Wall clock time and date at job start Sun Mar 7 2021 03:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42898 * 1 3 3 Si 1.86301 * 109.47236 * 2 1 4 4 C 1.50705 * 109.46951 * 120.00006 * 2 1 3 5 5 C 1.38504 * 119.80314 * 245.00037 * 4 2 1 6 6 C 1.37829 * 120.30082 * 180.02562 * 5 4 2 7 7 C 1.39669 * 119.90300 * 359.97438 * 6 5 4 8 8 C 1.47543 * 120.18939 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00350 * 179.97438 * 8 7 6 10 10 N 1.34784 * 119.99766 * 0.02562 * 8 7 6 11 11 C 1.46494 * 119.99635 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.47706 * 34.99696 * 11 10 8 13 13 C 1.53004 * 109.46982 * 155.00372 * 11 10 8 14 14 C 1.53000 * 109.47072 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46950 * 299.99353 * 14 13 11 16 16 H 1.09003 * 109.47189 * 300.00626 * 15 14 13 17 17 C 1.50700 * 109.47199 * 180.02562 * 15 14 13 18 18 N 1.30642 * 119.25093 * 335.00079 * 17 15 14 19 19 C 1.33521 * 121.50326 * 179.97438 * 18 17 15 20 20 C 1.36201 * 119.90772 * 0.02562 * 19 18 17 21 21 C 1.41018 * 118.59511 * 359.97438 * 20 19 18 22 22 O 1.21979 * 120.70805 * 180.02562 * 21 20 19 23 23 N 1.34746 * 119.25405 * 154.72839 * 17 15 14 24 24 C 1.52995 * 109.46863 * 60.00428 * 15 14 13 25 25 C 1.53005 * 109.47118 * 274.99773 * 11 10 8 26 26 C 1.40174 * 119.62152 * 0.27662 * 7 6 5 27 27 O 1.35654 * 120.15143 * 179.70790 * 26 7 6 28 28 C 1.38095 * 119.80408 * 64.97944 * 4 2 1 29 29 H 0.96699 * 114.00465 * 59.99922 * 1 2 3 30 30 H 1.08997 * 109.47033 * 239.99592 * 2 1 3 31 31 H 1.48498 * 109.99746 * 298.68049 * 3 2 1 32 32 H 1.48495 * 109.99973 * 59.99847 * 3 2 1 33 33 H 1.07997 * 119.85080 * 0.02562 * 5 4 2 34 34 H 1.07999 * 120.04847 * 180.02562 * 6 5 4 35 35 H 0.96995 * 120.00015 * 359.72375 * 10 8 7 36 36 H 1.09002 * 109.46770 * 299.99381 * 13 11 10 37 37 H 1.08996 * 109.47170 * 59.99895 * 13 11 10 38 38 H 1.08990 * 109.47431 * 59.99389 * 14 13 11 39 39 H 1.09006 * 109.46868 * 179.97438 * 14 13 11 40 40 H 1.08000 * 120.04248 * 180.02562 * 19 18 17 41 41 H 1.08006 * 120.69882 * 180.02562 * 20 19 18 42 42 H 0.97000 * 120.04388 * 0.02763 * 23 17 15 43 43 H 1.08995 * 109.47831 * 59.99819 * 24 15 14 44 44 H 1.09001 * 109.47451 * 180.02562 * 24 15 14 45 45 H 1.08996 * 109.47503 * 300.00392 * 25 11 10 46 46 H 1.08997 * 109.47041 * 60.00616 * 25 11 10 47 47 H 0.96698 * 114.00221 * 89.99721 * 27 26 7 48 48 H 1.08003 * 119.96027 * 359.97438 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6396 -0.0070 2.1906 6 6 3.1042 -0.6466 3.3197 7 6 2.8598 -2.0101 3.4978 8 6 3.3547 -2.7012 4.7038 9 8 3.1396 -3.8883 4.8556 10 7 4.0444 -2.0165 5.6376 11 6 4.5353 -2.7026 6.8352 12 1 4.8260 -3.7209 6.5772 13 6 5.7465 -1.9520 7.3926 14 6 6.2596 -2.6689 8.6430 15 6 5.1532 -2.7071 9.6992 16 1 4.8622 -1.6889 9.9576 17 6 5.6587 -3.4127 10.9311 18 7 6.6330 -4.2756 10.8179 19 6 7.1159 -4.9259 11.8794 20 6 6.5901 -4.6947 13.1144 21 6 5.5384 -3.7633 13.2367 22 8 5.0394 -3.5265 14.3243 23 7 5.0993 -3.1352 12.1251 24 6 3.9420 -3.4576 9.1419 25 6 3.4286 -2.7402 7.8911 26 6 2.1471 -2.7196 2.5213 27 8 1.9088 -4.0455 2.6805 28 6 1.6822 -2.0588 1.3943 29 1 -0.3934 0.4417 -0.7650 30 1 1.7923 -0.5139 -0.8899 31 1 1.5879 2.4585 -1.2242 32 1 1.5615 2.4679 1.2084 33 1 2.8287 1.0475 2.0540 34 1 3.6557 -0.0940 4.0659 35 1 4.2188 -1.0703 5.5149 36 1 6.5349 -1.9252 6.6404 37 1 5.4557 -0.9338 7.6507 38 1 6.5504 -3.6870 8.3846 39 1 7.1228 -2.1344 9.0398 40 1 7.9223 -5.6341 11.7588 41 1 6.9712 -5.2133 13.9818 42 1 4.3792 -2.4880 12.1854 43 1 4.2327 -4.4758 8.8834 44 1 3.1535 -3.4845 9.8940 45 1 3.1378 -1.7220 8.1492 46 1 2.5658 -3.2749 7.4942 47 1 1.0834 -4.2440 3.1436 48 1 1.1285 -2.6004 0.6416 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13422076.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:21:15 Heat of formation + Delta-G solvation = -82.186446 kcal Electronic energy + Delta-G solvation = -32924.981337 eV Core-core repulsion = 28332.566648 eV Total energy + Delta-G solvation = -4592.414689 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 372.156 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.89059 -41.66393 -40.39932 -39.40790 -38.56613 -38.22514 -37.27523 -35.82512 -35.14061 -33.26314 -32.20540 -31.75472 -31.08161 -30.07061 -27.48673 -25.80947 -25.32782 -23.85314 -23.70782 -23.51146 -22.45676 -21.43258 -20.90065 -19.77005 -19.34799 -19.09069 -18.60982 -18.56698 -17.81052 -17.66727 -17.06778 -16.78156 -16.54410 -16.31921 -15.94028 -15.89228 -15.62714 -15.55613 -15.50218 -15.17857 -14.97181 -14.58727 -14.42444 -14.10028 -14.05556 -13.97781 -13.88427 -13.44275 -13.27014 -13.11662 -12.93313 -12.54561 -12.46755 -12.31993 -12.11581 -12.09291 -12.01543 -11.61976 -11.55943 -11.37165 -11.29041 -11.07726 -10.81398 -10.55161 -10.16386 -9.94485 -9.74104 -9.66271 -4.89200 -0.44843 -0.37616 0.17965 0.68532 1.28645 1.56729 1.64030 1.75572 1.97491 2.10456 2.50889 2.58509 2.79292 3.16516 3.29097 3.42552 3.57024 3.65374 3.66419 3.74194 3.77661 3.83666 4.01451 4.12788 4.18048 4.20473 4.28826 4.31236 4.33674 4.38902 4.42644 4.51140 4.54635 4.64655 4.68227 4.79374 4.85867 4.89399 5.03060 5.04697 5.09365 5.15766 5.21119 5.26052 5.29237 5.34837 5.36066 5.45699 5.48623 5.59601 5.62553 6.55025 6.56135 6.67256 6.71821 6.71840 7.25165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.099 4.099 3 Si 0.777 3.223 4 C -0.036 4.036 5 C -0.135 4.135 6 C -0.051 4.051 7 C -0.180 4.180 8 C 0.557 3.443 9 O -0.563 6.563 10 N -0.708 5.708 11 C 0.143 3.857 12 H 0.064 0.936 13 C -0.118 4.118 14 C -0.092 4.092 15 C -0.039 4.039 16 H 0.134 0.866 17 C 0.409 3.591 18 N -0.545 5.545 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.104 4.104 25 C -0.120 4.120 26 C 0.150 3.850 27 O -0.497 6.497 28 C -0.143 4.143 29 H 0.397 0.603 30 H 0.095 0.905 31 H -0.291 1.291 32 H -0.285 1.285 33 H 0.160 0.840 34 H 0.174 0.826 35 H 0.415 0.585 36 H 0.082 0.918 37 H 0.098 0.902 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.429 0.571 43 H 0.061 0.939 44 H 0.076 0.924 45 H 0.091 0.909 46 H 0.049 0.951 47 H 0.405 0.595 48 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.351 8.132 -6.054 10.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.206 4.206 3 Si 0.681 3.319 4 C -0.037 4.037 5 C -0.152 4.152 6 C -0.069 4.069 7 C -0.184 4.184 8 C 0.345 3.655 9 O -0.443 6.443 10 N -0.361 5.361 11 C 0.039 3.961 12 H 0.082 0.918 13 C -0.155 4.155 14 C -0.131 4.131 15 C -0.060 4.060 16 H 0.151 0.849 17 C 0.145 3.855 18 N -0.268 5.268 19 C 0.034 3.966 20 C -0.343 4.343 21 C 0.310 3.690 22 O -0.476 6.476 23 N -0.252 5.252 24 C -0.143 4.143 25 C -0.158 4.158 26 C 0.104 3.896 27 O -0.310 6.310 28 C -0.161 4.161 29 H 0.248 0.752 30 H 0.113 0.887 31 H -0.218 1.218 32 H -0.212 1.212 33 H 0.177 0.823 34 H 0.191 0.809 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.116 0.884 38 H 0.091 0.909 39 H 0.101 0.899 40 H 0.214 0.786 41 H 0.176 0.824 42 H 0.269 0.731 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.110 0.890 46 H 0.068 0.932 47 H 0.265 0.735 48 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.874 7.482 -5.614 10.125 hybrid contribution -2.482 -0.089 0.577 2.550 sum 1.392 7.393 -5.038 9.054 Atomic orbital electron populations 1.86535 1.18262 1.80919 1.51135 1.25241 0.84386 1.12833 0.98186 0.93979 0.89975 0.71068 0.76862 1.19600 0.95773 0.92965 0.95343 1.21235 0.99325 1.01067 0.93615 1.21497 0.96340 0.91394 0.97687 1.20493 1.06259 0.95544 0.96060 1.18248 0.78175 0.86194 0.82903 1.90814 1.58159 1.16581 1.78725 1.45841 1.55767 1.13961 1.20514 1.21058 0.94257 0.97100 0.83685 0.91800 1.21799 0.96058 1.00260 0.97416 1.21329 0.96302 1.02609 0.92873 1.20684 0.96923 0.99837 0.88509 0.84868 1.23740 0.86371 0.88801 0.86588 1.68396 1.13940 1.12031 1.32413 1.23178 0.94799 0.92205 0.86466 1.23001 1.02794 1.06423 1.02132 1.17655 0.85176 0.82906 0.83293 1.90987 1.61938 1.67788 1.26924 1.44629 1.34357 1.38122 1.08113 1.21499 0.95870 0.99394 0.97541 1.21833 0.97720 1.02131 0.94143 1.18747 0.94928 0.83287 0.92643 1.84713 1.46977 1.18995 1.80288 1.21349 1.01460 0.94734 0.98588 0.75243 0.88729 1.21830 1.21226 0.82324 0.80891 0.74645 0.89956 0.88373 0.90913 0.89874 0.78556 0.82397 0.73071 0.92023 0.90513 0.88996 0.93190 0.73501 0.84916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.19 12.81 -148.98 -1.91 -1.72 16 2 C -0.10 0.35 2.78 71.24 0.20 0.55 16 3 Si 0.78 -4.96 29.83 68.60 2.05 -2.91 16 4 C -0.04 0.03 5.39 -19.83 -0.11 -0.08 16 5 C -0.14 0.65 8.64 22.24 0.19 0.85 16 6 C -0.05 0.29 9.54 22.52 0.21 0.50 16 7 C -0.18 -0.27 5.89 -20.01 -0.12 -0.38 16 8 C 0.56 1.92 7.73 86.70 0.67 2.59 16 9 O -0.56 -6.96 14.82 16.92 0.25 -6.71 16 10 N -0.71 3.67 5.03 -445.68 -2.24 1.43 16 11 C 0.14 -0.77 2.45 45.00 0.11 -0.66 16 12 H 0.06 0.09 7.58 -2.39 -0.02 0.07 16 13 C -0.12 1.32 5.39 30.60 0.16 1.49 16 14 C -0.09 0.85 4.67 30.60 0.14 1.00 16 15 C -0.04 0.38 2.48 -11.54 -0.03 0.35 16 16 H 0.13 -2.05 8.14 -2.39 -0.02 -2.07 16 17 C 0.41 -1.57 6.73 138.18 0.93 -0.64 16 18 N -0.54 0.62 9.11 -187.55 -1.71 -1.09 16 19 C 0.17 -0.22 11.20 83.96 0.94 0.72 16 20 C -0.32 -1.04 10.07 22.48 0.23 -0.82 16 21 C 0.51 3.75 7.75 84.88 0.66 4.41 16 22 O -0.59 -9.96 17.97 -5.25 -0.09 -10.06 16 23 N -0.61 0.82 5.25 -310.70 -1.63 -0.81 16 24 C -0.10 0.73 5.19 30.61 0.16 0.88 16 25 C -0.12 0.74 5.50 30.61 0.17 0.91 16 26 C 0.15 0.76 6.72 22.84 0.15 0.91 16 27 O -0.50 -3.88 11.58 -68.78 -0.80 -4.68 16 28 C -0.14 -0.41 9.60 22.34 0.21 -0.19 16 29 H 0.40 -3.22 8.74 -74.06 -0.65 -3.87 16 30 H 0.09 -0.62 7.96 -2.39 -0.02 -0.63 16 31 H -0.29 0.33 7.11 99.48 0.71 1.04 16 32 H -0.29 0.27 7.04 99.48 0.70 0.97 16 33 H 0.16 -1.57 4.83 -2.91 -0.01 -1.58 16 34 H 0.17 -2.49 6.40 -2.91 -0.02 -2.51 16 35 H 0.42 -5.12 6.63 -92.71 -0.61 -5.74 16 36 H 0.08 -0.90 8.14 -2.39 -0.02 -0.92 16 37 H 0.10 -1.56 8.14 -2.39 -0.02 -1.58 16 38 H 0.07 -0.37 7.76 -2.39 -0.02 -0.39 16 39 H 0.08 -0.81 8.14 -2.38 -0.02 -0.83 16 40 H 0.20 -1.47 8.06 -2.91 -0.02 -1.49 16 41 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 42 H 0.43 -2.63 8.78 -92.71 -0.81 -3.45 16 43 H 0.06 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 45 H 0.09 -0.96 8.14 -2.39 -0.02 -0.98 16 46 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 47 H 0.41 0.54 9.06 -74.06 -0.67 -0.14 16 48 H 0.13 0.37 8.06 -2.91 -0.02 0.35 16 Total: 0.00 -35.57 395.33 -2.85 -38.42 By element: Atomic # 1 Polarization: -22.61 SS G_CDS: -1.65 Total: -24.26 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.89 Total: 12.39 kcal Atomic # 7 Polarization: 5.11 SS G_CDS: -5.58 Total: -0.47 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -2.55 Total: -23.16 kcal Atomic # 14 Polarization: -4.96 SS G_CDS: 2.05 Total: -2.91 kcal Total: -35.57 -2.85 -38.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13422076.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.770 kcal (2) G-P(sol) polarization free energy of solvation -35.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds