Wall clock time and date at job start Sat Mar 6 2021 19:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86304 * 109.47352 * 2 1 4 4 C 1.50706 * 109.47064 * 240.00610 * 2 1 3 5 5 C 1.34173 * 125.43217 * 299.96917 * 4 2 1 6 6 C 1.47023 * 105.95145 * 179.97438 * 5 4 2 7 7 C 1.47382 * 127.18960 * 180.26653 * 6 5 4 8 8 O 1.21612 * 120.00530 * 359.70351 * 7 6 5 9 9 N 1.34780 * 119.99797 * 179.70849 * 7 6 5 10 10 C 1.46497 * 119.99994 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.47160 * 324.99979 * 10 9 7 12 12 C 1.53003 * 109.47002 * 85.00191 * 10 9 7 13 13 C 1.52997 * 109.47270 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47138 * 300.00004 * 13 12 10 15 15 H 1.08999 * 109.46883 * 299.99789 * 14 13 12 16 16 C 1.50703 * 109.47595 * 179.97438 * 14 13 12 17 17 N 1.30636 * 119.25167 * 265.00134 * 16 14 13 18 18 C 1.33521 * 121.50008 * 179.97438 * 17 16 14 19 19 C 1.36194 * 119.91493 * 0.02562 * 18 17 16 20 20 C 1.41031 * 118.59160 * 359.97438 * 19 18 17 21 21 O 1.21980 * 120.70740 * 180.02562 * 20 19 18 22 22 N 1.34751 * 119.25303 * 84.72073 * 16 14 13 23 23 C 1.53001 * 109.47381 * 60.00006 * 14 13 12 24 24 C 1.52994 * 109.47358 * 204.99775 * 10 9 7 25 25 C 1.36415 * 105.61588 * 0.02562 * 6 5 4 26 26 O 1.33646 * 108.39797 * 359.97438 * 25 6 5 27 27 H 0.96697 * 114.00528 * 59.99857 * 1 2 3 28 28 H 1.09005 * 109.47654 * 120.00285 * 2 1 3 29 29 H 1.48501 * 110.00140 * 298.68802 * 3 2 1 30 30 H 1.48503 * 109.99817 * 60.00057 * 3 2 1 31 31 H 1.08005 * 127.02639 * 0.02562 * 5 4 2 32 32 H 0.96999 * 120.00179 * 0.02562 * 9 7 6 33 33 H 1.09002 * 109.47101 * 299.99729 * 12 10 9 34 34 H 1.08999 * 109.47336 * 59.99897 * 12 10 9 35 35 H 1.09001 * 109.47597 * 179.97438 * 13 12 10 36 36 H 1.08999 * 109.47061 * 59.99684 * 13 12 10 37 37 H 1.08000 * 120.04189 * 180.02562 * 18 17 16 38 38 H 1.07995 * 120.70956 * 180.02562 * 19 18 17 39 39 H 0.97003 * 120.04020 * 0.02562 * 22 16 14 40 40 H 1.08998 * 109.46990 * 180.02562 * 23 14 13 41 41 H 1.08999 * 109.47289 * 60.00032 * 23 14 13 42 42 H 1.09002 * 109.47598 * 300.00821 * 24 10 9 43 43 H 1.09008 * 109.47221 * 60.00258 * 24 10 9 44 44 H 1.08003 * 125.79830 * 180.02562 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7103 -1.2306 5 6 1.6757 -1.9882 -1.5499 6 6 2.3681 -2.2326 -2.8237 7 6 2.3925 -3.4863 -3.5981 8 8 1.7977 -4.4652 -3.1896 9 7 3.0742 -3.5480 -4.7592 10 6 3.0990 -4.7943 -5.5287 11 1 3.1041 -5.6433 -4.8452 12 6 1.8592 -4.8666 -6.4224 13 6 1.8847 -6.1685 -7.2257 14 6 3.1430 -6.2068 -8.0951 15 1 3.1381 -5.3580 -8.7790 16 6 3.1685 -7.4894 -8.8859 17 7 3.8321 -8.5136 -8.4197 18 6 3.8842 -9.6714 -9.0828 19 6 3.2363 -9.8020 -10.2736 20 6 2.5199 -8.6964 -10.7769 21 8 1.9252 -8.7708 -11.8393 22 7 2.5017 -7.5556 -10.0550 23 6 4.3828 -6.1345 -7.2015 24 6 4.3572 -4.8319 -6.3982 25 6 2.9787 -1.0549 -3.1416 26 8 2.7055 -0.1656 -2.1820 27 1 -0.3934 0.4417 -0.7650 28 1 1.7924 -0.5139 0.8900 29 1 1.5878 2.4587 -1.2241 30 1 1.5615 2.4679 1.2085 31 1 1.0818 -2.6930 -0.9869 32 1 3.5490 -2.7674 -5.0849 33 1 0.9627 -4.8398 -5.8030 34 1 1.8540 -4.0175 -7.1060 35 1 1.0012 -6.2202 -7.8621 36 1 1.8896 -7.0172 -6.5419 37 1 4.4396 -10.5033 -8.6753 38 1 3.2695 -10.7327 -10.8204 39 1 2.0127 -6.7832 -10.3795 40 1 5.2793 -6.1614 -7.8210 41 1 4.3878 -6.9833 -6.5176 42 1 4.3522 -3.9829 -7.0818 43 1 5.2406 -4.7805 -5.7616 44 1 3.5799 -0.8719 -4.0200 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_13456056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:19 Heat of formation + Delta-G solvation = -53.539604 kcal Electronic energy + Delta-G solvation = -29260.691203 eV Core-core repulsion = 24953.282494 eV Total energy + Delta-G solvation = -4307.408710 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.68396 -42.89644 -40.94385 -39.53440 -38.44976 -38.15816 -35.86882 -35.18733 -33.96962 -32.62512 -31.84549 -31.66547 -30.02603 -26.78401 -26.01274 -25.48778 -24.49245 -23.71300 -22.49389 -22.25375 -21.23934 -20.53611 -19.77273 -19.37073 -19.09907 -17.93914 -17.78741 -17.54242 -17.32007 -17.15112 -17.03718 -16.25690 -16.06930 -15.88531 -15.69630 -15.62167 -15.25664 -15.09600 -14.81505 -14.44087 -14.21216 -14.08302 -13.97828 -13.94957 -13.57744 -13.38274 -13.15177 -12.94012 -12.50692 -12.33601 -12.13645 -12.11500 -12.02984 -11.59543 -11.39618 -11.32884 -11.13391 -11.07181 -10.95574 -10.74740 -10.11025 -9.74448 -9.67003 -4.90329 -0.45510 0.31266 0.67829 0.83805 1.20270 1.55405 1.56267 1.77002 1.97611 2.09428 2.30044 2.50173 2.78525 3.21938 3.41396 3.51459 3.58054 3.60956 3.66229 3.72846 3.98565 4.02100 4.16714 4.17644 4.29895 4.35232 4.37993 4.41550 4.47643 4.50270 4.53417 4.54443 4.68824 4.85014 4.88616 4.93520 5.03221 5.08766 5.15313 5.18539 5.24560 5.33428 5.35365 5.43276 5.47780 5.58399 5.86299 6.35513 6.55162 6.66620 6.71047 7.22458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.540 6.540 2 C -0.047 4.047 3 Si 0.794 3.206 4 C -0.051 4.051 5 C -0.154 4.154 6 C -0.270 4.270 7 C 0.586 3.414 8 O -0.587 6.587 9 N -0.705 5.705 10 C 0.143 3.857 11 H 0.063 0.937 12 C -0.121 4.121 13 C -0.104 4.104 14 C -0.039 4.039 15 H 0.135 0.865 16 C 0.409 3.591 17 N -0.545 5.545 18 C 0.173 3.827 19 C -0.319 4.319 20 C 0.509 3.491 21 O -0.593 6.593 22 N -0.615 5.615 23 C -0.093 4.093 24 C -0.116 4.116 25 C 0.068 3.932 26 O -0.165 6.165 27 H 0.390 0.610 28 H 0.147 0.853 29 H -0.286 1.286 30 H -0.290 1.290 31 H 0.141 0.859 32 H 0.417 0.583 33 H 0.046 0.954 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.198 0.802 38 H 0.158 0.842 39 H 0.429 0.571 40 H 0.083 0.917 41 H 0.072 0.928 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.852 7.676 0.416 10.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.349 6.349 2 C -0.155 4.155 3 Si 0.697 3.303 4 C -0.099 4.099 5 C -0.174 4.174 6 C -0.274 4.274 7 C 0.375 3.625 8 O -0.468 6.468 9 N -0.356 5.356 10 C 0.039 3.961 11 H 0.081 0.919 12 C -0.159 4.159 13 C -0.144 4.144 14 C -0.059 4.059 15 H 0.152 0.848 16 C 0.145 3.855 17 N -0.268 5.268 18 C 0.033 3.967 19 C -0.343 4.343 20 C 0.310 3.690 21 O -0.476 6.476 22 N -0.252 5.252 23 C -0.132 4.132 24 C -0.154 4.154 25 C -0.003 4.003 26 O -0.060 6.060 27 H 0.240 0.760 28 H 0.164 0.836 29 H -0.212 1.212 30 H -0.217 1.217 31 H 0.159 0.841 32 H 0.255 0.745 33 H 0.065 0.935 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.214 0.786 38 H 0.176 0.824 39 H 0.269 0.731 40 H 0.102 0.898 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.102 0.898 44 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 7.557 7.473 1.318 10.710 hybrid contribution -2.105 -0.599 -1.533 2.672 sum 5.453 6.875 -0.214 8.777 Atomic orbital electron populations 1.86650 1.17572 1.80592 1.50040 1.24704 0.83433 1.13338 0.94000 0.93454 0.89772 0.70187 0.76935 1.22651 0.99730 0.93482 0.94069 1.22555 1.02260 0.96080 0.96468 1.21511 1.09905 0.96110 0.99919 1.17512 0.78040 0.86262 0.80697 1.90798 1.46383 1.38675 1.70976 1.45714 1.52506 1.15951 1.21452 1.21068 0.96250 0.86254 0.92562 0.91886 1.21830 0.97596 0.98185 0.98310 1.21492 0.96117 0.98548 0.98203 1.20685 0.98366 0.90014 0.96849 0.84770 1.23748 0.83155 0.96839 0.81793 1.68393 1.23911 1.00327 1.34141 1.23175 0.90005 0.94657 0.88825 1.23003 1.08093 1.01036 1.02206 1.17659 0.82603 0.84156 0.84624 1.90988 1.48894 1.83512 1.24232 1.44628 1.43754 1.16974 1.19877 1.21348 0.95735 0.98079 0.98021 1.21803 0.95944 0.99100 0.98532 1.25365 0.97154 0.85147 0.92592 1.83715 1.54256 1.40168 1.27883 0.75953 0.83573 1.21206 1.21695 0.84146 0.74468 0.93502 0.88785 0.90537 0.92119 0.78553 0.82403 0.73067 0.89793 0.90948 0.88194 0.89812 0.71826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.63 12.86 -148.98 -1.92 -2.54 16 2 C -0.05 0.11 2.98 71.24 0.21 0.32 16 3 Si 0.79 -3.44 32.09 68.60 2.20 -1.24 16 4 C -0.05 0.04 6.20 24.76 0.15 0.19 16 5 C -0.15 -0.59 10.88 23.65 0.26 -0.34 16 6 C -0.27 -0.05 6.31 -18.99 -0.12 -0.17 16 7 C 0.59 1.82 7.78 86.65 0.67 2.49 16 8 O -0.59 -8.17 16.65 -4.07 -0.07 -8.24 16 9 N -0.70 4.60 5.07 -445.85 -2.26 2.34 16 10 C 0.14 -0.86 2.45 44.99 0.11 -0.75 16 11 H 0.06 0.06 7.58 -2.39 -0.02 0.04 16 12 C -0.12 0.77 5.49 30.59 0.17 0.94 16 13 C -0.10 0.74 5.19 30.59 0.16 0.90 16 14 C -0.04 0.39 2.48 -11.54 -0.03 0.37 16 15 H 0.13 -2.15 8.14 -2.39 -0.02 -2.16 16 16 C 0.41 -1.69 6.73 138.18 0.93 -0.76 16 17 N -0.54 0.77 9.11 -187.56 -1.71 -0.94 16 18 C 0.17 -0.26 11.20 83.96 0.94 0.68 16 19 C -0.32 -0.99 10.07 22.48 0.23 -0.76 16 20 C 0.51 3.67 7.75 84.89 0.66 4.32 16 21 O -0.59 -9.88 17.97 -5.25 -0.09 -9.97 16 22 N -0.61 0.96 5.25 -310.69 -1.63 -0.67 16 23 C -0.09 0.92 4.67 30.61 0.14 1.06 16 24 C -0.12 1.43 5.39 30.61 0.17 1.60 16 25 C 0.07 -0.56 11.61 67.39 0.78 0.23 16 26 O -0.16 0.72 8.89 4.51 0.04 0.76 16 27 H 0.39 -1.82 8.70 -74.06 -0.64 -2.47 16 28 H 0.15 -0.69 7.96 -2.38 -0.02 -0.71 16 29 H -0.29 -0.15 7.11 99.48 0.71 0.56 16 30 H -0.29 -0.68 7.11 99.48 0.71 0.02 16 31 H 0.14 1.02 8.06 -2.91 -0.02 1.00 16 32 H 0.42 -6.28 7.57 -92.71 -0.70 -6.98 16 33 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.09 -1.04 8.14 -2.39 -0.02 -1.06 16 35 H 0.08 -0.60 8.14 -2.39 -0.02 -0.62 16 36 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 37 H 0.20 -1.51 8.06 -2.91 -0.02 -1.53 16 38 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 39 H 0.43 -2.73 8.78 -92.71 -0.81 -3.54 16 40 H 0.08 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.07 -0.41 7.75 -2.39 -0.02 -0.43 16 42 H 0.10 -1.72 8.14 -2.39 -0.02 -1.74 16 43 H 0.08 -1.02 8.14 -2.38 -0.02 -1.04 16 44 H 0.27 -5.36 7.47 -2.91 -0.02 -5.38 16 Total: 0.00 -35.94 374.41 -1.06 -37.00 By element: Atomic # 1 Polarization: -25.76 SS G_CDS: -1.05 Total: -26.81 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: 5.43 Total: 10.32 kcal Atomic # 7 Polarization: 6.33 SS G_CDS: -5.60 Total: 0.73 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -2.04 Total: -19.99 kcal Atomic # 14 Polarization: -3.44 SS G_CDS: 2.20 Total: -1.24 kcal Total: -35.94 -1.06 -37.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_13456056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.541 kcal (2) G-P(sol) polarization free energy of solvation -35.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds