Wall clock time and date at job start Sat Mar 6 2021 19:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86307 * 109.46967 * 2 1 4 4 C 1.50695 * 109.47032 * 119.99945 * 2 1 3 5 5 C 1.31118 * 118.54861 * 249.97680 * 4 2 1 6 6 N 1.38921 * 121.84994 * 180.42533 * 5 4 2 7 7 C 1.47027 * 118.88257 * 346.69485 * 6 5 4 8 8 C 1.53540 * 107.66092 * 43.66064 * 7 6 5 9 9 C 1.50208 * 118.54759 * 70.00337 * 4 2 1 10 10 C 1.50708 * 109.32847 * 39.66514 * 9 4 2 11 11 O 1.21277 * 119.99828 * 120.86265 * 10 9 4 12 12 N 1.34773 * 119.99598 * 300.86252 * 10 9 4 13 13 C 1.46506 * 119.99759 * 180.02562 * 12 10 9 14 14 H 1.08997 * 109.47152 * 35.00409 * 13 12 10 15 15 C 1.53001 * 109.46915 * 155.00125 * 13 12 10 16 16 C 1.52999 * 109.47020 * 180.02562 * 15 13 12 17 17 C 1.53004 * 109.46866 * 299.99635 * 16 15 13 18 18 H 1.08989 * 109.47434 * 300.00060 * 17 16 15 19 19 C 1.50699 * 109.46964 * 179.97438 * 17 16 15 20 20 N 1.30641 * 119.25668 * 335.00441 * 19 17 16 21 21 C 1.33524 * 121.50686 * 179.97438 * 20 19 17 22 22 C 1.36202 * 119.90626 * 0.25495 * 21 20 19 23 23 C 1.41025 * 118.59693 * 359.53081 * 22 21 20 24 24 O 1.21976 * 120.70763 * 180.19710 * 23 22 21 25 25 N 1.34749 * 119.25199 * 155.02414 * 19 17 16 26 26 C 1.53001 * 109.47003 * 60.00355 * 17 16 15 27 27 C 1.52997 * 109.46818 * 274.99899 * 13 12 10 28 28 H 0.96698 * 113.99857 * 299.99323 * 1 2 3 29 29 H 1.09000 * 109.47319 * 240.00320 * 2 1 3 30 30 H 1.48498 * 109.99786 * 300.00296 * 3 2 1 31 31 H 1.48497 * 109.99515 * 61.32011 * 3 2 1 32 32 H 1.07997 * 119.07008 * 0.43408 * 5 4 2 33 33 H 0.96999 * 120.55894 * 166.70664 * 6 5 4 34 34 H 1.09004 * 109.82017 * 284.11471 * 7 6 5 35 35 H 1.09007 * 109.87193 * 163.22634 * 7 6 5 36 36 H 1.09006 * 109.62163 * 179.33118 * 8 7 6 37 37 H 1.08994 * 109.62399 * 58.77637 * 8 7 6 38 38 H 1.09004 * 109.19011 * 280.09618 * 9 4 2 39 39 H 0.97001 * 120.00324 * 359.97438 * 12 10 9 40 40 H 1.09002 * 109.47402 * 60.00046 * 15 13 12 41 41 H 1.09001 * 109.47210 * 299.99502 * 15 13 12 42 42 H 1.09000 * 109.47388 * 179.97438 * 16 15 13 43 43 H 1.09002 * 109.47150 * 59.99703 * 16 15 13 44 44 H 1.08002 * 120.04250 * 179.97438 * 21 20 19 45 45 H 1.07998 * 120.69916 * 179.72399 * 22 21 20 46 46 H 0.96998 * 120.04223 * 0.02562 * 25 19 17 47 47 H 1.09002 * 109.47402 * 59.99694 * 26 17 16 48 48 H 1.08995 * 109.47189 * 179.97438 * 26 17 16 49 49 H 1.09002 * 109.47357 * 299.99866 * 27 13 12 50 50 H 1.08998 * 109.47611 * 60.00233 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2304 5 6 2.5120 -0.0029 2.1693 6 7 3.0079 -0.5882 3.3275 7 6 2.6239 -1.9716 3.6446 8 6 2.7183 -2.7899 2.3489 9 6 1.7452 -2.1978 1.3268 10 6 1.9984 -2.8206 -0.0219 11 8 2.8699 -3.6542 -0.1509 12 7 1.2564 -2.4513 -1.0847 13 6 1.5022 -3.0572 -2.3957 14 1 1.7908 -4.1001 -2.2656 15 6 0.2278 -2.9821 -3.2391 16 6 0.4843 -3.6154 -4.6081 17 6 1.6101 -2.8596 -5.3168 18 1 1.3217 -1.8167 -5.4472 19 6 1.8631 -3.4838 -6.6649 20 7 1.5492 -4.7372 -6.8572 21 6 1.7533 -5.3352 -8.0335 22 6 2.3055 -4.6361 -9.0639 23 6 2.6401 -3.2817 -8.8580 24 8 3.1331 -2.6186 -9.7552 25 7 2.4085 -2.7364 -7.6446 26 6 2.8845 -2.9346 -4.4734 27 6 2.6278 -2.3008 -3.1041 28 1 -0.3933 0.4416 0.7651 29 1 1.7924 -0.5138 -0.8900 30 1 1.5614 2.4679 -1.2085 31 1 1.5879 2.4585 1.2243 32 1 2.6073 1.0649 2.0385 33 1 3.5974 -0.0925 3.9171 34 1 1.6016 -1.9940 4.0224 35 1 3.3030 -2.3826 4.3917 36 1 2.4507 -3.8271 2.5507 37 1 3.7345 -2.7406 1.9581 38 1 0.7222 -2.4115 1.6366 39 1 0.5592 -1.7848 -0.9814 40 1 -0.0609 -1.9391 -3.3693 41 1 -0.5741 -3.5209 -2.7345 42 1 -0.4237 -3.5624 -5.2088 43 1 0.7728 -4.6584 -4.4776 44 1 1.4852 -6.3729 -8.1663 45 1 2.4803 -5.1083 -10.0193 46 1 2.6341 -1.8078 -7.4785 47 1 3.1730 -3.9777 -4.3429 48 1 3.6866 -2.3966 -4.9784 49 1 2.3391 -1.2578 -3.2342 50 1 3.5357 -2.3542 -2.5033 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_13456076_15608500.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 19:58:33 Heat of formation + Delta-G solvation = -41.190191 kcal Electronic energy + Delta-G solvation = -33507.961247 eV Core-core repulsion = 29115.957613 eV Total energy + Delta-G solvation = -4392.003634 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.183 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.89412 -41.64654 -40.00310 -39.13302 -38.40338 -37.67061 -35.80059 -35.08541 -33.55464 -32.70056 -32.31776 -31.77755 -30.08672 -27.27678 -26.25169 -25.59100 -25.01638 -23.70511 -23.24078 -22.67283 -21.51083 -20.86069 -19.76390 -19.31854 -19.16224 -18.90343 -17.99775 -17.78320 -17.44149 -17.13100 -17.03313 -16.45841 -16.05627 -15.89539 -15.63607 -15.57235 -15.49007 -15.18675 -14.85703 -14.83996 -14.54144 -14.40796 -14.09314 -14.05887 -13.99104 -13.69657 -13.37735 -13.13248 -13.12525 -12.62704 -12.49133 -12.34858 -12.23130 -12.10975 -12.02326 -11.89586 -11.65245 -11.56210 -11.38524 -11.33382 -11.24548 -11.08199 -10.67599 -10.38797 -9.83359 -9.66187 -8.42563 -4.85406 -0.45154 0.68422 1.27766 1.39135 1.56274 1.59337 1.79256 2.00195 2.34260 2.50865 2.68631 2.78963 3.41242 3.44361 3.58490 3.67064 3.72116 3.72961 3.88442 3.98366 4.02476 4.17699 4.20078 4.25436 4.30585 4.35010 4.37036 4.40880 4.43674 4.50792 4.53271 4.63996 4.69956 4.75505 4.82695 4.83667 4.87744 4.89652 5.04795 5.09570 5.18061 5.23388 5.24314 5.30305 5.33956 5.35740 5.45472 5.47807 5.49666 5.65201 6.33304 6.56543 6.67171 6.71617 6.75010 6.98169 7.36520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.549 6.549 2 C -0.073 4.073 3 Si 0.736 3.264 4 C -0.292 4.292 5 C 0.158 3.842 6 N -0.745 5.745 7 C 0.122 3.878 8 C -0.119 4.119 9 C -0.035 4.035 10 C 0.523 3.477 11 O -0.581 6.581 12 N -0.719 5.719 13 C 0.137 3.863 14 H 0.066 0.934 15 C -0.119 4.119 16 C -0.090 4.090 17 C -0.041 4.041 18 H 0.129 0.871 19 C 0.410 3.590 20 N -0.545 5.545 21 C 0.173 3.827 22 C -0.318 4.318 23 C 0.509 3.491 24 O -0.593 6.593 25 N -0.615 5.615 26 C -0.103 4.103 27 C -0.121 4.121 28 H 0.389 0.611 29 H 0.120 0.880 30 H -0.302 1.302 31 H -0.278 1.278 32 H 0.147 0.853 33 H 0.413 0.587 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.418 0.582 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.198 0.802 45 H 0.159 0.841 46 H 0.429 0.571 47 H 0.064 0.936 48 H 0.081 0.919 49 H 0.087 0.913 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.353 3.032 8.319 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.358 6.358 2 C -0.183 4.183 3 Si 0.643 3.357 4 C -0.304 4.304 5 C 0.034 3.966 6 N -0.375 5.375 7 C -0.003 4.003 8 C -0.158 4.158 9 C -0.057 4.057 10 C 0.311 3.689 11 O -0.461 6.461 12 N -0.374 5.374 13 C 0.032 3.968 14 H 0.084 0.916 15 C -0.157 4.157 16 C -0.129 4.129 17 C -0.061 4.061 18 H 0.147 0.853 19 C 0.146 3.854 20 N -0.268 5.268 21 C 0.033 3.967 22 C -0.343 4.343 23 C 0.310 3.690 24 O -0.476 6.476 25 N -0.252 5.252 26 C -0.142 4.142 27 C -0.160 4.160 28 H 0.239 0.761 29 H 0.137 0.863 30 H -0.230 1.230 31 H -0.205 1.205 32 H 0.163 0.837 33 H 0.249 0.751 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.116 0.884 39 H 0.260 0.740 40 H 0.104 0.896 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.094 0.906 44 H 0.215 0.785 45 H 0.177 0.823 46 H 0.269 0.731 47 H 0.083 0.917 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.991 2.511 7.594 8.243 hybrid contribution -0.593 0.889 -0.199 1.087 sum -2.584 3.400 7.395 8.540 Atomic orbital electron populations 1.86377 1.18536 1.80249 1.50613 1.25118 0.83601 1.10315 0.99309 0.94271 0.91299 0.73505 0.76654 1.20399 1.17089 0.93362 0.99514 1.20705 0.92502 0.97018 0.86337 1.44676 1.53971 1.14561 1.24316 1.21661 1.01263 0.81327 0.96018 1.21675 0.99395 0.99391 0.95294 1.19663 1.01329 0.93077 0.91583 1.20898 0.80449 0.80733 0.86842 1.90680 1.34317 1.34969 1.86165 1.46664 1.38208 1.44294 1.08276 1.21064 0.96056 0.97484 0.82161 0.91562 1.21778 0.96056 1.02976 0.94912 1.21307 0.97084 1.00066 0.94411 1.20668 0.98331 1.01405 0.85700 0.85308 1.23664 0.83596 0.87473 0.90646 1.68391 1.26103 1.07738 1.24554 1.23184 0.86392 1.01225 0.85877 1.23005 1.12731 0.93725 1.04800 1.17658 0.79879 0.89961 0.81499 1.90985 1.48255 1.65493 1.42821 1.44630 1.51282 1.17346 1.11950 1.21506 0.95510 1.02347 0.94813 1.21861 0.98592 1.00565 0.94970 0.76109 0.86260 1.23027 1.20494 0.83651 0.75053 0.91564 0.88403 0.90768 0.92057 0.88356 0.74007 0.89596 0.90679 0.90208 0.90561 0.78511 0.82316 0.73077 0.91718 0.90073 0.89464 0.92228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 2.70 11.40 -148.98 -1.70 1.01 16 2 C -0.07 0.34 1.69 71.23 0.12 0.46 16 3 Si 0.74 -3.76 29.97 68.60 2.06 -1.71 16 4 C -0.29 1.03 5.03 -16.76 -0.08 0.94 16 5 C 0.16 -0.84 9.61 83.41 0.80 -0.04 16 6 N -0.75 4.79 5.83 -345.89 -2.02 2.78 16 7 C 0.12 -0.69 7.16 86.46 0.62 -0.07 16 8 C -0.12 0.04 4.91 30.79 0.15 0.19 16 9 C -0.04 0.01 2.75 -12.43 -0.03 -0.02 16 10 C 0.52 2.08 6.81 87.66 0.60 2.68 16 11 O -0.58 -6.92 15.47 -3.02 -0.05 -6.97 16 12 N -0.72 0.56 3.38 -442.53 -1.50 -0.94 16 13 C 0.14 -0.27 2.45 44.99 0.11 -0.16 16 14 H 0.07 0.23 7.58 -2.39 -0.02 0.21 16 15 C -0.12 0.75 5.39 30.59 0.16 0.91 16 16 C -0.09 0.56 4.67 30.60 0.14 0.70 16 17 C -0.04 0.30 2.48 -11.54 -0.03 0.27 16 18 H 0.13 -1.59 8.14 -2.39 -0.02 -1.61 16 19 C 0.41 -1.02 6.73 138.18 0.93 -0.09 16 20 N -0.54 0.03 9.11 -187.55 -1.71 -1.68 16 21 C 0.17 -0.10 11.20 83.96 0.94 0.84 16 22 C -0.32 -1.23 10.07 22.48 0.23 -1.00 16 23 C 0.51 4.11 7.75 84.89 0.66 4.77 16 24 O -0.59 -10.27 17.97 -5.24 -0.09 -10.36 16 25 N -0.61 0.17 5.25 -310.69 -1.63 -1.46 16 26 C -0.10 0.58 5.19 30.61 0.16 0.74 16 27 C -0.12 0.51 5.50 30.61 0.17 0.67 16 28 H 0.39 -3.73 8.70 -74.06 -0.64 -4.38 16 29 H 0.12 -0.48 5.29 -2.39 -0.01 -0.49 16 30 H -0.30 -0.78 7.11 99.48 0.71 -0.07 16 31 H -0.28 0.65 6.82 99.48 0.68 1.33 16 32 H 0.15 -1.21 4.31 -2.91 -0.01 -1.22 16 33 H 0.41 -4.21 8.96 -92.71 -0.83 -5.04 16 34 H 0.07 -0.41 8.14 -2.38 -0.02 -0.43 16 35 H 0.10 -0.82 8.14 -2.38 -0.02 -0.84 16 36 H 0.07 0.04 8.14 -2.38 -0.02 0.02 16 37 H 0.06 0.25 7.77 -2.39 -0.02 0.23 16 38 H 0.10 -0.17 8.14 -2.39 -0.02 -0.19 16 39 H 0.42 -1.19 5.12 -92.71 -0.47 -1.67 16 40 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 41 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.08 -0.52 8.14 -2.39 -0.02 -0.54 16 43 H 0.08 -0.23 7.76 -2.39 -0.02 -0.25 16 44 H 0.20 -1.35 8.06 -2.91 -0.02 -1.38 16 45 H 0.16 0.40 8.06 -2.91 -0.02 0.38 16 46 H 0.43 -2.14 8.78 -92.71 -0.81 -2.95 16 47 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 48 H 0.08 -0.59 8.14 -2.39 -0.02 -0.61 16 49 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 50 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 Total: 0.00 -26.28 389.77 -2.73 -29.01 By element: Atomic # 1 Polarization: -19.76 SS G_CDS: -1.74 Total: -21.50 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.64 Total: 11.82 kcal Atomic # 7 Polarization: 5.56 SS G_CDS: -6.85 Total: -1.29 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -1.84 Total: -16.33 kcal Atomic # 14 Polarization: -3.76 SS G_CDS: 2.06 Total: -1.71 kcal Total: -26.28 -2.73 -29.01 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_13456076_15608500.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.181 kcal (2) G-P(sol) polarization free energy of solvation -26.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds