0.89181 0.72470 0.88636 0.74304 1.22982 1.22607 0.87131 0.74386 0.89899 0.88198 0.90900 0.89654 0.78541 0.82342 0.73062 0.92058 0.90376 0.88735 0.93512 0.80994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.81 9.78 71.24 0.70 1.51 16 2 C -0.12 0.21 5.89 -19.81 -0.12 0.09 16 3 C 0.16 0.31 6.66 22.63 0.15 0.46 16 4 O -0.49 0.55 11.84 -90.31 -1.07 -0.52 16 5 C -0.13 -0.72 5.30 -19.81 -0.11 -0.83 16 6 C -0.06 -0.08 2.36 71.23 0.17 0.09 16 7 O -0.56 0.53 12.86 -148.98 -1.92 -1.38 16 8 Si 0.76 2.05 30.19 68.60 2.07 4.12 16 9 C -0.08 -0.78 8.20 22.51 0.18 -0.60 16 10 C -0.15 -0.77 5.87 -20.08 -0.12 -0.89 16 11 C 0.56 3.67 7.73 86.71 0.67 4.34 16 12 O -0.58 -9.58 16.00 -3.99 -0.06 -9.65 16 13 N -0.70 2.24 5.03 -445.62 -2.24 0.00 16 14 C 0.14 -0.55 2.45 44.99 0.11 -0.44 16 15 H 0.06 0.18 7.58 -2.39 -0.02 0.16 16 16 C -0.12 1.22 5.39 30.59 0.16 1.39 16 17 C -0.09 0.80 4.67 30.60 0.14 0.94 16 18 C -0.04 0.36 2.48 -11.54 -0.03 0.33 16 19 H 0.13 -2.02 8.14 -2.39 -0.02 -2.04 16 20 C 0.41 -1.41 6.73 138.18 0.93 -0.48 16 21 N -0.54 0.42 9.12 -187.55 -1.71 -1.29 16 22 C 0.17 -0.17 11.20 83.96 0.94 0.77 16 23 C -0.32 -1.11 10.07 22.48 0.23 -0.89 16 24 C 0.51 3.88 7.75 84.89 0.66 4.54 16 25 O -0.59 -10.09 17.97 -5.26 -0.09 -10.18 16 26 N -0.61 0.62 5.25 -310.69 -1.63 -1.01 16 27 C -0.10 0.62 5.19 30.60 0.16 0.78 16 28 C -0.12 0.57 5.50 30.59 0.17 0.74 16 29 C -0.05 0.14 9.18 22.50 0.21 0.35 16 30 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 31 H 0.07 -0.41 7.52 -2.39 -0.02 -0.43 16 32 H 0.09 -0.96 8.08 -2.38 -0.02 -0.98 16 33 H 0.41 -3.36 9.06 -74.06 -0.67 -4.03 16 34 H 0.10 -0.16 7.82 -2.38 -0.02 -0.18 16 35 H 0.41 -4.48 8.74 -74.06 -0.65 -5.13 16 36 H -0.30 -3.55 6.75 99.48 0.67 -2.88 16 37 H -0.30 -2.94 7.11 99.48 0.71 -2.23 16 38 H 0.11 1.57 4.47 -2.91 -0.01 1.55 16 39 H 0.42 -4.48 6.62 -92.71 -0.61 -5.09 16 40 H 0.08 -0.85 8.14 -2.39 -0.02 -0.87 16 41 H 0.10 -1.53 8.14 -2.39 -0.02 -1.55 16 42 H 0.07 -0.33 7.76 -2.39 -0.02 -0.35 16 43 H 0.08 -0.81 8.14 -2.39 -0.02 -0.83 16 44 H 0.20 -1.42 8.06 -2.91 -0.02 -1.44 16 45 H 0.16 0.36 8.06 -2.91 -0.02 0.34 16 46 H 0.43 -2.49 8.78 -92.71 -0.81 -3.30 16 47 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 48 H 0.08 -0.54 8.14 -2.39 -0.02 -0.56 16 49 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 50 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 51 H 0.17 -1.98 6.39 -2.91 -0.02 -2.00 16 Total: 0.00 -38.12 416.74 -3.16 -41.28 By element: Atomic # 1 Polarization: -31.89 SS G_CDS: -1.71 Total: -33.61 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 5.21 Total: 12.22 kcal Atomic # 7 Polarization: 3.29 SS G_CDS: -5.58 Total: -2.29 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -3.14 Total: -21.73 kcal Atomic # 14 Polarization: 2.05 SS G_CDS: 2.07 Total: 4.12 kcal Total: -38.12 -3.16 -41.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13287732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.688 kcal (2) G-P(sol) polarization free energy of solvation -38.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds