Wall clock time and date at job start Sun Mar 7 2021 03:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37786 * 119.85139 * 2 1 4 4 C 1.39704 * 119.91062 * 179.97438 * 3 2 1 5 5 C 1.47534 * 120.19563 * 179.97438 * 4 3 2 6 6 O 1.21585 * 120.00269 * 180.02562 * 5 4 3 7 7 N 1.34782 * 119.99870 * 0.02562 * 5 4 3 8 8 C 1.46499 * 120.00074 * 179.97438 * 7 5 4 9 9 H 1.09001 * 109.46813 * 35.00305 * 8 7 5 10 10 C 1.53000 * 109.46840 * 155.00031 * 8 7 5 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 8 7 12 12 C 1.53006 * 109.47127 * 300.00449 * 11 10 8 13 13 H 1.09001 * 109.47002 * 299.99574 * 12 11 10 14 14 C 1.50703 * 109.47126 * 179.97438 * 12 11 10 15 15 N 1.30636 * 119.25523 * 265.00170 * 14 12 11 16 16 C 1.33522 * 121.50660 * 179.97438 * 15 14 12 17 17 C 1.36204 * 119.90863 * 0.02562 * 16 15 14 18 18 C 1.41019 * 118.59252 * 359.97438 * 17 16 15 19 19 O 1.21982 * 120.70698 * 180.02562 * 18 17 16 20 20 N 1.34747 * 119.24899 * 84.72445 * 14 12 11 21 21 C 1.52997 * 109.47164 * 59.99836 * 12 11 10 22 22 C 1.52996 * 109.47185 * 275.00149 * 8 7 5 23 23 C 1.40142 * 119.61658 * 0.25739 * 4 3 2 24 24 O 1.35651 * 120.15151 * 179.71938 * 23 4 3 25 25 C 1.38713 * 119.69775 * 359.46564 * 23 4 3 26 26 C 1.50693 * 119.96077 * 180.25396 * 25 23 4 27 27 O 1.42904 * 109.46975 * 285.28081 * 26 25 23 28 28 Si 1.86296 * 109.47385 * 165.28187 * 26 25 23 29 29 C 1.38061 * 120.07906 * 0.53437 * 25 23 4 30 30 H 1.09010 * 109.47150 * 89.99999 * 1 2 3 31 31 H 1.08994 * 109.47619 * 210.00199 * 1 2 3 32 32 H 1.09003 * 109.47339 * 330.00517 * 1 2 3 33 33 H 1.08002 * 120.04686 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99499 * 0.02562 * 7 5 4 35 35 H 1.09002 * 109.47398 * 300.00326 * 10 8 7 36 36 H 1.09001 * 109.47194 * 60.00507 * 10 8 7 37 37 H 1.08998 * 109.47533 * 59.99948 * 11 10 8 38 38 H 1.08996 * 109.47853 * 180.02562 * 11 10 8 39 39 H 1.07999 * 120.04377 * 179.97438 * 16 15 14 40 40 H 1.08000 * 120.70152 * 180.02562 * 17 16 15 41 41 H 0.96996 * 120.04886 * 0.02562 * 20 14 12 42 42 H 1.09002 * 109.47045 * 180.02562 * 21 12 11 43 43 H 1.09001 * 109.47375 * 59.99966 * 21 12 11 44 44 H 1.08992 * 109.47554 * 299.99819 * 22 8 7 45 45 H 1.09004 * 109.47108 * 60.00069 * 22 8 7 46 46 H 0.96700 * 113.99410 * 89.99934 * 24 23 4 47 47 H 1.09005 * 109.47294 * 45.27752 * 26 25 23 48 48 H 0.96693 * 114.00034 * 299.99787 * 27 26 25 49 49 H 1.48499 * 110.00389 * 58.67848 * 28 26 25 50 50 H 1.48505 * 110.00144 * 180.02562 * 28 26 25 51 51 H 1.08007 * 119.79729 * 179.71668 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1950 0.0000 4 6 3.5898 1.1965 0.0005 5 6 4.3305 2.4724 0.0000 6 8 5.5464 2.4696 0.0000 7 7 3.6594 3.6412 -0.0005 8 6 4.3949 4.9082 -0.0005 9 1 5.3055 4.7997 -0.5897 10 6 3.5204 6.0055 -0.6108 11 6 4.2887 7.3285 -0.6114 12 6 4.6535 7.7071 0.8255 13 1 3.7431 7.8160 1.4149 14 6 5.4109 9.0100 0.8249 15 7 6.7170 8.9893 0.8250 16 6 7.4328 10.1164 0.8239 17 6 6.8003 11.3226 0.8232 18 6 5.3903 11.3453 0.8231 19 8 4.7843 12.4039 0.8220 20 7 4.7253 10.1700 0.8185 21 6 5.5280 6.6099 1.4357 22 6 4.7591 5.2865 1.4365 23 6 4.2837 -0.0211 -0.0044 24 8 5.6401 -0.0324 -0.0097 25 6 3.5771 -1.2148 0.0015 26 6 4.3171 -2.5274 0.0020 27 8 4.8553 -2.7713 -1.2992 28 14 3.1441 -3.9016 0.4564 29 6 2.1965 -1.2016 0.0010 30 1 -0.3634 0.0000 -1.0278 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6511 2.1294 -0.0004 34 1 2.6894 3.6434 -0.0002 35 1 3.2609 5.7359 -1.6345 36 1 2.6098 6.1140 -0.0216 37 1 5.1992 7.2198 -1.2007 38 1 3.6657 8.1104 -1.0456 39 1 8.5119 10.0717 0.8245 40 1 7.3666 12.2422 0.8219 41 1 3.7554 10.1610 0.8148 42 1 5.7875 6.8794 2.4594 43 1 6.4384 6.5010 0.8463 44 1 3.8485 5.3951 2.0256 45 1 5.3821 4.5048 1.8712 46 1 6.0368 -0.0372 0.8722 47 1 5.1284 -2.4869 0.7289 48 1 4.1885 -2.8200 -1.9977 49 1 2.0166 -3.9470 -0.5089 50 1 3.8621 -5.2015 0.4611 51 1 1.6509 -2.1338 0.0009 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13422088.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 03:21:19 Heat of formation + Delta-G solvation = -87.325047 kcal Electronic energy + Delta-G solvation = -35381.885939 eV Core-core repulsion = 30633.710804 eV Total energy + Delta-G solvation = -4748.175135 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -42.89820 -41.76604 -40.52535 -39.44780 -38.46466 -38.00628 -37.74091 -35.83755 -35.16115 -33.26595 -32.99239 -32.17539 -31.75595 -30.01823 -27.50387 -26.77745 -26.13650 -25.48371 -24.64934 -23.72241 -22.62658 -21.94309 -21.40115 -20.79330 -19.77139 -19.64398 -19.15254 -18.38786 -18.12072 -17.79235 -17.48032 -17.03673 -16.79433 -16.70022 -16.13657 -16.01868 -15.89479 -15.73671 -15.61008 -15.31887 -15.13856 -14.86490 -14.85118 -14.50638 -14.37571 -14.18949 -14.11715 -13.92277 -13.56175 -13.43590 -13.31897 -13.15856 -12.87011 -12.50838 -12.47251 -12.31499 -12.23054 -12.11639 -12.06268 -11.80189 -11.69647 -11.54971 -11.39781 -11.32957 -11.08209 -10.94145 -10.50653 -10.21270 -9.95288 -9.67178 -9.46873 -4.94984 -0.45832 -0.30583 0.11098 0.68077 1.25755 1.55259 1.55876 1.76901 1.94145 2.10202 2.50311 2.60734 2.78386 3.20483 3.35880 3.41430 3.54306 3.58037 3.63551 3.69487 3.70155 3.81162 4.00367 4.14816 4.16079 4.18228 4.23444 4.27918 4.36099 4.41184 4.42182 4.49713 4.54248 4.54899 4.65673 4.67715 4.82885 4.85531 4.88666 4.92067 5.01096 5.02711 5.07417 5.17886 5.21770 5.24651 5.27827 5.32132 5.34839 5.41850 5.46017 5.48701 5.58042 5.71762 6.46788 6.53950 6.67292 6.71748 6.77046 7.24089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.095 4.095 3 C -0.059 4.059 4 C -0.180 4.180 5 C 0.555 3.445 6 O -0.563 6.563 7 N -0.709 5.709 8 C 0.143 3.857 9 H 0.061 0.939 10 C -0.114 4.114 11 C -0.105 4.105 12 C -0.039 4.039 13 H 0.135 0.865 14 C 0.410 3.590 15 N -0.549 5.549 16 C 0.171 3.829 17 C -0.318 4.318 18 C 0.510 3.490 19 O -0.592 6.592 20 N -0.613 5.613 21 C -0.091 4.091 22 C -0.121 4.121 23 C 0.163 3.837 24 O -0.492 6.492 25 C -0.155 4.155 26 C -0.084 4.084 27 O -0.547 6.547 28 Si 0.783 3.217 29 C -0.081 4.081 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.163 0.837 34 H 0.414 0.586 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.195 0.805 40 H 0.159 0.841 41 H 0.430 0.570 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.089 0.911 45 H 0.048 0.952 46 H 0.401 0.599 47 H 0.114 0.886 48 H 0.383 0.617 49 H -0.268 1.268 50 H -0.306 1.306 51 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.020 -3.725 3.508 11.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.095 4.095 3 C -0.077 4.077 4 C -0.184 4.184 5 C 0.343 3.657 6 O -0.443 6.443 7 N -0.362 5.362 8 C 0.039 3.961 9 H 0.079 0.921 10 C -0.152 4.152 11 C -0.144 4.144 12 C -0.059 4.059 13 H 0.153 0.847 14 C 0.146 3.854 15 N -0.272 5.272 16 C 0.032 3.968 17 C -0.342 4.342 18 C 0.311 3.689 19 O -0.474 6.474 20 N -0.251 5.251 21 C -0.130 4.130 22 C -0.160 4.160 23 C 0.117 3.883 24 O -0.304 6.304 25 C -0.156 4.156 26 C -0.192 4.192 27 O -0.355 6.355 28 Si 0.687 3.313 29 C -0.099 4.099 30 H 0.097 0.903 31 H 0.099 0.901 32 H 0.106 0.894 33 H 0.180 0.820 34 H 0.252 0.748 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.212 0.788 40 H 0.176 0.824 41 H 0.271 0.729 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.261 0.739 47 H 0.132 0.868 48 H 0.232 0.768 49 H -0.194 1.194 50 H -0.234 1.234 51 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.679 -4.335 2.985 10.151 hybrid contribution -0.010 1.142 -0.852 1.425 sum -8.689 -3.193 2.133 9.500 Atomic orbital electron populations 1.20920 0.88088 1.04835 1.03557 1.20108 0.98051 0.91794 0.99532 1.21441 0.90918 0.99877 0.95463 1.20461 0.95104 0.92654 1.10188 1.18295 0.86898 0.84449 0.76015 1.90821 1.15048 1.87904 1.50493 1.45840 1.10920 1.04622 1.74788 1.21050 0.95612 0.82510 0.96948 0.92084 1.21740 0.98844 0.91975 1.02652 1.21534 1.01380 0.98071 0.93451 1.20682 0.98671 0.86462 1.00105 0.84706 1.23711 0.89206 0.88149 0.84369 1.68395 1.04131 1.30670 1.24012 1.23152 1.02297 0.86218 0.85129 1.23006 0.92710 1.02338 1.16176 1.17617 0.90298 0.82879 0.78122 1.90990 1.71442 1.30342 1.54662 1.44593 1.13954 1.06869 1.59661 1.21294 0.98120 0.92030 1.01553 1.21872 1.01238 0.96605 0.96280 1.18569 0.83509 0.90897 0.95344 1.84769 1.15426 1.96072 1.34172 1.20639 0.94619 0.95032 1.05336 1.25293 1.05904 1.00185 0.87805 1.86640 1.38001 1.93509 1.17375 0.94091 0.75499 0.73200 0.88475 1.21401 0.92221 0.99775 0.96528 0.90291 0.90060 0.89414 0.81960 0.74789 0.90095 0.87831 0.91818 0.89185 0.78814 0.82380 0.72906 0.91034 0.91368 0.89267 0.93299 0.73931 0.86833 0.76841 1.19418 1.23435 0.83099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.36 10.00 71.23 0.71 2.07 16 2 C -0.09 0.62 5.87 -19.90 -0.12 0.50 16 3 C -0.06 0.35 9.18 22.52 0.21 0.55 16 4 C -0.18 -0.25 5.89 -20.01 -0.12 -0.37 16 5 C 0.56 2.21 7.73 86.69 0.67 2.88 16 6 O -0.56 -7.44 14.82 16.93 0.25 -7.18 16 7 N -0.71 3.31 5.03 -445.71 -2.24 1.07 16 8 C 0.14 -0.70 2.45 44.99 0.11 -0.59 16 9 H 0.06 0.14 7.58 -2.39 -0.02 0.12 16 10 C -0.11 1.32 5.39 30.59 0.16 1.48 16 11 C -0.11 1.08 5.19 30.60 0.16 1.23 16 12 C -0.04 0.38 2.48 -11.54 -0.03 0.35 16 13 H 0.14 -2.11 8.14 -2.39 -0.02 -2.13 16 14 C 0.41 -1.56 6.73 138.18 0.93 -0.63 16 15 N -0.55 0.11 9.11 -187.55 -1.71 -1.60 16 16 C 0.17 -0.10 11.20 83.96 0.94 0.84 16 17 C -0.32 -1.06 10.07 22.48 0.23 -0.83 16 18 C 0.51 3.52 7.75 84.88 0.66 4.18 16 19 O -0.59 -9.51 17.97 -5.26 -0.09 -9.60 16 20 N -0.61 1.25 5.25 -310.68 -1.63 -0.38 16 21 C -0.09 0.51 4.67 30.61 0.14 0.66 16 22 C -0.12 0.67 5.50 30.61 0.17 0.84 16 23 C 0.16 0.74 6.69 22.85 0.15 0.90 16 24 O -0.49 -4.31 10.91 -68.74 -0.75 -5.06 16 25 C -0.16 -0.05 5.27 -19.80 -0.10 -0.15 16 26 C -0.08 -0.06 2.37 71.23 0.17 0.11 16 27 O -0.55 -3.24 12.88 -148.98 -1.92 -5.16 16 28 Si 0.78 -2.74 30.24 68.60 2.07 -0.67 16 29 C -0.08 0.35 8.30 22.30 0.19 0.53 16 30 H 0.08 -0.92 8.14 -2.38 -0.02 -0.94 16 31 H 0.08 -1.02 8.08 -2.39 -0.02 -1.04 16 32 H 0.09 -1.25 8.08 -2.39 -0.02 -1.27 16 33 H 0.16 -2.16 6.40 -2.91 -0.02 -2.18 16 34 H 0.41 -4.86 6.63 -92.71 -0.61 -5.48 16 35 H 0.08 -0.89 8.14 -2.39 -0.02 -0.90 16 36 H 0.10 -1.72 8.14 -2.39 -0.02 -1.74 16 37 H 0.06 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.09 -1.14 8.14 -2.39 -0.02 -1.16 16 39 H 0.20 -1.24 8.06 -2.91 -0.02 -1.26 16 40 H 0.16 0.34 8.06 -2.91 -0.02 0.32 16 41 H 0.43 -3.19 8.78 -92.71 -0.81 -4.01 16 42 H 0.07 -0.35 8.14 -2.39 -0.02 -0.37 16 43 H 0.07 -0.06 7.76 -2.39 -0.02 -0.08 16 44 H 0.09 -0.88 8.14 -2.39 -0.02 -0.90 16 45 H 0.05 0.04 8.14 -2.38 -0.02 0.02 16 46 H 0.40 0.80 9.06 -74.06 -0.67 0.13 16 47 H 0.11 0.02 7.84 -2.38 -0.02 0.00 16 48 H 0.38 -0.16 8.70 -74.06 -0.64 -0.80 16 49 H -0.27 0.55 6.68 99.48 0.66 1.22 16 50 H -0.31 -1.55 7.11 99.48 0.71 -0.84 16 51 H 0.15 -1.18 4.83 -2.91 -0.01 -1.20 16 Total: 0.00 -36.39 415.87 -2.51 -38.90 By element: Atomic # 1 Polarization: -23.16 SS G_CDS: -1.72 Total: -24.88 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.23 Total: 14.55 kcal Atomic # 7 Polarization: 4.67 SS G_CDS: -5.58 Total: -0.91 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -2.51 Total: -27.00 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.07 Total: -0.67 kcal Total: -36.39 -2.51 -38.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13422088.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.421 kcal (2) G-P(sol) polarization free energy of solvation -36.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds