Wall clock time and date at job start Sun Mar 7 2021 03:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86301 * 109.47259 * 2 1 4 4 C 1.50701 * 109.46937 * 239.99996 * 2 1 3 5 5 C 1.38362 * 120.34548 * 299.99953 * 4 2 1 6 6 C 1.40029 * 118.28586 * 180.02562 * 5 4 2 7 7 C 1.47839 * 120.55887 * 180.02562 * 6 5 4 8 8 O 1.21553 * 119.99801 * 359.97438 * 7 6 5 9 9 N 1.34773 * 119.99849 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00006 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.47390 * 34.99181 * 10 9 7 12 12 C 1.52997 * 109.47573 * 154.99437 * 10 9 7 13 13 C 1.52995 * 109.47553 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47229 * 300.00554 * 13 12 10 15 15 H 1.09002 * 109.46615 * 299.99245 * 14 13 12 16 16 C 1.50706 * 109.47304 * 180.02562 * 14 13 12 17 17 N 1.30639 * 119.24998 * 334.71936 * 16 14 13 18 18 C 1.33516 * 121.50203 * 179.75995 * 17 16 14 19 19 C 1.36202 * 119.91239 * 0.51768 * 18 17 16 20 20 C 1.41027 * 118.59238 * 359.74718 * 19 18 17 21 21 O 1.21975 * 120.70967 * 180.02562 * 20 19 18 22 22 N 1.34746 * 119.25461 * 154.99791 * 16 14 13 23 23 C 1.52991 * 109.47499 * 59.99527 * 14 13 12 24 24 C 1.53001 * 109.47039 * 274.99887 * 10 9 7 25 25 C 1.39520 * 118.88118 * 0.02562 * 6 5 4 26 26 N 1.31695 * 120.57030 * 359.97438 * 25 6 5 27 27 C 1.31933 * 121.87747 * 359.70623 * 26 25 6 28 28 H 0.96702 * 113.99404 * 300.00134 * 1 2 3 29 29 H 1.09001 * 109.47103 * 120.00361 * 2 1 3 30 30 H 1.48504 * 110.00019 * 178.68243 * 3 2 1 31 31 H 1.48503 * 109.99816 * 299.99729 * 3 2 1 32 32 H 1.07998 * 120.86002 * 0.02562 * 5 4 2 33 33 H 0.96999 * 120.00227 * 359.97438 * 9 7 6 34 34 H 1.08998 * 109.47038 * 300.00145 * 12 10 9 35 35 H 1.09002 * 109.47324 * 59.99901 * 12 10 9 36 36 H 1.09003 * 109.47219 * 59.99860 * 13 12 10 37 37 H 1.08997 * 109.47651 * 179.97438 * 13 12 10 38 38 H 1.08000 * 120.04661 * 180.26722 * 18 17 16 39 39 H 1.08002 * 120.70840 * 179.73156 * 19 18 17 40 40 H 0.97002 * 120.04107 * 359.94831 * 22 16 14 41 41 H 1.09002 * 109.47417 * 60.00209 * 23 14 13 42 42 H 1.08998 * 109.47232 * 180.02562 * 23 14 13 43 43 H 1.09002 * 109.46615 * 299.99338 * 24 10 9 44 44 H 1.08991 * 109.47610 * 59.99573 * 24 10 9 45 45 H 1.07997 * 119.72008 * 179.97438 * 25 6 5 46 46 H 1.07995 * 119.46223 * 180.31029 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0501 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 1.6014 -2.0350 -1.4565 6 6 2.0920 -2.6529 -2.6134 7 6 1.7702 -4.0661 -2.9049 8 8 1.0747 -4.7018 -2.1370 9 7 2.2489 -4.6497 -4.0214 10 6 1.9295 -6.0499 -4.3105 11 1 0.9184 -6.2702 -3.9680 12 6 2.0216 -6.2933 -5.8182 13 6 1.6887 -7.7557 -6.1201 14 6 2.6827 -8.6652 -5.3950 15 1 3.6937 -8.4446 -5.7376 16 6 2.3552 -10.1058 -5.6929 17 7 1.1325 -10.4276 -6.0219 18 6 0.7937 -11.6889 -6.2995 19 6 1.7313 -12.6745 -6.2322 20 6 3.0500 -12.3281 -5.8719 21 8 3.9203 -13.1798 -5.8002 22 7 3.3287 -11.0335 -5.6083 23 6 2.5906 -8.4219 -3.8874 24 6 2.9231 -6.9598 -3.5854 25 6 2.8897 -1.9124 -3.4863 26 7 3.1761 -0.6534 -3.2271 27 6 2.7229 -0.0435 -2.1485 28 1 -0.3932 0.4417 0.7651 29 1 1.7924 -0.5139 0.8900 30 1 3.5347 1.7702 0.0321 31 1 1.5616 2.4678 -1.2086 32 1 0.9816 -2.5783 -0.7588 33 1 2.8042 -4.1425 -4.6339 34 1 1.3138 -5.6450 -6.3348 35 1 3.0327 -6.0730 -6.1607 36 1 0.6777 -7.9764 -5.7775 37 1 1.7539 -7.9290 -7.1942 38 1 -0.2233 -11.9279 -6.5731 39 1 1.4704 -13.6997 -6.4499 40 1 4.2288 -10.7716 -5.3589 41 1 1.5796 -8.6426 -3.5448 42 1 3.2990 -9.0696 -3.3709 43 1 3.9341 -6.7396 -3.9279 44 1 2.8575 -6.7865 -2.5113 45 1 3.2756 -2.3756 -4.3823 46 1 2.9780 0.9917 -1.9770 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13287814.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:21:03 Heat of formation + Delta-G solvation = -30.614556 kcal Electronic energy + Delta-G solvation = -30607.406654 eV Core-core repulsion = 26270.484571 eV Total energy + Delta-G solvation = -4336.922083 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 357.152 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.90625 -42.02087 -40.75342 -39.55756 -38.48941 -37.85676 -35.94553 -35.26423 -33.94413 -33.55319 -32.32669 -31.80325 -30.12401 -27.32722 -26.47349 -25.60822 -25.00721 -23.85288 -23.69468 -22.66752 -21.58292 -20.86714 -19.78025 -19.24005 -18.98522 -18.58286 -18.18372 -18.04589 -17.78837 -17.08165 -16.94702 -16.36783 -16.27571 -15.91109 -15.64117 -15.49429 -15.35535 -15.17984 -15.13133 -14.69510 -14.46815 -14.43227 -14.27248 -14.07974 -13.99259 -13.80389 -13.44525 -13.17551 -12.66030 -12.53102 -12.36700 -12.17377 -12.12829 -12.04154 -11.62409 -11.51258 -11.38865 -11.28424 -11.16441 -11.09116 -10.80555 -10.61311 -10.22117 -10.11372 -9.67549 -4.96940 -0.70685 -0.46189 -0.12371 0.67235 1.22841 1.55180 1.57925 1.64371 1.89531 1.93890 2.49563 2.51387 2.77038 2.95448 3.19235 3.39444 3.43308 3.55702 3.59317 3.63411 3.66910 3.70784 3.72302 3.95133 4.03565 4.13553 4.16467 4.18439 4.28474 4.34749 4.39382 4.44854 4.49287 4.51676 4.62938 4.73662 4.79697 4.82843 4.87952 5.00772 5.06903 5.15947 5.18727 5.21625 5.29900 5.34568 5.36358 5.46585 5.54229 6.35824 6.49655 6.66026 6.70319 6.84692 7.03043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.565 6.565 2 C -0.080 4.080 3 Si 0.779 3.221 4 C -0.142 4.142 5 C 0.001 3.999 6 C -0.192 4.192 7 C 0.567 3.433 8 O -0.569 6.569 9 N -0.703 5.703 10 C 0.142 3.858 11 H 0.069 0.931 12 C -0.119 4.119 13 C -0.092 4.092 14 C -0.040 4.040 15 H 0.133 0.867 16 C 0.409 3.591 17 N -0.544 5.544 18 C 0.173 3.827 19 C -0.319 4.319 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.104 4.104 24 C -0.121 4.121 25 C 0.144 3.856 26 N -0.496 5.496 27 C 0.108 3.892 28 H 0.407 0.593 29 H 0.101 0.899 30 H -0.279 1.279 31 H -0.291 1.291 32 H 0.146 0.854 33 H 0.416 0.584 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.198 0.802 39 H 0.158 0.842 40 H 0.429 0.571 41 H 0.063 0.937 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.200 0.800 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 7.201 0.657 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.375 6.375 2 C -0.190 4.190 3 Si 0.683 3.317 4 C -0.144 4.144 5 C -0.026 4.026 6 C -0.197 4.197 7 C 0.354 3.646 8 O -0.449 6.449 9 N -0.355 5.355 10 C 0.038 3.962 11 H 0.088 0.912 12 C -0.157 4.157 13 C -0.131 4.131 14 C -0.060 4.060 15 H 0.151 0.849 16 C 0.145 3.855 17 N -0.268 5.268 18 C 0.033 3.967 19 C -0.343 4.343 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.252 5.252 23 C -0.143 4.143 24 C -0.160 4.160 25 C -0.015 4.015 26 N -0.204 5.204 27 C -0.048 4.048 28 H 0.259 0.741 29 H 0.118 0.882 30 H -0.206 1.206 31 H -0.218 1.218 32 H 0.164 0.836 33 H 0.254 0.746 34 H 0.100 0.900 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.214 0.786 39 H 0.176 0.824 40 H 0.269 0.731 41 H 0.082 0.918 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.071 0.929 45 H 0.217 0.783 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 0.502 7.310 -0.462 7.342 hybrid contribution 0.552 -1.661 0.464 1.811 sum 1.054 5.649 0.002 5.747 Atomic orbital electron populations 1.86438 1.16893 1.82598 1.51619 1.24833 0.86263 1.11661 0.96239 0.93868 0.77692 0.74778 0.85341 1.20705 1.00209 0.95008 0.98474 1.21700 0.92662 0.93272 0.94953 1.21132 1.04104 0.95760 0.98731 1.18038 0.79193 0.85671 0.81707 1.90804 1.39548 1.65485 1.49017 1.45845 1.52727 1.13586 1.23330 1.21142 0.99270 0.79111 0.96691 0.91229 1.21808 1.04673 0.96856 0.92327 1.21325 0.99019 0.92013 1.00747 1.20685 1.03700 0.84020 0.97602 0.84916 1.23727 0.83590 0.93084 0.85107 1.68389 1.15279 1.20989 1.22107 1.23175 1.01127 0.86293 0.86060 1.23005 0.92340 1.04159 1.14814 1.17659 0.91065 0.81476 0.78834 1.90988 1.50988 1.48724 1.56911 1.44630 1.15505 1.08830 1.56268 1.21483 1.03068 0.96921 0.92809 1.21828 1.00427 0.93410 1.00301 1.23535 0.91051 0.88848 0.98034 1.67733 1.22256 1.11313 1.19115 1.22856 0.93079 0.99585 0.89268 0.74080 0.88161 1.20554 1.21797 0.83629 0.74554 0.89977 0.88414 0.90739 0.89917 0.78550 0.82393 0.73071 0.91831 0.90383 0.88941 0.92931 0.78319 0.82701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.89 12.75 -148.98 -1.90 -1.01 16 2 C -0.08 0.20 2.82 71.24 0.20 0.40 16 3 Si 0.78 -3.72 29.82 68.60 2.05 -1.67 16 4 C -0.14 -0.46 5.42 -19.81 -0.11 -0.57 16 5 C 0.00 0.00 9.31 22.73 0.21 0.21 16 6 C -0.19 -0.43 5.89 -19.99 -0.12 -0.55 16 7 C 0.57 1.55 7.75 86.79 0.67 2.23 16 8 O -0.57 -6.35 16.08 -3.88 -0.06 -6.41 16 9 N -0.70 3.88 5.03 -445.43 -2.24 1.64 16 10 C 0.14 -0.85 2.45 44.99 0.11 -0.74 16 11 H 0.07 0.00 7.58 -2.39 -0.02 -0.02 16 12 C -0.12 1.35 5.39 30.59 0.16 1.52 16 13 C -0.09 0.87 4.67 30.59 0.14 1.02 16 14 C -0.04 0.40 2.48 -11.54 -0.03 0.37 16 15 H 0.13 -2.06 8.14 -2.39 -0.02 -2.08 16 16 C 0.41 -1.67 6.73 138.18 0.93 -0.74 16 17 N -0.54 0.76 9.12 -187.55 -1.71 -0.95 16 18 C 0.17 -0.26 11.20 83.96 0.94 0.68 16 19 C -0.32 -0.99 10.07 22.48 0.23 -0.77 16 20 C 0.51 3.68 7.75 84.89 0.66 4.34 16 21 O -0.59 -9.90 17.97 -5.24 -0.09 -9.99 16 22 N -0.61 0.92 5.25 -310.69 -1.63 -0.71 16 23 C -0.10 0.79 5.19 30.58 0.16 0.95 16 24 C -0.12 0.83 5.49 30.58 0.17 0.99 16 25 C 0.14 -0.12 10.71 85.02 0.91 0.79 16 26 N -0.50 -2.08 10.35 -194.76 -2.02 -4.09 16 27 C 0.11 0.46 9.84 84.70 0.83 1.29 16 28 H 0.41 -4.98 8.74 -74.06 -0.65 -5.63 16 29 H 0.10 -0.65 7.96 -2.39 -0.02 -0.67 16 30 H -0.28 0.04 7.11 99.48 0.71 0.75 16 31 H -0.29 -0.74 7.11 99.48 0.71 -0.03 16 32 H 0.15 0.84 7.74 -2.91 -0.02 0.81 16 33 H 0.42 -5.05 6.67 -92.71 -0.62 -5.67 16 34 H 0.08 -0.89 8.14 -2.39 -0.02 -0.91 16 35 H 0.10 -1.53 8.14 -2.39 -0.02 -1.55 16 36 H 0.07 -0.42 7.76 -2.39 -0.02 -0.44 16 37 H 0.08 -0.80 8.14 -2.39 -0.02 -0.82 16 38 H 0.20 -1.51 8.06 -2.91 -0.02 -1.53 16 39 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 40 H 0.43 -2.69 8.78 -92.71 -0.81 -3.50 16 41 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.08 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 44 H 0.05 -0.05 8.14 -2.39 -0.02 -0.07 16 45 H 0.20 -1.98 6.42 -2.91 -0.02 -2.00 16 46 H 0.16 0.40 4.88 -2.91 -0.01 0.38 16 Total: 0.00 -33.88 381.54 -2.51 -36.39 By element: Atomic # 1 Polarization: -23.64 SS G_CDS: -0.98 Total: -24.62 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: 6.08 Total: 11.43 kcal Atomic # 7 Polarization: 3.49 SS G_CDS: -7.60 Total: -4.11 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -2.06 Total: -17.42 kcal Atomic # 14 Polarization: -3.72 SS G_CDS: 2.05 Total: -1.67 kcal Total: -33.88 -2.51 -36.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13287814.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.779 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds