Wall clock time and date at job start Sat Mar 6 2021 19:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86299 * 109.47304 * 2 1 4 4 C 1.50696 * 109.47249 * 120.00343 * 2 1 3 5 5 C 1.31113 * 118.54739 * 249.98077 * 4 2 1 6 6 N 1.38925 * 121.85190 * 179.61635 * 5 4 2 7 7 C 1.47031 * 118.88017 * 13.31083 * 6 5 4 8 8 C 1.50700 * 109.81964 * 196.79722 * 7 6 5 9 9 O 1.21280 * 119.99833 * 18.21029 * 8 7 6 10 10 N 1.34776 * 119.99913 * 198.20916 * 8 7 6 11 11 C 1.46502 * 120.00070 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.46814 * 325.00568 * 11 10 8 13 13 C 1.53002 * 109.46541 * 85.00051 * 11 10 8 14 14 C 1.53009 * 109.46578 * 179.97438 * 13 11 10 15 15 C 1.52994 * 109.47108 * 300.00077 * 14 13 11 16 16 H 1.08996 * 109.47682 * 299.99884 * 15 14 13 17 17 C 1.50709 * 109.46886 * 180.02562 * 15 14 13 18 18 N 1.30634 * 119.25300 * 264.97796 * 17 15 14 19 19 C 1.33526 * 121.50817 * 180.02562 * 18 17 15 20 20 C 1.36195 * 119.90299 * 0.02562 * 19 18 17 21 21 C 1.41025 * 118.59791 * 359.97438 * 20 19 18 22 22 O 1.21982 * 120.70775 * 180.02562 * 21 20 19 23 23 N 1.34746 * 119.25562 * 84.99965 * 17 15 14 24 24 C 1.53002 * 109.47464 * 60.00466 * 15 14 13 25 25 C 1.52996 * 109.47402 * 204.99904 * 11 10 8 26 26 C 1.53541 * 107.66093 * 316.33854 * 7 6 5 27 27 C 1.50205 * 118.54498 * 69.99891 * 4 2 1 28 28 H 0.96698 * 114.00214 * 299.99806 * 1 2 3 29 29 H 1.09007 * 109.47257 * 240.00169 * 2 1 3 30 30 H 1.48498 * 109.99865 * 300.00367 * 3 2 1 31 31 H 1.48505 * 109.99597 * 61.31644 * 3 2 1 32 32 H 1.08005 * 119.07019 * 359.63300 * 5 4 2 33 33 H 0.96991 * 120.55802 * 193.33683 * 6 5 4 34 34 H 1.09005 * 109.87292 * 75.91188 * 7 6 5 35 35 H 0.97001 * 119.99903 * 0.02562 * 10 8 7 36 36 H 1.08994 * 109.47362 * 299.99839 * 13 11 10 37 37 H 1.08996 * 109.47145 * 60.00719 * 13 11 10 38 38 H 1.09000 * 109.47018 * 180.02562 * 14 13 11 39 39 H 1.09004 * 109.46864 * 60.00251 * 14 13 11 40 40 H 1.07999 * 120.04371 * 180.02562 * 19 18 17 41 41 H 1.08003 * 120.69776 * 180.27226 * 20 19 18 42 42 H 0.97006 * 120.03713 * 359.95583 * 23 17 15 43 43 H 1.08996 * 109.47145 * 59.99090 * 24 15 14 44 44 H 1.08994 * 109.47362 * 179.97438 * 24 15 14 45 45 H 1.09000 * 109.46803 * 60.00197 * 25 11 10 46 46 H 1.09003 * 109.47272 * 300.00636 * 25 11 10 47 47 H 1.09002 * 109.62221 * 180.67043 * 26 7 6 48 48 H 1.08997 * 109.62248 * 301.04069 * 26 7 6 49 49 H 1.08998 * 109.32977 * 79.77802 * 27 4 2 50 50 H 1.08997 * 109.19092 * 320.20146 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9313 -0.7105 1.2304 5 6 2.5119 -0.0030 2.1693 6 7 2.9931 -0.5860 3.3348 7 6 3.1184 -2.0497 3.3974 8 6 3.2526 -2.4901 4.8324 9 8 2.9219 -1.7437 5.7292 10 7 3.7401 -3.7135 5.1189 11 6 3.8711 -4.1415 6.5139 12 1 4.1413 -3.2858 7.1326 13 6 2.5395 -4.7198 6.9970 14 6 2.6765 -5.1674 8.4537 15 6 3.7652 -6.2373 8.5583 16 1 3.4947 -7.0927 7.9393 17 6 3.8996 -6.6786 9.9930 18 7 4.8063 -6.1207 10.7502 19 6 4.9648 -6.4774 12.0271 20 6 4.1706 -7.4438 12.5657 21 6 3.1917 -8.0462 11.7485 22 8 2.4594 -8.9153 12.1915 23 7 3.0822 -7.6399 10.4657 24 6 5.0968 -5.6589 8.0752 25 6 4.9599 -5.2112 6.6191 26 6 1.8463 -2.6527 2.7845 27 6 1.7451 -2.1978 1.3267 28 1 -0.3933 0.4417 0.7650 29 1 1.7924 -0.5138 -0.8900 30 1 1.5615 2.4679 -1.2084 31 1 1.5878 2.4585 1.2243 32 1 2.6189 1.0630 2.0327 33 1 3.2419 -0.0368 4.0946 34 1 3.9911 -2.3715 2.8290 35 1 4.0049 -4.3103 4.4016 36 1 1.7638 -3.9578 6.9221 37 1 2.2693 -5.5755 6.3783 38 1 1.7280 -5.5799 8.7978 39 1 2.9470 -4.3120 9.0727 40 1 5.7218 -6.0002 12.6318 41 1 4.2848 -7.7392 13.5983 42 1 2.4160 -8.0396 9.8848 43 1 5.3672 -4.8035 8.6942 44 1 5.8724 -6.4210 8.1501 45 1 5.9085 -4.7991 6.2749 46 1 4.6896 -6.0669 6.0003 47 1 1.9004 -3.7406 2.8255 48 1 0.9738 -2.3084 3.3396 49 1 2.5156 -2.6967 0.7388 50 1 0.7635 -2.4622 0.9336 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_15413834.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:29 Heat of formation + Delta-G solvation = -52.555145 kcal Electronic energy + Delta-G solvation = -32111.062768 eV Core-core repulsion = 27718.566312 eV Total energy + Delta-G solvation = -4392.496456 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.90319 -41.48007 -40.08723 -39.31527 -38.46587 -37.43583 -35.87319 -35.17877 -33.22894 -33.16651 -32.31328 -31.77732 -30.16325 -27.48792 -25.85050 -25.48549 -25.13474 -23.71826 -23.66367 -22.66319 -21.52438 -20.88497 -19.77967 -19.38105 -19.21345 -18.98882 -18.02538 -17.80626 -17.40404 -17.08343 -16.82038 -16.41513 -16.00270 -15.97557 -15.67721 -15.63939 -15.46970 -15.23202 -15.15190 -14.90126 -14.50568 -14.42324 -14.13906 -14.06080 -13.89067 -13.83970 -13.41255 -13.15460 -13.12591 -12.87778 -12.48916 -12.33962 -12.31230 -12.11198 -12.03388 -11.92070 -11.65694 -11.58878 -11.38614 -11.30567 -11.19696 -11.09273 -10.79630 -10.30043 -10.06981 -9.67514 -8.42904 -4.90028 -0.45989 0.67286 1.37301 1.42166 1.52651 1.55600 1.58811 1.95669 2.00865 2.49613 2.67410 2.78651 3.40551 3.53315 3.58703 3.64576 3.69027 3.72045 3.81539 3.90843 3.99850 4.10925 4.17195 4.18374 4.29695 4.36250 4.37748 4.41420 4.49568 4.51240 4.53370 4.65189 4.67298 4.69408 4.84298 4.85195 4.88092 5.02500 5.08591 5.09110 5.18031 5.24508 5.25825 5.32295 5.34138 5.34977 5.44096 5.47344 5.57910 5.62257 6.28866 6.54063 6.62103 6.66064 6.70357 6.84259 7.20243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.056 4.056 3 Si 0.746 3.254 4 C -0.281 4.281 5 C 0.137 3.863 6 N -0.737 5.737 7 C 0.137 3.863 8 C 0.513 3.487 9 O -0.576 6.576 10 N -0.706 5.706 11 C 0.144 3.856 12 H 0.065 0.935 13 C -0.120 4.120 14 C -0.104 4.104 15 C -0.039 4.039 16 H 0.133 0.867 17 C 0.409 3.591 18 N -0.544 5.544 19 C 0.173 3.827 20 C -0.319 4.319 21 C 0.509 3.491 22 O -0.593 6.593 23 N -0.615 5.615 24 C -0.093 4.093 25 C -0.117 4.117 26 C -0.120 4.120 27 C -0.054 4.054 28 H 0.380 0.620 29 H 0.115 0.885 30 H -0.313 1.313 31 H -0.291 1.291 32 H 0.139 0.861 33 H 0.406 0.594 34 H 0.118 0.882 35 H 0.420 0.580 36 H 0.049 0.951 37 H 0.091 0.909 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.198 0.802 41 H 0.158 0.842 42 H 0.428 0.572 43 H 0.073 0.927 44 H 0.081 0.919 45 H 0.082 0.918 46 H 0.096 0.904 47 H 0.103 0.897 48 H 0.049 0.951 49 H 0.085 0.915 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.072 -1.779 -5.227 8.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.365 6.365 2 C -0.166 4.166 3 Si 0.655 3.345 4 C -0.291 4.291 5 C 0.016 3.984 6 N -0.369 5.369 7 C 0.028 3.972 8 C 0.299 3.701 9 O -0.455 6.455 10 N -0.358 5.358 11 C 0.039 3.961 12 H 0.083 0.917 13 C -0.159 4.159 14 C -0.144 4.144 15 C -0.060 4.060 16 H 0.150 0.850 17 C 0.144 3.856 18 N -0.268 5.268 19 C 0.034 3.966 20 C -0.344 4.344 21 C 0.309 3.691 22 O -0.476 6.476 23 N -0.253 5.253 24 C -0.132 4.132 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.091 4.091 28 H 0.229 0.771 29 H 0.133 0.867 30 H -0.242 1.242 31 H -0.219 1.219 32 H 0.156 0.844 33 H 0.242 0.758 34 H 0.136 0.864 35 H 0.257 0.743 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.093 0.907 39 H 0.080 0.920 40 H 0.215 0.785 41 H 0.176 0.824 42 H 0.269 0.731 43 H 0.091 0.909 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.115 0.885 47 H 0.121 0.879 48 H 0.068 0.932 49 H 0.103 0.897 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.979 -0.792 -4.881 8.554 hybrid contribution -2.108 -0.590 1.129 2.464 sum 4.871 -1.382 -3.752 6.302 Atomic orbital electron populations 1.86540 1.19879 1.80176 1.49926 1.24825 0.82505 1.09777 0.99533 0.94570 0.90960 0.73686 0.75315 1.20913 1.11271 0.97378 0.99534 1.20581 0.93992 0.97165 0.86699 1.44401 1.72360 1.04873 1.15291 1.21159 1.01012 0.82780 0.92213 1.20853 0.76166 0.82043 0.91057 1.90731 1.50414 1.54816 1.49499 1.45883 1.64447 1.15949 1.09492 1.21036 0.95700 0.97565 0.81795 0.91661 1.21823 0.97124 1.01346 0.95568 1.21494 0.97669 0.97719 0.97476 1.20686 0.99118 1.00838 0.85309 0.84972 1.23759 0.82947 0.81586 0.97272 1.68389 1.21496 1.29956 1.06918 1.23178 0.94135 0.89274 0.90061 1.23003 1.02088 1.05481 1.03779 1.17662 0.85845 0.83625 0.81930 1.90990 1.48211 1.34811 1.73606 1.44632 1.33096 1.33693 1.13840 1.21321 0.94386 1.02038 0.95412 1.21775 0.98270 0.98313 0.97126 1.21815 0.95559 1.01829 0.96628 1.19986 1.02372 0.91652 0.95132 0.77097 0.86693 1.24176 1.21909 0.84441 0.75802 0.86434 0.74276 0.93237 0.88997 0.90654 0.92029 0.78529 0.82408 0.73086 0.90867 0.90021 0.89900 0.88535 0.87888 0.93193 0.89713 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -2.17 12.88 -148.98 -1.92 -4.08 16 2 C -0.06 0.02 2.81 71.23 0.20 0.22 16 3 Si 0.75 -0.68 29.95 68.60 2.05 1.37 16 4 C -0.28 0.49 5.37 -16.76 -0.09 0.40 16 5 C 0.14 -0.27 9.62 83.42 0.80 0.54 16 6 N -0.74 1.28 5.47 -328.99 -1.80 -0.52 16 7 C 0.14 -0.74 3.36 44.33 0.15 -0.59 16 8 C 0.51 -1.26 7.06 87.66 0.62 -0.65 16 9 O -0.58 -4.05 15.72 -3.03 -0.05 -4.10 16 10 N -0.71 6.56 5.08 -442.54 -2.25 4.32 16 11 C 0.14 -1.16 2.46 44.99 0.11 -1.05 16 12 H 0.07 -0.11 7.58 -2.39 -0.02 -0.13 16 13 C -0.12 0.97 5.50 30.60 0.17 1.14 16 14 C -0.10 0.86 5.19 30.60 0.16 1.02 16 15 C -0.04 0.42 2.48 -11.54 -0.03 0.39 16 16 H 0.13 -2.13 8.14 -2.39 -0.02 -2.15 16 17 C 0.41 -1.87 6.73 138.19 0.93 -0.94 16 18 N -0.54 1.05 9.12 -187.55 -1.71 -0.66 16 19 C 0.17 -0.34 11.20 83.96 0.94 0.60 16 20 C -0.32 -0.88 10.07 22.48 0.23 -0.65 16 21 C 0.51 3.51 7.75 84.89 0.66 4.17 16 22 O -0.59 -9.72 17.97 -5.26 -0.09 -9.82 16 23 N -0.62 1.15 5.25 -310.70 -1.63 -0.48 16 24 C -0.09 0.97 4.67 30.58 0.14 1.12 16 25 C -0.12 1.53 5.39 30.58 0.16 1.69 16 26 C -0.12 0.63 5.47 30.79 0.17 0.80 16 27 C -0.05 0.20 5.85 29.71 0.17 0.37 16 28 H 0.38 -0.33 8.70 -74.06 -0.64 -0.97 16 29 H 0.12 -0.21 7.96 -2.38 -0.02 -0.23 16 30 H -0.31 -2.44 7.11 99.48 0.71 -1.74 16 31 H -0.29 -0.95 6.84 99.48 0.68 -0.27 16 32 H 0.14 -0.49 4.30 -2.91 -0.01 -0.50 16 33 H 0.41 -0.11 8.08 -92.71 -0.75 -0.86 16 34 H 0.12 -1.21 8.14 -2.38 -0.02 -1.22 16 35 H 0.42 -6.66 8.60 -92.71 -0.80 -7.46 16 36 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.09 -1.11 8.14 -2.39 -0.02 -1.13 16 38 H 0.07 -0.65 8.14 -2.39 -0.02 -0.67 16 39 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 40 H 0.20 -1.61 8.06 -2.91 -0.02 -1.63 16 41 H 0.16 0.26 8.06 -2.91 -0.02 0.24 16 42 H 0.43 -2.83 8.78 -92.70 -0.81 -3.65 16 43 H 0.07 -0.48 7.76 -2.39 -0.02 -0.50 16 44 H 0.08 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.08 -1.06 8.14 -2.39 -0.02 -1.08 16 46 H 0.10 -1.65 8.14 -2.39 -0.02 -1.67 16 47 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 48 H 0.05 0.01 8.14 -2.39 -0.02 -0.01 16 49 H 0.08 -0.58 8.14 -2.39 -0.02 -0.60 16 50 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 Total: 0.00 -30.17 400.07 -3.88 -34.06 By element: Atomic # 1 Polarization: -26.69 SS G_CDS: -1.99 Total: -28.68 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 5.49 Total: 8.58 kcal Atomic # 7 Polarization: 10.05 SS G_CDS: -7.39 Total: 2.66 kcal Atomic # 8 Polarization: -15.94 SS G_CDS: -2.06 Total: -18.00 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: 2.05 Total: 1.37 kcal Total: -30.17 -3.88 -34.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_15413834.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.498 kcal (2) G-P(sol) polarization free energy of solvation -30.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds